rna6034, rna6034 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6034
Unique Name	rna6034
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	219
Alignment location	CM002467.1:419971..423152 +

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100055g20.7326.mrna
Orig protein id	gnl\|cribi\|Naga_100055g20.7326
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:419971..423152 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100055g20	gene5829	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6034	rna6034-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24642.1	cds6019	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:419971..423152+
coding sequence from alignment at CM002467.1:419971..423152+

mRNA sequence

>rna6034 ID=rna6034|Name=rna6034|organism=Nannochloropsis gaditana|type=mRNA|length=219bp
ATGCTGCTAAAGCCTCAAACGTACAGCCCGCTGCGAAAGGTTTTCCCCTC
GTCTCCCTCTGCTCTCCGCGCGTCGCTGCTTTCTCGCTCTGGTGCAGTGG
CGGCTCCGAGTGTCTCAGCCTTCGCTGCGTTGGTCCTCTCGCAACATCAA
CTTCAGCACACACATCGTTCCACTGCAACGCCCATCAATACCTCTTCGCA
TGCGGCATCGTTGCAGTGA

protein sequence of rna6034

>rna6034-protein ID=rna6034-protein|Name=rna6034|organism=Nannochloropsis gaditana|type=polypeptide|length=393bp
MRFRRDLSLPLSFCRLARLASCILLMIMLQMVPASRDERQLRTRLTEALV
VVNQSRAIQQLATKLSAEIRREVSFALIGSQSRSAARAVLGVLTDRRGCL
HWNSSQAEPDAWVTSRAKVRDAIAQAAEVRRTDGEVVLVVEHMEKLHCDN
IMYLNNLMLAMDRSTDSGVDPLPTTLFFLFEEDPPPGVLMDGGVRSHLAE
GIDERCRPGPELNLKAFFGRTVPITFLPVPDDVPRDTQPLCSTIPLKHDK
ASWASSWLSDSHWSLNLTGKLLVVAAMGWVANVCVSAARRRIVGKAVSVT
TSGSEMEGGESKNCRATLETLTSVRGGKRAVHAPRGYEKAAVTGQGFLVA
DDTQSMRNAQEAKAQMSSEYESTDAPRCSVRRVPRRSSPKKIF

mRNA from alignment at CM002467.1:419971..423152+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6034 ID=rna6034|Name=rna6034|organism=Nannochloropsis gaditana|type=mRNA|length=3182bp|location=Sequence derived from alignment at CM002467.1:419971..423152+ (Nannochloropsis gaditana)
gagggagacgaggggaaaACCCTGTGATGATAGCGTGCCGGTTTTACAAT
TGAAACGACAAAATCCTCGCACGCTATTCATTGATGCTGTTGTAAGTGTG
AGTGACTCCGAGGGAGAGTACATGTTAGGTCAACTAGCACGCTCGCGGGT
CTCCCCACGACTCGAGACTTTCGTACAAAAAACTCCGTATCGCTCGAGCC
CCGCCTCGCTGCGTCCTACTCAACAGCTGTAGCGTCTACGAACAATACTT
ACCCGCTAGCTAGAAGTACAAACAATCTTCCGTGAGACAGCCCTCTTGCT
TCTGGTGTATTATCTGTGCCTAACGGCTAGAAGGCTTGAGAGACGGAGAC
AATACTGCGGCTCCTGGCTGTTTCCacatttttcctttcccaggTATGAA
TGACCTGTCGTGAAGGGGTGAACTCAGCCAAAGCTATCTAATCTAACTGT
GTTTTCATTCAACCTTGTGGCTTCTCTCGCCTCCTAAGAATTGTAATTCA
acatgctcctccttcctgccccccgtGACACACATACTTTCGCAGCGGGC
TGTACGTTTGAGGCTTTAGCAGCATTTCTATATTGATAAGACTCTGTACG
GAAATATGTGATGATAAAAGTTTATGAACCGCAGCAATCCCAATTCTCAG
CTGATACTTGATGTAtccatctccccctctctgctGCATAAGCAGTCGTG
ATCGACCCATCAGACGACTGTCGCAAGGCTTGGCTTTGCGGCTCAAATCA
ATAATACCTGACCTACAATGAGATTTCGAAGGGATCTATCGCTTCCGCTC
TCTTTCTGCAGGCTAGCTCGGCTGGCAAGCTGCATCTTGCTGATGATAAT
GCTACAAATGGTTCCAGCCTCTCGGGATGAAAGACAACTGAGAACCCGTT
TGAGTAAGTGAGGACTATTCTCGGAACTTGTACAGTCACGCCTATCACAA
TTTATCGCACTCAATCAAACATAATCGGAAATGGCACATTTTACCATTCA
AACACAGCCGAGGCCCTTGTGGTGGTCAACCAGTCTCGGGCCATCCAGCA
GCTAGCCACGAAGCTTAGCGCGGAGATCAGACGTGAGGTCAGTTTTGCAT
TGATAGGATCACAATCTCGAAGCGCAGCCAGGGCAGTGTTGGGCGTTCTT
ACCGATCGCAGAGGCTGTTTGCACTGGAATTCGTCTCAGGCAGAGCCGGA
CGCTTGGGTGACGTCAAGAGCTAAAGTGCGTGATGCCATTGCGCAGGCGG
CTGAGGTCCGACGTACCGATGGAGAAGTTGTTCTGGTGGTCGAGCACATG
GAAAAGTTGCACTGTGACAATATTATGTACTTGAATAATCTCATGCTGGC
TATGGATAGGTCAACGGACTCAGGCGTCGATCCCTTGCCCACCACCTTGT
TTTTCCTGTTCGAAGAGGACCCTCCCCCTGGAGTATTGATGGATGGGGGG
GTTCGCAGCCACTTGGCGGAGGGAATCGACGAACGATGCCGCCCGGGGCC
TGAGCTGAACCTAAAAGCTTTTTTTGGCCGTACAGTGCCCATTACATTTT
TGCCTGTGCCTGATGATGTGCCAAGGGACACCCAGCCTCTTTGCAGTACC
ATACCACTCAAGCACGACAAAGCCTCGTGGGCATCGTCCTGGTTATCGGA
TAGTCACTGGAGCCTGAACCTGACGGGAAAACTTCTGGTAGTGGCAGCCA
TGGGTTGGGTTGCCAACGTTTGCGTCTCTGCTGCACGACGACGGATAGTG
GGCAAAGCAGTAAGTGTAACCACGTCTGGGTccgaaatggagggaggtga
aTCAAAGAATTGCAGAGCTACTTTGGAAACCCTGACCTCTGTGCGTGGGG
GCAAGCGTGCGGTGCATGCGCCTCGTGGCTATGAGAAGGCCGCAGTGACT
GGTCAGGGATTCCTTGTCGCGGACGACACTCAGAGCATGAGGAATGCACA
GGAAGCGAAAGCCCAGATGTCATCCGAGTATGAAAGTACCGACGCGCCAA
GATGCAGTGTGCGTCGCGTGCCGAGGCGTTCTTCGCCGAAAAAAATCTTC
TAGACATGTGGCAAGAAAGATGCGTATCAATAACTGCTGTCTGATACGTA
TGCACGCTTCAAACTATCTTGCGTTTTAATGGTATGCTCTGTTTATCAAA
TTTGAGACATAGAGCACCACCTTGAACGGGACCTCAAATAAGACCAAGCG
CGTCATCATTACTTTTTTCCTTGTAACATTGGCTATGCTGTTGCATGACT
GGACTAGTGATGCGATTGTGAAGCTGTGCCTTTGTTTTTTCCACGAAAGC
TCTCCACGTGCTTCATGAGGATTTATACCTCGCAAGATTTACACTCCACA
CAAGCTTCCGAGGTACGCGAAAGGGGTGGTATGTCTCGTCACTGCCCTTC
GGCAGATGTAACATGCCGCGATCTCATCGTCTCAGCTTAGCGGGGACTCT
CTTTCGTCCATCTCGACACCAGTAGAGGACGACTTGAAAATAGACGGCCC
TTTTTCACAAATGTAGACGTAGTGCACACTTCCACCATAACTTCCATCGG
CAAGATCCCCATCGGCCGGGttagaggaagaagggaggccaTCGAGTTGA
GCTTTTGGCACTGTGTGTACACTGACTCGCCACGAGTAAGCCTCTTCTTG
CAGATACTGCAGGCGATTTTCGGGAATGCCATAAGAAATAACAATGAAGA
TGCCGTCAGCCTTCAGCACTCGAGACACTTCCATGCACATCATGGCTCCA
TTATTCAGAGATCCATTTCCACACAGAATAGAATCTAGCGTGCCCTTATC
AAGAACCACATTAAAGGAGGCGTCGGGGAGGTTCAAGGCACACGCATTCA
TGTGCTGCCAAACCATACTGGTCTTTCCTCGGTGCGATTCCCGCATCTGG
TTCACAACTACACGTGAAATGTCGATATTCGTGATGTGTGTGAAGCCATC
CTCGTACATGTCCTCACTCATTGAGGAATTGCCGCATCCGGCCATCAAAA
TAGAATCACTCTTGCGAATATGTTGCTTTAATAGACCCTTCAGACCGCTG
TACCGCTGATACCAATCAAATGGCTCTGGATCCCTACAGGGTGTGTGCAT
GAAAAAGGAGTGAAGGCGCGCATCGACGAGGCATTCTTGGCACTGGGACT
TACGTGGTGTAACGGCTATCCCAATAGCTAGC

Coding sequence (CDS) from alignment at CM002467.1:419971..423152+

>rna6034 ID=rna6034|Name=rna6034|organism=Nannochloropsis gaditana|type=CDS|length=2364bp|location=Sequence derived from alignment at CM002467.1:419971..423152+ (Nannochloropsis gaditana)
ATGAGATTTCGAAGGGATCTATCGCTTCCGCTCTCTTTCTGCAGGCTAGC
TCGGCTGGCAAGCTGCATCTTGCTGATGATAATGCTACAAATGGTTCCAG
CCTCTCGGGATGAAAGACAACTGAGAACCCGTTTGACCGAGGCCCTTGTG
GTGGTCAACCAGTCTCGGGCCATCCAGCAGCTAGCCACGAAGCTTAGCGC
GGAGATCAGACGTGAGGTCAGTTTTGCATTGATAGGATCACAATCTCGAA
GCGCAGCCAGGGCAGTGTTGGGCGTTCTTACCGATCGCAGAGGCTGTTTG
CACTGGAATTCGTCTCAGGCAGAGCCGGACGCTTGGGTGACGTCAAGAGC
TAAAGTGCGTGATGCCATTGCGCAGGCGGCTGAGGTCCGACGTACCGATG
GAGAAGTTGTTCTGGTGGTCGAGCACATGGAAAAGTTGCACTGTGACAAT
ATTATGTACTTGAATAATCTCATGCTGGCTATGGATAGGTCAACGGACTC
AGGCGTCGATCCCTTGCCCACCACCTTGTTTTTCCTGTTCGAAGAGGACC
CTCCCCCTGGAGTATTGATGGATGGGGGGGTTCGCAGCCACTTGGCGGAG
GGAATCGACGAACGATGCCGCCCGGGGCCTGAGCTGAACCTAAAAGCTTT
TTTTGGCCGTACAGTGCCCATTACATTTTTGCCTGTGCCTGATGATGTGC
CAAGGGACACCCAGCCTCTTTGCAGTACCATACCACTCAAGCACGACAAA
GCCTCGTGGGCATCGTCCTGGTTATCGGATAGTCACTGGAGCCTGAACCT
GACGGGAAAACTTCTGGTAGTGGCAGCCATGGGTTGGGTTGCCAACGTTT
GCGTCTCTGCTGCACGACGACGGATAGTGGGCAAAGCAGTAAGTGTAACC
ACGTCTGGGTccgaaatggagggaggtgaaTCAAAGAATTGCAGAGCTAC
TTTGGAAACCCTGACCTCTGTGCGTGGGGGCAAGCGTGCGGTGCATGCGC
CTCGTGGCTATGAGAAGGCCGCAGTGACTGGTCAGGGATTCCTTGTCGCG
GACGACACTCAGAGCATGAGGAATGCACAGGAAGCGAAAGCCCAGATGTC
ATCCGAGTATGAAAGTACCGACGCGCCAAGATGCAGTGTGCGTCGCGTGC
CGAGGCGTTCTTCGCCGAAAAAAATCTTCTAGATGAGATTTCGAAGGGAT
CTATCGCTTCCGCTCTCTTTCTGCAGGCTAGCTCGGCTGGCAAGCTGCAT
CTTGCTGATGATAATGCTACAAATGGTTCCAGCCTCTCGGGATGAAAGAC
AACTGAGAACCCGTTTGACCGAGGCCCTTGTGGTGGTCAACCAGTCTCGG
GCCATCCAGCAGCTAGCCACGAAGCTTAGCGCGGAGATCAGACGTGAGGT
CAGTTTTGCATTGATAGGATCACAATCTCGAAGCGCAGCCAGGGCAGTGT
TGGGCGTTCTTACCGATCGCAGAGGCTGTTTGCACTGGAATTCGTCTCAG
GCAGAGCCGGACGCTTGGGTGACGTCAAGAGCTAAAGTGCGTGATGCCAT
TGCGCAGGCGGCTGAGGTCCGACGTACCGATGGAGAAGTTGTTCTGGTGG
TCGAGCACATGGAAAAGTTGCACTGTGACAATATTATGTACTTGAATAAT
CTCATGCTGGCTATGGATAGGTCAACGGACTCAGGCGTCGATCCCTTGCC
CACCACCTTGTTTTTCCTGTTCGAAGAGGACCCTCCCCCTGGAGTATTGA
TGGATGGGGGGGTTCGCAGCCACTTGGCGGAGGGAATCGACGAACGATGC
CGCCCGGGGCCTGAGCTGAACCTAAAAGCTTTTTTTGGCCGTACAGTGCC
CATTACATTTTTGCCTGTGCCTGATGATGTGCCAAGGGACACCCAGCCTC
TTTGCAGTACCATACCACTCAAGCACGACAAAGCCTCGTGGGCATCGTCC
TGGTTATCGGATAGTCACTGGAGCCTGAACCTGACGGGAAAACTTCTGGT
AGTGGCAGCCATGGGTTGGGTTGCCAACGTTTGCGTCTCTGCTGCACGAC
GACGGATAGTGGGCAAAGCAGTAAGTGTAACCACGTCTGGGTccgaaatg
gagggaggtgaaTCAAAGAATTGCAGAGCTACTTTGGAAACCCTGACCTC
TGTGCGTGGGGGCAAGCGTGCGGTGCATGCGCCTCGTGGCTATGAGAAGG
CCGCAGTGACTGGTCAGGGATTCCTTGTCGCGGACGACACTCAGAGCATG
AGGAATGCACAGGAAGCGAAAGCCCAGATGTCATCCGAGTATGAAAGTAC
CGACGCGCCAAGATGCAGTGTGCGTCGCGTGCCGAGGCGTTCTTCGCCGA
AAAAAATCTTCTAG

Synonyms

Publications