rna6033, rna6033 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6033
Unique Name	rna6033
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	819
Alignment location	CM002467.1:419811..420545 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100055g21.7327.mrna
Orig protein id	gnl\|cribi\|Naga_100055g21.7327
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:419811..420545 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100055g21	gene5828	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6033	rna6033-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24643.1	cds6018	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:419811..420545-
coding sequence from alignment at CM002467.1:419811..420545-

mRNA sequence

>rna6033 ID=rna6033|Name=rna6033|organism=Nannochloropsis gaditana|type=mRNA|length=819bp
ATGCGGCTCTGTCGAGGTTTCTTGTATCCTCGACTTTTTAACGCCTGCCA
AGTAAGGCGTGTGTATTCTGGTGCTCCATTACCAATATGTAATATGGATC
CAAGGAGTGGAAGACGCGCCAAAATATCTATGCAGAGTATGTATGACAAG
GAAGGCAATCGGCGCCGCCGAGTACGCAGTCGAGTAAATCGGAAGGGCGA
GGATGCGGACGAGGAAGGCGATGATGAAGAAGAGGAATATCGAGCAATGC
GTCCCCCGGCTCTAGACAGAGTCCGCCCTCCTCCTTTCTCAAGAGGCCGT
CCAGAAGTCGGGAAGAACAGATTACCATTCGGAATATCATGGATACCGCA
GGGTCTGAGCGCTGCGCTGCTCTTGGGTACATTTGTGTTGGGTGTTGGCA
CCGGTGTTACTGTCGATTCTGCAGTTAACACAAACAAGAAAGACCTTGCG
TCTCGCGATGCCATCGATAAGAACGCTCCCAACCCTAAGTTTTGCCAGCG
CTACGGTGCCAGTACATTGGTTCTTGACAACCGAATATTTGTGTCGTTTA
ATCCTTTCGATGTGTATGTGACGCAGGCGGATGTGAAGCCTGGTTGCGTT
TTGCGTGCTGCCAATGTAGTCCAGGCCCTGCAAGGCAGGGGATTGCTAAC
GGACGAGGAGGTCAATGTGTGTAAAAATGGCAACAACACGTGGGCATACG
TAGGCGATATAAACGACAAACCACAGCTTTCTTGTGTGTATCAATCTGAC
GACGCGCAAAATGAGTTTCTGGAGAAGAATCCGAAGCTGGGTGTGGGAGA
AGACGTGTATGACAAGTAA

protein sequence of rna6033

>rna6033-protein ID=rna6033-protein|Name=rna6033|organism=Nannochloropsis gaditana|type=polypeptide|length=72bp
MLLKPQTYSPLRKVFPSSPSALRASLLSRSGAVAAPSVSAFAALVLSQHQ
LQHTHRSTATPINTSSHAASLQ

mRNA from alignment at CM002467.1:419811..420545-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6033 ID=rna6033|Name=rna6033|organism=Nannochloropsis gaditana|type=mRNA|length=735bp|location=Sequence derived from alignment at CM002467.1:419811..420545- (Nannochloropsis gaditana)
ATGCTGCTAAAGCCTCAAACGTACAGCCCGCTGCGAAAGTATGTGTGTCA
CGGGGGGCAGGAAGGAGGAGCATGTTGAATTACAATTCTTAGGAGGCGAG
AGAAGCCACAAGGTTGAATGAAAACACAGTTAGATTAGATAGCTTTGGCT
GAGTTCACCCCTTCACGACAGGTCATTCATACCTGGGAAAGGAAAAATGT
GGAAACAGCCAGGAGCCGCAGTATTGTCTCCGTCTCTCAAGCCTTCTAGC
CGTTAGGCACAGATAATACACCAGAAGCAAGAGGGCTGTCTCACGGAAGA
TTGTTTGTACTTCTAGCTAGCGGGTAAGTATTGTTCGTAGACGCTACAGC
TGTTGAGTAGGACGCAGCGAGGCGGGGCTCGAGCGATACGGAGTTTTTTG
TACGAAAGTCTCGAGTCGTGGGGAGACCCGCGAGCGTGCTAGTTGACCTA
ACATGTACTCTCCCTCGGAGTCACTCACACTTACAACAGCATCAATGAAT
AGCGTGCGAGGATTTTGTCGTTTCAATTGTAAAACCGGCACGCTATCATC
ACAGGGTTTTCCCCTCGTCTCCCTCTGCTCTCCGCGCGTCGCTGCTTTCT
CGCTCTGGTGCAGTGGCGGCTCCGAGTGTCTCAGCCTTCGCTGCGTTGGT
CCTCTCGCAACATCAACTTCAGCACACACATCGTTCCACTGCAACGCCCA
TCAATACCTCTTCGCATGCGGCATCGTTGCAGTGA

Coding sequence (CDS) from alignment at CM002467.1:419811..420545-

>rna6033 ID=rna6033|Name=rna6033|organism=Nannochloropsis gaditana|type=CDS|length=438bp|location=Sequence derived from alignment at CM002467.1:419811..420545- (Nannochloropsis gaditana)
GGTTTTCCCCTCGTCTCCCTCTGCTCTCCGCGCGTCGCTGCTTTCTCGCT
CTGGTGCAGTGGCGGCTCCGAGTGTCTCAGCCTTCGCTGCGTTGGTCCTC
TCGCAACATCAACTTCAGCACACACATCGTTCCACTGCAACGCCCATCAA
TACCTCTTCGCATGCGGCATCGTTGCAGTGAATGCTGCTAAAGCCTCAAA
CGTACAGCCCGCTGCGAAAGGTTTTCCCCTCGTCTCCCTCTGCTCTCCGC
GCGTCGCTGCTTTCTCGCTCTGGTGCAGTGGCGGCTCCGAGTGTCTCAGC
CTTCGCTGCGTTGGTCCTCTCGCAACATCAACTTCAGCACACACATCGTT
CCACTGCAACGCCCATCAATACCTCTTCGCATGCGGCATCGTTGCAGTGA
ATGCTGCTAAAGCCTCAAACGTACAGCCCGCTGCGAAA

Synonyms

Publications