rna6023, rna6023 (mRNA) Nannochloropsis gaditana

Overview
Namerna6023
Unique Namerna6023
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2886
Alignment locationCM002467.1:392476..393095 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100055g31.7325.mrna
Orig protein idgnl|cribi|Naga_100055g31.7325
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:392476..393095 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100055g31gene5819Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6023rna6023-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24641.1cds6008Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6023 ID=rna6023|Name=rna6023|organism=Nannochloropsis gaditana|type=mRNA|length=2886bp
AATGCCATGTACATTTTTTCTACCAAATAATGTAGATAAGAAGACGTCCG
TTTAAAACTTTCCCATGAGTATCAAACCCACGTGGGAAGCATTCGCGGAC
TGTCCCTCAACCCTCTTTTCACCGCAAAACCGAAGTGCCAGTATCCTTAG
AAAACGTGAAATATATGGCCAATTGCGACGTCGGGATGCGACTGATTCAG
CAGCCTACTCTCCAGCTTTTACCCCTTTCGATGTGCGACGCCTCGGATTC
GTCGGTCGGGCATCTCACAAACGAAGTTGGCTGAACAGTGTGCTGAAACA
TGACGGGTGCGTGAACACGGCGTGCTGGAGTGAGGACGGACGAATACTCT
TTACAGCAGGCGACGACAGGGATATAAAAATATGGCTTGCCACCTATGAC
TTTAGTGCCCAGGGAGTCGTAGCGAGCGGCCACTCTGCGAATATATTTGG
AGTCCAAGTGCCTCCAAACCGACCTGATGAGCTCGTGACTTGCGCCGCGG
ATGGTACTCTACGGAGACATCAGATAGATTGCAATCATCCTGTAATTGCA
GGTCATGTAGTTGGGACGTCATGCGCGCCGCACGTGATGCATGGCTTCTC
CTTCTGGGAGGGGGGATCCGACTCAGGGGGAGGGCGTGGACAAATTATTC
TGACAGCCCAGGGCGATGGCCTAGTCATGATGTACGACTTGCGGGAGCAA
TGTAGCGCTGGGCGGGCTATGTACAGACGACAAGTCCCTGTAAAGGCGGT
GGTTACGCCCCCTGTTCATAACACTGCCAGTGGCGTGTCGGCTTTCATGA
TGTACTTAGGAGGGCACGGCGCCACTCTGGAAGCGCACGATCTTCGTCGC
TTGCCCCGCACAGGATCAAAACCTGTTCAGATCTACCGTCCACAAGGCCT
ACCGCGGCACCTCGACGAGGACTTCCAGGAGAATGTGAGTCTGAGCGGTT
TGGCGTTCTCCAAAATGCGGGGAGAAGTGTTGGCCTCCTACCAGGGGGAC
CAGATCTACGGCTTTGCCACGGCTTGCTATGAAGAGAGACGCATTGCACA
GGAAGATCGTGCTTCGATGGAGGCGTGGTCGTTGGGAGGACACGTTAATT
GTCAGACATTCCTAAAAAATGTTACATACTTTGGGCCGGCGGAGGAGTAC
ATCGCTTGTGGGGATGACAGTGGCCACAGCTTTTTGTGGGACAGGCGGAC
GGGAATGCTGGTGAACGCCATACGAACCGACCTTTCTGTTGCGAACGGAT
GTGTGTCACACCCCTTTCTCCCTATGCTGGCGTGTTATGGTATAGATGAC
ACGGTGAAAGTGTTGGCGGTCGGCGGCCGCTATCGCCAGCCCGAGGGTGC
GAACGGGGATGACTTCGTAGAAGAGGACAGTGATAATGGATGGCAGGACA
CTCACAGAATGCCATATGAAGCACAACGACGCGAAATGGGAAGAGGGAGT
GACGGCACTGCACCGGAATACCGTAATTTAAGGGGCAGCAGACGCCCCCG
GTCACGGTCAAACCTGCATCGGACAGAACTGCCTCCAAATCAATATTTTG
CGCAACTTTTGGAAAAAAACTTAAATAAAGTCATAGCCATAGACGCTCCC
AAGCCGTTGCGAGTCGTGTATGACTTTAATCGGTTTTGTCATCACGTGCG
ACGCATCCGCAAGTTTCTGATCAATCCCAATGAATGCCTGCCAGATTACC
CAAGTGATTTGTGGGACCGACAACTTTCTCTTGAAGAATTGAAAGGTCTG
TTGATGGCCTTGAAGGAGAAGGGGAACCTGTCTTTCAAGAAGATGGAATA
TCGCATAGCTGCGGCAAGCTATGGTAAAATTTTGAATTGGCTTTTCTCTT
CCGCTGAATTAGAACCGCACATCCGAATGACACGTGAAGAAAATTTTAAA
CTGTGGAATGGCGACGACTATGAAGATGCGCCCGTAGTTTTTTTTGGAAC
TCTACTGCCGCCACACGCCCGACAACGAGAAAGAATAAATGCCATCTTGG
CAGGAAATTTCACGGAGGATGGAGCTAACATCGCTGTAGAAGCGGTCGAA
AGAAAGAGTGACGCGAACGCTGCATCCATTTCCTCCCAAGCTGTGAAGGA
GGAGCTAATGGATTTGCTGGTGTCGTCTTTGCTGAACTTGGCGATGGCAG
TCTTAAAGCAAAACGAATACAAGCGTGCCATAAAATTATGTACCCTGGCA
ATCCGACACCGGCCTTTCGATGCTAAAGCGTATTACAGGAGAGGTAGCGC
CGCATTAGAGCTAGGTGACGACTATGAGGCTGGCACGAAGGACCTTATTA
AAGCATGTAAACTGGCACCTAATGACGTACTAATTCGGCGCAAGTTAGAG
ACGTGCCGGCAAATTGTGAAGGCGCGAAAAGCTCGAGAATCCCGGGCATA
TGCCTCTTTCTTCTCTCCTTGATGTGAAAATCGAGGGTGATATAAATTGC
AAAGTCCAAGCACGTTGGGTTGAATATTGAAAGAGATTGTTTTCAACCAC
AGTCCAAAAAACCAGAAATGTCAGAAGACTGCAGAAGAATAACAAGAGCA
AGAAAAAACTATTTTGTCAACCACAGTCCAAAAAACCAGAAAAGTCAAAA
GACTGCAGAAGAATAACAAGAGCAAGAAAAAACTATTTTGTGGACGCAAA
GTTAAATTTAGTTGATACTTAGTATTTAGACTTTTATCATCTCAAAAGGC
GTCTTTCCTTCAAAATCAGAGAATCGACGATAGGAGTGCAATGCTCGAAG
GGAGGAATTTTTCAATCGCGCACCCGTCCACTTGAGACTAGATTAAGAGC
GTCAGTAGACACATGTTTACACGTCGTTCGATGTCCACTTGCATAGCGTA
CCATTCCCGTCTTTCTCACCAGCGTTTTGGACCATC
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protein sequence of rna6023

>rna6023-protein ID=rna6023-protein|Name=rna6023|organism=Nannochloropsis gaditana|type=polypeptide|length=168bp
MEMRASCRGGRKCMSSENGNVKTYKGRGKSGAKRGRNEQWFEAFTRCRTL
FGTFVDLMVYRQDVLNGSLVATYRAGPLKHVITGVEDEGGRKSRSMISGC
RRHQSVESFTSRLMVQNAGEKDGNGTLCKWTSNDWTGARLKNSSLRALHS
YRRFSDFEGKTPFEMIKV
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mRNA from alignment at CM002467.1:392476..393095-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6023 ID=rna6023|Name=rna6023|organism=Nannochloropsis gaditana|type=mRNA|length=620bp|location=Sequence derived from alignment at CM002467.1:392476..393095- (Nannochloropsis gaditana)
ATGGAAATGAGGGCAAGTTGTAGAGGGGGTCGAAAATGCATGTCTTCAGA
GAATGGAAATGTGTTGGATTGAGCAGAAAATGGTTTGCATGAGTGTTTGC
GCGTTTTTATTTGCTACGCGCAGAGACCAACAGCAAAACATACAAGGGAA
GGGGTAAGTCAGGAGCGAAGAGAGGACGCAACGAGCAATGGTTTGAAGCA
TTCACGCGCTGCCGCACGCTCTTCGGTACATTTGTGGATCTCATGGTGTA
TCGGCAAGATGTGCTCAATGGGTCCCTAGTTGCGACATATCGTGCGGGCC
CATTAAAGCACGTGATCACTGGTGTGGAGGACGAGGGAGGACGAAAGTCG
AGGTCGATGATAAGTGGTTGCAGACGCCATCAATCTGTAGAAAGCTTTAC
CTCGAGATTGATGGTCCAAAACGCTGGTGAGAAAGACGGGAATGGTACGC
TATGCAAGTGGACATCGAACGACGTGTAAACATGTGTCTACTGACGCTCT
TAATCTAGTCTCAAGTGGACGGGTGCGCGATTGAAAAATTCCTCCCTTCG
AGCATTGCACTCCTATCGTCGATTCTCTGATTTTGAAGGAAAGACGCCTT
TTGAGATGATAAAAGTCTAA
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Coding sequence (CDS) from alignment at CM002467.1:392476..393095-

>rna6023 ID=rna6023|Name=rna6023|organism=Nannochloropsis gaditana|type=CDS|length=1521bp|location=Sequence derived from alignment at CM002467.1:392476..393095- (Nannochloropsis gaditana)
TGGACGGGTGCGCGATTGAAAAATTCCTCCCTTCGAGCATTGCACTCCTA
TCGTCGATTCTCTGATTTTGAAGGAAAGACGCCTTTTGAGATGATAAAAG
TCTAACAAAACATACAAGGGAAGGGGTAAGTCAGGAGCGAAGAGAGGACG
CAACGAGCAATGGTTTGAAGCATTCACGCGCTGCCGCACGCTCTTCGGTA
CATTTGTGGATCTCATGGTGTATCGGCAAGATGTGCTCAATGGGTCCCTA
GTTGCGACATATCGTGCGGGCCCATTAAAGCACGTGATCACTGGTGTGGA
GGACGAGGGAGGACGAAAGTCGAGGTCGATGATAAGTGGTTGCAGACGCC
ATCAATCTGTAGAAAGCTTTACCTCGAGATTGATGGTCCAAAACGCTGGT
GAGAAAGACGGGAATGGTACGCTATGCAAGTGGACATCGAACGACATGGA
AATGAGGGCAAGTTGTAGAGGGGGTCGAAAATGCATGTCTTCAGAGAATG
GAAATGTTGGACGGGTGCGCGATTGAAAAATTCCTCCCTTCGAGCATTGC
ACTCCTATCGTCGATTCTCTGATTTTGAAGGAAAGACGCCTTTTGAGATG
ATAAAAGTCTAACAAAACATACAAGGGAAGGGGTAAGTCAGGAGCGAAGA
GAGGACGCAACGAGCAATGGTTTGAAGCATTCACGCGCTGCCGCACGCTC
TTCGGTACATTTGTGGATCTCATGGTGTATCGGCAAGATGTGCTCAATGG
GTCCCTAGTTGCGACATATCGTGCGGGCCCATTAAAGCACGTGATCACTG
GTGTGGAGGACGAGGGAGGACGAAAGTCGAGGTCGATGATAAGTGGTTGC
AGACGCCATCAATCTGTAGAAAGCTTTACCTCGAGATTGATGGTCCAAAA
CGCTGGTGAGAAAGACGGGAATGGTACGCTATGCAAGTGGACATCGAACG
ACATGGAAATGAGGGCAAGTTGTAGAGGGGGTCGAAAATGCATGTCTTCA
GAGAATGGAAATGTTGGACGGGTGCGCGATTGAAAAATTCCTCCCTTCGA
GCATTGCACTCCTATCGTCGATTCTCTGATTTTGAAGGAAAGACGCCTTT
TGAGATGATAAAAGTCTAACAAAACATACAAGGGAAGGGGTAAGTCAGGA
GCGAAGAGAGGACGCAACGAGCAATGGTTTGAAGCATTCACGCGCTGCCG
CACGCTCTTCGGTACATTTGTGGATCTCATGGTGTATCGGCAAGATGTGC
TCAATGGGTCCCTAGTTGCGACATATCGTGCGGGCCCATTAAAGCACGTG
ATCACTGGTGTGGAGGACGAGGGAGGACGAAAGTCGAGGTCGATGATAAG
TGGTTGCAGACGCCATCAATCTGTAGAAAGCTTTACCTCGAGATTGATGG
TCCAAAACGCTGGTGAGAAAGACGGGAATGGTACGCTATGCAAGTGGACA
TCGAACGACATGGAAATGAGGGCAAGTTGTAGAGGGGGTCGAAAATGCAT
GTCTTCAGAGAATGGAAATGT
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Synonyms
Publications