rna6020, rna6020 (mRNA) Nannochloropsis gaditana

Overview
Namerna6020
Unique Namerna6020
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3057
Alignment locationCM002467.1:387515..388696 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100055g34.7348.mrna
Orig protein idgnl|cribi|Naga_100055g34.7348
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:387515..388696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100055g34gene5816Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6020rna6020-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24664.1cds6005Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6020 ID=rna6020|Name=rna6020|organism=Nannochloropsis gaditana|type=mRNA|length=3057bp
GCTGCATACCAAGTCCCTGCGAACACATCCTCACGATTCGTATTATTTTT
GTTATTTATCTTTTGTGCGATGCTTTAATCTTTCTTTGCTTTCTTTCTTC
CTTCCAAATTATGACATGGCTCGCAATGGTTCATATAATACTCTTCGTCT
TTCGAAGCCAGAAGGTCTTCGTCGCATCCCCCTGGCCCTCCACTTTCTTT
GAAGGGAACTCAGCAAACTGTCATTCGTACGAATTAATGTGGCAGTGTTC
AGTCCGTGATTAAAGTAATTATGAAACCTCACCATAAATAGATGGCAGGC
CTTGAACTCAAGACTGCGGTAAATGTCACTGGACCTCAACTGTCAATGGA
CAAGGACTCGTCGCTGCCTTTGGCAAAGACCAAAAGCCATGGTGACAGGA
AATATTCCATCGACATGGGGGTGCACCATTCTCTCGAGTGGAACGTGACC
AGCTATGAAGTTGGCAGTGGCAAAGGAAAGAAAAGCATTCTCAACCTTAT
TGGTAAGTGTGTTTTGAGTTTCCAGCCATTCTTTGCTCTAGTTCCCCCGA
TGGAAACTCCTTTCTATGACAAGTGTCCATCTATTCTTATCCTGTAAATA
ATAAGCATCCTTTTTGACAACCCGTCTTCCATTTAATCGACCAATTTCTG
TCGACTTCCTAAAGCCGGAAAGACTCGCAGTGGCGAGCTGACGGCAATTA
TGGGGCCCTCCGGTGCAGGAAAGACCACACTTCTGGAATGTATTTCGCTT
CGAAATCGAAAATTTGAAGGCGCCGTGCACTACGACAATCGAGGGCCAAC
AGGCGAGTTTTTCACCTGCTCCGTTCTTGTCCACCAGAAAGAGCTCCTGT
TCGGGTTCATGACCCCGAGAGAGCATCTTCTCTTTCATGCTATTGCACGA
ATGAGTAAGAACCATACGATCGAGCAGATCAATGCCCGTGTGGAGGAAGT
CTTACAGGAAGTTAAACTCGAGAAATGCGCTGACACCATCGTGGGCGGCA
CGGACCCCATCTACATGCGCAAGGGACTCTCAGGAGGGGAACGAAAGCGA
CTCTCCATCGCCGCCGAGTTGCTGCTTGCCCCGCAACTAATTTTTTTGGA
TGAGCCCTCTTCTGGCCTTGACTCTGTCATGTCTGAATCGATATTCGGCA
CGTTAAAGGACCTCACTCAATCAGGCCGCATTGTCGTTGCCTCCGTCCAT
TGTCCTTCTTCAGAGATGTGCCAGCAATTCACACACGTACTTCTGCTAAC
ATTCGACGGTCGCCTTGCTTACCATGGGCGTCAAGATGCTGCCATTCGCT
ATTTCTCCTCCTTGAGCTACCAATGTCCCGAGAACTATAACCCCTCCGAT
TTCTACCTTAAGCTCATTTCTGCGACACCTGGTGCAGATCCTGCGCAGGA
AAAAGCGCGCATGAACCAACTTGTAGCCGCGTACAACGCATCAGATATGG
TTCGGAAGACGCCGCTGGCCCCGGACGAGACTCACAAACAATTTCAGATG
GTGTTCGGCCATGCTAGTAGCTGGACACTTTTCAAGATAAACCTTTGGCG
GGCCTTTATCCAGCTGCAGCGGGATTGGGTCACATTTGTGCTCTGGGGTT
TGGTCTCTGCCCTTGTCGGTGGGCTTTTCGGCATCCTGTATTGGCAGCAG
GCCCGCAGCAATTGGCGAAATCTTTTAGGGCTCCTCTTTTCTGTCGTTGT
GGCGAACCTCTTTACTTCCTCTTTGGCAGTTATGATGCGTTTTCCGCTCG
ACTGGGCGATTGTTGTCCGAGAATATTTTTCAGGCTCAAACGCGATTGGT
CCTTACCTGGTGGCGCGCTTCATCGTGGATGCACCAATGGGATACGGGCC
GTTCCTGCTTATCACACTTCTCTACTGGATGACAGGTATGGACTCGGACA
TCGGCAAGTTTGTGATTTTCGCTTTGACATTTATTTCCGGTAACTGGGCG
TCCACCTCCATGGGTCAATACGTCTCGTCCTTTTCGGCCAATCCATTCAT
TGGTCTTACCATCCTTCCCGCCTTTGTCGCGCCAATGATCATGTTCTCTG
GTATCCTTTATGAGCGCTCTTCTGTTCCTGCTTGGTTGAGCTGGCTACAG
ACACTGTCAATTGTAAATTATTCTTTCTCAGCGCTAATGATCCAGCAGAT
CCACATCCTCCCCAAGCCTCTGGCTCTTCTTGTGATGCAATTTGTGGAGC
TGAATCCCGATACCATGGGCTGGGACATTGGTATGCTTTGGATAATGAAC
TTCGGTTTTCAGATCCTTACATACATAAATCTCTCTCTTCGTCTTCGTTT
TGCAACTGGATAAGACAAGATGTATTATCTTCAAGCAGATCGAAAAAGAT
AAATGGGTGCGAAACATGTGAAAGGAACCATCAAGGGTATGCACCACCAA
AAAAAGGAAGTTCTTTTTATCGACTTGCGCGTATGATAAAATGACCTGCG
GCTCGAAATGTACTGATAGACAGGTGTAAGACAGGAGACAAATGGGAAAA
GGTGTACTAAAAGGCATGTGATATCCATTTCACAAATGAGCTAATACAAC
ATTCAGTACAAGAAGAACCTTGGCTTGAAACAGTGTAGGAGAAGATGTGG
GACCAAATTGCAAGTAGCGCGGTAAGATCAACAAGTGAACAATGTTTACA
TGATGGTCACTGATTAAGGGCCCAACAGCCGTGAGAAAGATGGAACGAAG
TGTCTGGCGTCGAACGTTAGTTCTGCCTTCGACTTAGATAAAATTTTGGT
TCGTCAGCGCAGACCATGCTCTCAGAAGAGAAGTAGTGAGAAGGCGGATT
TGAGCACATACTTTGGCGTCGACAATACAATGTGCTGAAAATTCGCAAAG
AAAATGTCGACAAGTTGTCAAACAAAGTAGAAGCGCACCGAGTTTGCCGG
TTTTGGTGAAAAACCGTTACTAGCAGCAACTGGAACATGGCGATATTTTA
ATCATTTTTTCATTGTAAAAATCCAGATTACATATCAGGCACCCGACCAT
GCGAGTCTTAGGTAGTGCTGTTCAATAAGGTCTGCATTGTGTGACAAGGC
ATAAAAT
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protein sequence of rna6020

>rna6020-protein ID=rna6020-protein|Name=rna6020|organism=Nannochloropsis gaditana|type=polypeptide|length=104bp
MMKLECVSFVHCHDNGDNLDTIYPVKAKKSSPPILLLRYVAVIINARYSW
SLKIVDSAIPLQHFRSPSETNILMRKAVRKATPFSTAGRLQPHKTKGTYD
SKSW
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mRNA from alignment at CM002467.1:387515..388696+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6020 ID=rna6020|Name=rna6020|organism=Nannochloropsis gaditana|type=mRNA|length=1182bp|location=Sequence derived from alignment at CM002467.1:387515..388696+ (Nannochloropsis gaditana)
AGAGAACATTCTGAAATCAACTGAGTGGGCTTTCTTAAAACATCTCTGCG
AGATACATAATACATAATCATTCTACTTGCATAAAATTGACCTTGAACGT
TACAGCGATATGGTGTAAAGATGATTGCCAAATATACGTTTTAAAAGCGT
AAATGTATTCCTTTTGCTTTACTTTATATCATGAGCAAGCACAGTGAATC
TGATGACAACGTCGTTCTGCCGCGACTTCTTGTGACATATGCTACTTTTG
ATGTATCTGTCTTGATAACTCTTTATAATGCTCCTACGCCGTAAGGGAAG
CTACTCCACGTTTCCTTTGGCTACATGCGCGTCAAATCAAAATCTCCTAC
GCTCATTTCAACTTGAGTAAGGGATTTCGGACTGTGGTTTCAGGCATTCT
CATGGTTTAATGCAACAACAGATGCAGCATTCCTTAGAGTGTAAACATGA
TCCTAAGCGACGAGGTCTAAAGCGCAGTTTGCGAAGAGGTTTCCCGTTGT
GTAGCGTTTAAGAACAAAAGGTGTCCTGAAGTCATTTTCACAAGTAAAGC
ACAATGTTGTGCATATGATGAAATTGGAATGCGTGAGTTTCGTGCATTGC
CATGACAACGGTGACAATTTGGACACAATTTATCCTGTCAAGGCGAAGAA
GTCGTCACCACCTATTTTACTTCTGAGATATGTCGCCGTAATAATAAATG
CGCGATATTCATGGTCACTGAAGATCGTTGACTCAGCGATTCCCCTACAG
CACTTCCGGTCCCCATCCGAAACTAACATCTTAATGCGTAAGGCTGTGCG
AAAAGCTACGCCTTTTTCTACCGCGGGGCGTCTTCAACCACACAAAACTA
AAGGGACCTATGACAGCAAGAGTTGGTGACTTTTTTCTTACGATGATGTG
GCAAAGATAAGGCACGGATATTATTGAACTATGATGGGAGTTAAGGTCAC
ATGTAGCACCTTCGTGCGGGGACGGAAGAATAGCTGAAGATCCCAAAAGA
CCGTGAAGTGCCCTTGTTGGTAAAACAAGCACGATGTGAACTCTAAGTCA
GCACACAATCTTAAACGCTACACCTCTGGCAGCACGGAGTTTTCCTGCAC
CATTAGCTCTGATTCTTTATTCTTTCAAGTATTCTGTTGCACACAATCAT
TTCGATTTTGACTCTCCTTCATTATATTCTGC
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Coding sequence (CDS) from alignment at CM002467.1:387515..388696+

>rna6020 ID=rna6020|Name=rna6020|organism=Nannochloropsis gaditana|type=CDS|length=315bp|location=Sequence derived from alignment at CM002467.1:387515..388696+ (Nannochloropsis gaditana)
ATGATGAAATTGGAATGCGTGAGTTTCGTGCATTGCCATGACAACGGTGA
CAATTTGGACACAATTTATCCTGTCAAGGCGAAGAAGTCGTCACCACCTA
TTTTACTTCTGAGATATGTCGCCGTAATAATAAATGCGCGATATTCATGG
TCACTGAAGATCGTTGACTCAGCGATTCCCCTACAGCACTTCCGGTCCCC
ATCCGAAACTAACATCTTAATGCGTAAGGCTGTGCGAAAAGCTACGCCTT
TTTCTACCGCGGGGCGTCTTCAACCACACAAAACTAAAGGGACCTATGAC
AGCAAGAGTTGGTGA
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Synonyms
Publications