rna602, rna602 (mRNA) Nannochloropsis gaditana

Overview
Namerna602
Unique Namerna602
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length357
Alignment locationCM002455.1:1501799..1502075 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100173g9.4679.mrna
Orig protein idgnl|cribi|Naga_100173g9.4679
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1501799..1502075 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100173g9gene579Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna602rna602-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30073.1cds602Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna602 ID=rna602|Name=rna602|organism=Nannochloropsis gaditana|type=mRNA|length=357bp
ATGACTGGCCTATCTCAGCAAGTGAGTTTCGACCACGAGACGCCCCGGTC
TTGGAGGAAGATGGAAGCAATCGTATCGCAAGCCTCTGACGCTGCGCGAA
CGACATACTGCTCCATTCTCCATAATCTTTTGAGCGTGAGTGTGCATCAT
AAACTATGCGGGGGGGGGGGGTTTCAACCGCTGCATAAAAGCATACATGC
GCTCTACCTCGACGCGTATGCGAGGGGGAAGTCACAGTCTGATGTTGATA
AAAGCATCCTCGCACATTTGACGTGCCATACGTGCCGGGAAAAGTTGATG
ATTGAATTTACCTATCTACATGAGATTACTGACACTTGGACGAATAGTTC
TAATTAG
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protein sequence of rna602

>rna602-protein ID=rna602-protein|Name=rna602|organism=Nannochloropsis gaditana|type=polypeptide|length=73bp
MLKAGRSAIKLIDRIHCCWNAIYESLHFELEVTTDDLFTSGKCELSLDEI
DVTGRIRRQIIIRSMKYPEKLSE
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mRNA from alignment at CM002455.1:1501799..1502075+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna602 ID=rna602|Name=rna602|organism=Nannochloropsis gaditana|type=mRNA|length=277bp|location=Sequence derived from alignment at CM002455.1:1501799..1502075+ (Nannochloropsis gaditana)
ATGCTGAAAGCGGGTCGAAGCGCGATTAAATTGATCGACCGTAtccatgt
tttttttttcaaagacAGGATCCATGATTTTAAGGTGAATACTTCCAATC
AAGTGTTGCTGGAATGCAATCTATGAATCGCTGCATTTTGAGCTCGAAGT
TACCACAGACGATTTATTTACTTCGGGGAAGTGTGAGCTGTCTCTAGACG
AAATAGACGTCACTGGACGAATCAGAAGACAAATAATCATAAGAAGCATG
AAATATCCGGAAAAATTGTCCGAATGA
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Coding sequence (CDS) from alignment at CM002455.1:1501799..1502075+

>rna602 ID=rna602|Name=rna602|organism=Nannochloropsis gaditana|type=CDS|length=444bp|location=Sequence derived from alignment at CM002455.1:1501799..1502075+ (Nannochloropsis gaditana)
ATGCTGAAAGCGGGTCGAAGCGCGATTAAATTGATCGACCGTAtccatTG
TTGCTGGAATGCAATCTATGAATCGCTGCATTTTGAGCTCGAAGTTACCA
CAGACGATTTATTTACTTCGGGGAAGTGTGAGCTGTCTCTAGACGAAATA
GACGTCACTGGACGAATCAGAAGACAAATAATCATAAGAAGCATGAAATA
TCCGGAAAAATTGTCCGAATGAATGCTGAAAGCGGGTCGAAGCGCGATTA
AATTGATCGACCGTAtccatTGTTGCTGGAATGCAATCTATGAATCGCTG
CATTTTGAGCTCGAAGTTACCACAGACGATTTATTTACTTCGGGGAAGTG
TGAGCTGTCTCTAGACGAAATAGACGTCACTGGACGAATCAGAAGACAAA
TAATCATAAGAAGCATGAAATATCCGGAAAAATTGTCCGAATGA
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Synonyms
Publications