rna6014, rna6014 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6014
Unique Name	rna6014
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1239
Alignment location	CM002467.1:364519..366136 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100123g3.6336.mrna
Orig protein id	gnl\|cribi\|Naga_100123g3.6336
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:364519..366136 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100123g3	gene5810	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6014	rna6014-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24679.1	cds5999	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:364519..366136+
coding sequence from alignment at CM002467.1:364519..366136+

mRNA sequence

>rna6014 ID=rna6014|Name=rna6014|organism=Nannochloropsis gaditana|type=mRNA|length=1239bp
ATGTGGATGGCTTGGGGCGGGAGGCTGATCCGCGGGACAACAAGCAGAAA
ACACAGTACAAGCCGCCAGCGACTTGTACACCTGTCATCCCATCATTTAA
GATGTCATCTACCTTGTGTGTATGTGCATGCCCGTCATCCTTGTTGGCTG
GAAAACCCCTCTTGTACAATGCGACGCGGCAGACAAAGATTTCACAGCAC
AGACCTCCAGAAAGAATTGGCATGCCATCCATGCCTCCGCCATGGGTCCT
TTATGTCGATGTTCGGTCCTATTCCAAAGCTTACACGCCACTATTTAGCC
TCCGTATCCTCATCACGACCCTCGCCACCGCCACCTTTAACACCTCGTTC
TTCTCGATTTGTTGAAAGCATGCCAAAGGCCGTTCAACCCTACATGCGAC
TTGCGCGTCTCGACAAGCCAATCGGAACCTATTTATTGCTGTGGCCAGGT
TTTTGGAGCCTTGCCCTTGCAGCTGCTCCCGGTGCGTTGCCGGATTGGAA
GCTTCTGGCCGCTTTTGGGGTAGGGACCCTTGTCATGCGCTCAGCAGGGT
GCACGGTCAACGACCTGTGGGATCGGGACCTTGACAAAAACGTGGCGAGA
ACAAAACACAGACCCATTACATCAGGAGAAATATCTGTCCAAAATGGCGT
TGGGTTCCTTGGAATTCAGCTTTTGGCAGGCCTGGGGGTATTGACGCAGC
TCAACGAGTACACAATCTATCTTGGCATGGCTTCTGTGCCACTGGTTCTC
GCGTACCCCCTCATGAAGCGCTGGACGGACTATCCTCAGCTTTTTCTGGG
AATAACATTCAACTGGGGAGCACTCATGGGCTGGGCAGCCACACACGGCT
CATGCGACTGGCCCATCGTCCTTCCTTTGTATGCCTCCGCCGTGGCTTGG
ACGGTCGTTTACGACACGTTGTACGCGCACCAAGATAAGAGAGACGACTC
ACGGCTTGGTATACGCTCCACTGCACTGACATTCGGTGACAGCGGCACTA
AACCAGTCTTGACCGGGTTGTCGGCGGCCATGGTTGGAGGGTTGCTTCTG
GTGGGAATTGAGGCGGACTTGTCTTGGCACTTTTACTTGGGCACAGGTTT
GACCGCAAGCCACTTAGCTTGGCAGCTCATCACAGCTGATCTGAATTGTT
CAAGCAATTTGTCTGCACGTTTCGAGTCCAATAAATGGGTGGGGGGGCTG
GTCTTCGGGAGTATCGTTGCGGGGAGGTACTTTACTTAG

protein sequence of rna6014

>rna6014-protein ID=rna6014-protein|Name=rna6014|organism=Nannochloropsis gaditana|type=polypeptide|length=393bp
MHVSFQRARLRFKRNIQVPEPRMARTPTIVCIPCRPKMLMQHSLLGALGA
ECRKWSGRHIHSQTPASLKMMMVESEEEKSCPCMSSEPNHNARTHSAGTI
LDEMDDLEAPQPLLSPNLPFFPPLSQWASSPPVLEVSGLSSSASRTPPPL
SPDSSSLHLDGAYSSHSTHPAGALHTRNLFSLPSLAPLRPVFLYLSLALM
RIKGVLISTRKVLAPLLVFAVVGCFHLLGWGLLVYSALTLWRTPGQHAGP
LPPGAAPSRLSSAEAQDHVLPLNPSPIIGAVRLADLEAVRADTSGGADGE
GARALARKWNRATRGLNGEGGGACSGAACLAKAGLRRIKKRRLAFYIATI
SHSGISPACGCGLLAGPSSQQRSYLIYSLKVTNSVGNPGMVCQ

mRNA from alignment at CM002467.1:364519..366136+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6014 ID=rna6014|Name=rna6014|organism=Nannochloropsis gaditana|type=mRNA|length=1618bp|location=Sequence derived from alignment at CM002467.1:364519..366136+ (Nannochloropsis gaditana)
ATGCACGTGAGCTTTCAGCGTGCAAGATTGCGCTTTAAAAGAAATATACA
GGTGGTACCAATGCCATGTTGTTTCATTCCTCTTTAGTAAATGCGATTCG
TTTGTCTTTTgtagggaaaggaaggaccaAGGCTCTCCCCTGTCGGCAAC
GGCTGGGAAACACGGCGTTGTTGAAGTGCCGGAATGCTGCCCGGGCCTGA
GACCAATATATAGCCTGAGCCGAGGATGGCCCGCACGCCTACGATTGTAT
GCATTCCTTGTCGACCAAAAATGCTAATGCAGCACTCGCTGCTTGGTGCC
TTGGGGGCGGAGTGTCGGAAATGGAGTGGTAGGCACATACATTCCCAGAC
ACCAGCGTCcttgaagatgatgatggttgaaagcgaggaagaaaagagtt
GCCCCTGCATGTCATCAGAGGTCTTGCGAGCGCGAATTTTTTTTCATGCG
TACAAAAATTGCTTGTGAGTATTCGGACACATCGGAGGGTGTCAAAGCTG
CCCCTGATTGGAAGTCCCAAAATGTTGCCCTGATCCATCCATGGGCTCAG
GTTTGAAATCTATCTATGTGCTCTGTGCATGTTTTCTTGACAGCCAAACC
ATAATGCCCGTACACATTCAGCAGGCACGATTTTGGATGAAATGGACGAT
CTGGAGGCTCCGCAGCCTTTACTGTCGCCCAATttgcctttttttccccc
tctttctcagTGGGCCAGCTCTCCACCTGTTCTTGAAGTTTCAGGCCTAT
CGTCATCCGCCAGCCgtacgccccctcccctctccccagaCTCTTCGTCA
CTACATCTTGACGGTGCTTATTCATCGCATTCTACTCACCCAGCCGGCGC
CCTCCACACACGGaaccttttttccttgccctccctcgcccctttaCGTC
CTGTATTCCTCTACCTATCTTTGGCTTTGATGCGGATCAAAGGTGTACTT
ATCTCGACCCGTAAGGTCCTGGCACCCCTGCTGGTATTCGCGGTTGTAGG
ATGCTTCCATCTTCTGGGGTGGGGCCTGCTCGTGTACAGCGCACTGACCC
TCTGGAGGACTCCCGGCCAGCACGCCggaccgcttcctcccggcgCTGCG
CCTTCCAGATTGTCCTCCGCGGAAGCGCAGGATCACGTGCTTCCCCTGAA
CCCTTCGCCTATTATAGGAGCAGTCAGGCTGGCGGATCTTGAAGGTTAAG
GCTTGTTATCGTACATGGCCCCTATCCTGGGTTCGTTTTTGTGGTTACAG
CAGTACGAGCGGACACGTCGGGAGGAgcggacggcgagggagcgagagcg
ttggcgaggaagtggaacAGGGCCACTCGGGGCTTAaacggggaaggcgg
cggagcgTGAAAAGGGTGAGGAGCGTAGATTGCAATGGCAGGAATGTGTT
GAAGCTGCTCAGGAGCTGCATGTCTCGCCAAAGCGGGGCTGAGAAGGATT
AAAAAAAGACGGTTGGCCTTCTATATAGCAACAATAAGCCATAGCGGTAT
TTCGCCCGCCTGTGGTTGTGGTCTCCTCGCCGGGCCTTCATCTCAGCAGC
GTTCCTATTTGATATATTCTCTGAAAGTCACCAATTCCGTTGGAAATCCC
GGAATGGTGTGTCAATAG

Coding sequence (CDS) from alignment at CM002467.1:364519..366136+

>rna6014 ID=rna6014|Name=rna6014|organism=Nannochloropsis gaditana|type=CDS|length=5910bp|location=Sequence derived from alignment at CM002467.1:364519..366136+ (Nannochloropsis gaditana)
ATGCACGTGAGCTTTCAGCGTGCAAGATTGCGCTTTAAAAGAAATATACA
GGTGCCTGAGCCGAGGATGGCCCGCACGCCTACGATTGTATGCATTCCTT
GTCGACCAAAAATGCTAATGCAGCACTCGCTGCTTGGTGCCTTGGGGGCG
GAGTGTCGGAAATGGAGTGGTAGGCACATACATTCCCAGACACCAGCGTC
cttgaagatgatgatggttgaaagcgaggaagaaaagagttGCCCCTGCA
TGTCATCAGAGCCAAACCATAATGCCCGTACACATTCAGCAGGCACGATT
TTGGATGAAATGGACGATCTGGAGGCTCCGCAGCCTTTACTGTCGCCCAA
TttgcctttttttccccctctttctcagTGGGCCAGCTCTCCACCTGTTC
TTGAAGTTTCAGGCCTATCGTCATCCGCCAGCCgtacgccccctcccctc
tccccagaCTCTTCGTCACTACATCTTGACGGTGCTTATTCATCGCATTC
TACTCACCCAGCCGGCGCCCTCCACACACGGaaccttttttccttgccct
ccctcgcccctttaCGTCCTGTATTCCTCTACCTATCTTTGGCTTTGATG
CGGATCAAAGGTGTACTTATCTCGACCCGTAAGGTCCTGGCACCCCTGCT
GGTATTCGCGGTTGTAGGATGCTTCCATCTTCTGGGGTGGGGCCTGCTCG
TGTACAGCGCACTGACCCTCTGGAGGACTCCCGGCCAGCACGCCggaccg
cttcctcccggcgCTGCGCCTTCCAGATTGTCCTCCGCGGAAGCGCAGGA
TCACGTGCTTCCCCTGAACCCTTCGCCTATTATAGGAGCAGTCAGGCTGG
CGGATCTTGAAGCAGTACGAGCGGACACGTCGGGAGGAgcggacggcgag
ggagcgagagcgttggcgaggaagtggaacAGGGCCACTCGGGGCTTAaa
cggggaaggcggcggagcCTGCTCAGGAGCTGCATGTCTCGCCAAAGCGG
GGCTGAGAAGGATTAAAAAAAGACGGTTGGCCTTCTATATAGCAACAATA
AGCCATAGCGGTATTTCGCCCGCCTGTGGTTGTGGTCTCCTCGCCGGGCC
TTCATCTCAGCAGCGTTCCTATTTGATATATTCTCTGAAAGTCACCAATT
CCGTTGGAAATCCCGGAATGGTGTGTCAATAGATGCACGTGAGCTTTCAG
CGTGCAAGATTGCGCTTTAAAAGAAATATACAGGTGCCTGAGCCGAGGAT
GGCCCGCACGCCTACGATTGTATGCATTCCTTGTCGACCAAAAATGCTAA
TGCAGCACTCGCTGCTTGGTGCCTTGGGGGCGGAGTGTCGGAAATGGAGT
GGTAGGCACATACATTCCCAGACACCAGCGTCcttgaagatgatgatggt
tgaaagcgaggaagaaaagagttGCCCCTGCATGTCATCAGAGCCAAACC
ATAATGCCCGTACACATTCAGCAGGCACGATTTTGGATGAAATGGACGAT
CTGGAGGCTCCGCAGCCTTTACTGTCGCCCAATttgcctttttttccccc
tctttctcagTGGGCCAGCTCTCCACCTGTTCTTGAAGTTTCAGGCCTAT
CGTCATCCGCCAGCCgtacgccccctcccctctccccagaCTCTTCGTCA
CTACATCTTGACGGTGCTTATTCATCGCATTCTACTCACCCAGCCGGCGC
CCTCCACACACGGaaccttttttccttgccctccctcgcccctttaCGTC
CTGTATTCCTCTACCTATCTTTGGCTTTGATGCGGATCAAAGGTGTACTT
ATCTCGACCCGTAAGGTCCTGGCACCCCTGCTGGTATTCGCGGTTGTAGG
ATGCTTCCATCTTCTGGGGTGGGGCCTGCTCGTGTACAGCGCACTGACCC
TCTGGAGGACTCCCGGCCAGCACGCCggaccgcttcctcccggcgCTGCG
CCTTCCAGATTGTCCTCCGCGGAAGCGCAGGATCACGTGCTTCCCCTGAA
CCCTTCGCCTATTATAGGAGCAGTCAGGCTGGCGGATCTTGAAGCAGTAC
GAGCGGACACGTCGGGAGGAgcggacggcgagggagcgagagcgttggcg
aggaagtggaacAGGGCCACTCGGGGCTTAaacggggaaggcggcggagc
CTGCTCAGGAGCTGCATGTCTCGCCAAAGCGGGGCTGAGAAGGATTAAAA
AAAGACGGTTGGCCTTCTATATAGCAACAATAAGCCATAGCGGTATTTCG
CCCGCCTGTGGTTGTGGTCTCCTCGCCGGGCCTTCATCTCAGCAGCGTTC
CTATTTGATATATTCTCTGAAAGTCACCAATTCCGTTGGAAATCCCGGAA
TGGTGTGTCAATAGATGCACGTGAGCTTTCAGCGTGCAAGATTGCGCTTT
AAAAGAAATATACAGGTGCCTGAGCCGAGGATGGCCCGCACGCCTACGAT
TGTATGCATTCCTTGTCGACCAAAAATGCTAATGCAGCACTCGCTGCTTG
GTGCCTTGGGGGCGGAGTGTCGGAAATGGAGTGGTAGGCACATACATTCC
CAGACACCAGCGTCcttgaagatgatgatggttgaaagcgaggaagaaaa
gagttGCCCCTGCATGTCATCAGAGCCAAACCATAATGCCCGTACACATT
CAGCAGGCACGATTTTGGATGAAATGGACGATCTGGAGGCTCCGCAGCCT
TTACTGTCGCCCAATttgcctttttttccccctctttctcagTGGGCCAG
CTCTCCACCTGTTCTTGAAGTTTCAGGCCTATCGTCATCCGCCAGCCgta
cgccccctcccctctccccagaCTCTTCGTCACTACATCTTGACGGTGCT
TATTCATCGCATTCTACTCACCCAGCCGGCGCCCTCCACACACGGaacct
tttttccttgccctccctcgcccctttaCGTCCTGTATTCCTCTACCTAT
CTTTGGCTTTGATGCGGATCAAAGGTGTACTTATCTCGACCCGTAAGGTC
CTGGCACCCCTGCTGGTATTCGCGGTTGTAGGATGCTTCCATCTTCTGGG
GTGGGGCCTGCTCGTGTACAGCGCACTGACCCTCTGGAGGACTCCCGGCC
AGCACGCCggaccgcttcctcccggcgCTGCGCCTTCCAGATTGTCCTCC
GCGGAAGCGCAGGATCACGTGCTTCCCCTGAACCCTTCGCCTATTATAGG
AGCAGTCAGGCTGGCGGATCTTGAAGCAGTACGAGCGGACACGTCGGGAG
GAgcggacggcgagggagcgagagcgttggcgaggaagtggaacAGGGCC
ACTCGGGGCTTAaacggggaaggcggcggagcCTGCTCAGGAGCTGCATG
TCTCGCCAAAGCGGGGCTGAGAAGGATTAAAAAAAGACGGTTGGCCTTCT
ATATAGCAACAATAAGCCATAGCGGTATTTCGCCCGCCTGTGGTTGTGGT
CTCCTCGCCGGGCCTTCATCTCAGCAGCGTTCCTATTTGATATATTCTCT
GAAAGTCACCAATTCCGTTGGAAATCCCGGAATGGTGTGTCAATAGATGC
ACGTGAGCTTTCAGCGTGCAAGATTGCGCTTTAAAAGAAATATACAGGTG
CCTGAGCCGAGGATGGCCCGCACGCCTACGATTGTATGCATTCCTTGTCG
ACCAAAAATGCTAATGCAGCACTCGCTGCTTGGTGCCTTGGGGGCGGAGT
GTCGGAAATGGAGTGGTAGGCACATACATTCCCAGACACCAGCGTCcttg
aagatgatgatggttgaaagcgaggaagaaaagagttGCCCCTGCATGTC
ATCAGAGCCAAACCATAATGCCCGTACACATTCAGCAGGCACGATTTTGG
ATGAAATGGACGATCTGGAGGCTCCGCAGCCTTTACTGTCGCCCAATttg
cctttttttccccctctttctcagTGGGCCAGCTCTCCACCTGTTCTTGA
AGTTTCAGGCCTATCGTCATCCGCCAGCCgtacgccccctcccctctccc
cagaCTCTTCGTCACTACATCTTGACGGTGCTTATTCATCGCATTCTACT
CACCCAGCCGGCGCCCTCCACACACGGaaccttttttccttgccctccct
cgcccctttaCGTCCTGTATTCCTCTACCTATCTTTGGCTTTGATGCGGA
TCAAAGGTGTACTTATCTCGACCCGTAAGGTCCTGGCACCCCTGCTGGTA
TTCGCGGTTGTAGGATGCTTCCATCTTCTGGGGTGGGGCCTGCTCGTGTA
CAGCGCACTGACCCTCTGGAGGACTCCCGGCCAGCACGCCggaccgcttc
ctcccggcgCTGCGCCTTCCAGATTGTCCTCCGCGGAAGCGCAGGATCAC
GTGCTTCCCCTGAACCCTTCGCCTATTATAGGAGCAGTCAGGCTGGCGGA
TCTTGAAGCAGTACGAGCGGACACGTCGGGAGGAgcggacggcgagggag
cgagagcgttggcgaggaagtggaacAGGGCCACTCGGGGCTTAaacggg
gaaggcggcggagcCTGCTCAGGAGCTGCATGTCTCGCCAAAGCGGGGCT
GAGAAGGATTAAAAAAAGACGGTTGGCCTTCTATATAGCAACAATAAGCC
ATAGCGGTATTTCGCCCGCCTGTGGTTGTGGTCTCCTCGCCGGGCCTTCA
TCTCAGCAGCGTTCCTATTTGATATATTCTCTGAAAGTCACCAATTCCGT
TGGAAATCCCGGAATGGTGTGTCAATAGATGCACGTGAGCTTTCAGCGTG
CAAGATTGCGCTTTAAAAGAAATATACAGGTGCCTGAGCCGAGGATGGCC
CGCACGCCTACGATTGTATGCATTCCTTGTCGACCAAAAATGCTAATGCA
GCACTCGCTGCTTGGTGCCTTGGGGGCGGAGTGTCGGAAATGGAGTGGTA
GGCACATACATTCCCAGACACCAGCGTCcttgaagatgatgatggttgaa
agcgaggaagaaaagagttGCCCCTGCATGTCATCAGAGCCAAACCATAA
TGCCCGTACACATTCAGCAGGCACGATTTTGGATGAAATGGACGATCTGG
AGGCTCCGCAGCCTTTACTGTCGCCCAATttgcctttttttccccctctt
tctcagTGGGCCAGCTCTCCACCTGTTCTTGAAGTTTCAGGCCTATCGTC
ATCCGCCAGCCgtacgccccctcccctctccccagaCTCTTCGTCACTAC
ATCTTGACGGTGCTTATTCATCGCATTCTACTCACCCAGCCGGCGCCCTC
CACACACGGaaccttttttccttgccctccctcgcccctttaCGTCCTGT
ATTCCTCTACCTATCTTTGGCTTTGATGCGGATCAAAGGTGTACTTATCT
CGACCCGTAAGGTCCTGGCACCCCTGCTGGTATTCGCGGTTGTAGGATGC
TTCCATCTTCTGGGGTGGGGCCTGCTCGTGTACAGCGCACTGACCCTCTG
GAGGACTCCCGGCCAGCACGCCggaccgcttcctcccggcgCTGCGCCTT
CCAGATTGTCCTCCGCGGAAGCGCAGGATCACGTGCTTCCCCTGAACCCT
TCGCCTATTATAGGAGCAGTCAGGCTGGCGGATCTTGAAGCAGTACGAGC
GGACACGTCGGGAGGAgcggacggcgagggagcgagagcgttggcgagga
agtggaacAGGGCCACTCGGGGCTTAaacggggaaggcggcggagcCTGC
TCAGGAGCTGCATGTCTCGCCAAAGCGGGGCTGAGAAGGATTAAAAAAAG
ACGGTTGGCCTTCTATATAGCAACAATAAGCCATAGCGGTATTTCGCCCG
CCTGTGGTTGTGGTCTCCTCGCCGGGCCTTCATCTCAGCAGCGTTCCTAT
TTGATATATTCTCTGAAAGTCACCAATTCCGTTGGAAATCCCGGAATGGT
GTGTCAATAG

Synonyms

Publications