rna6013, rna6013 (mRNA) Nannochloropsis gaditana

Overview
Namerna6013
Unique Namerna6013
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1866
Alignment locationCM002467.1:363257..364495 +

Link to JBrowse

Properties
Property NameValue
Product4-hydroxybenzoate polyprenyl transferase
Orig transcript idgnl|cribi|Naga_100123g4.6341.mrna
Orig protein idgnl|cribi|Naga_100123g4.6341
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:363257..364495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100123g4gene5809Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6013rna6013-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24684.1cds5998Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6013 ID=rna6013|Name=rna6013|organism=Nannochloropsis gaditana|type=mRNA|length=1866bp
GATACAGGACACGAAAACGCAATGCATCGGCGAAATTTCCTACCTCCGCA
GCTTTTGAGCGGCCTACTGATCGCCTCCTTACCTGGAGCGATCTTTTTTA
CCGTCCCTCATCGTCCTTCCATCAGACAAGCCCTACCCTGTTCCGGCGTA
CTGCCCATGGCGATCAGTCGACATCAGTCCAGTCTCTTTGCCAGCACCAC
CGCGCCATCAAGATTGAAAGATACTTTGATTGAAGAACACGATGTGGTTG
TCATTGGATCCGGCATTGGAGGGCTAAGTTGTGCCTCGTTGTGCTCTGCG
ACCTACGGACTGGACGTGGCCGTAGTTGAAAGCCACTACCATTGTGGTGG
AGCCGCACACGCATTTGAAATCGACGGCTTCATTTTTGATTCTGGACCCT
CACTCTTTAGTGGTTTATCACAAGATGCAAGTCCCAATCCTTTGTTACAT
GTCTTCCAAGCTATAGACGAAAAAGTGGATTGGCTAACGTATAATACGTG
GGGCGTTTGTCTACCGTACGGGAACTTTGCCGCCACTATTGGACCCGAGC
CGTTTCGAGACATATTGAAAACATACGGGGGTAAGGATGCTCAGGAGCAA
TGGGAGCGGTTTATGGCTCTCATCAATCCTCTCTCAGAGGCAGCCATGGC
CCTCCCCCCCTCGGTGCTTCGGAACGATCCGGGCGTCTTGCTGACCATGG
CCAGGTTTTGGCAGGCGGTCGCCACCACAATCCCTAAAGGCCCTCAGCTC
CAGCAGCCTTTCTCGACGGTCCTTGCAGAAGCCGGCGTGACCGACCCGTT
CATCCGGGACTGGCTCAGCTTGCTATGCTTCCTGCTGCAAGGTATGACTG
AGGAAGGAACCATGACAGCGGTCATGGCCTACATGCTGGCCGATTGGTAC
CGTCCGAACGTGCTGCTCGACTATCCGCGGGGGGGTACAGGCGCTGTGAT
AGATGCCCTCGTCCGGGGCGTCACGAAGACAGGCGGGAAGGTTTACACCA
GCGCGCACGTGGAAGAGATTCTGATAGAGGGCGATCGCGCGGTGGGGGTG
CGTCTCAGGTCTGGGAAGATCCTGCGGGCTCGCAGAGGCGTGGTGTCCAA
TGCTTCGGTCTGGAACACTGCCCGGCTCCTGCCTGCGGGCCTTTTGCCCG
AATACCAGGAGCGAGTGGGGCGCGTGTCTCAGACAGAGAGCTTCCTTCAC
CTCCACCTCGGAATCGCCGCCGAAGGCCTCCCCGGGGACCTGCAGTGCCA
TTACGCCGTGGTCGATGACTTCTCTCAGCCCATCAACAGCCCAGGGAACG
TCGTCATCATCTCCATCCCTAGCCTTCTAGATCCTTCTCTGGCGCCCACC
GGCTCGCACACCATTCACGCCTACACCGCAGGAAACGAGCCCTTCGCCCT
CTGGGAGGGCCTGGACCGCCAGGGCCCTGACTACAAGCGGCTGAAAGAGG
AGCGGAGCGAGATTTTGTGGCGGGCCATCGAGAAGGTCATCCCCGACGTC
CGTGCGCGCATCAAGCTCTCCTTGGCCGGGACGCCCTTGACGCACGCCCG
CTTCTTGCGACGGGACAGGGGCACCTACGGCCCCGCGATCAGGGCGGGAA
AGGATTCCTACCCCTCTGCTAATCCCCTCCCAGGCCTGCACCTGTGCGGG
GACAGCGTCTTTCCCGGGATAGGTATGCCTGCCGTGGCCGCGTCGGGGAG
CATTGCCGCCAATAACCTGGTCTCGGTGCGACAGCACTGGAAGATGCTTG
ACAAGCTCAGGTTGGAGTAGGCGATCAAATAAAAGCTTTCACCTTGCAAA
GTAATGAGAGCGACAGTTCACACGACACGTACACGTTGCGTTCAGATGAA
CACGCTGTTTTTTTAA
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protein sequence of rna6013

>rna6013-protein ID=rna6013-protein|Name=rna6013|organism=Nannochloropsis gaditana|type=polypeptide|length=412bp
MWMAWGGRLIRGTTSRKHSTSRQRLVHLSSHHLRCHLPCVYVHARHPCWL
ENPSCTMRRGRQRFHSTDLQKELACHPCLRHGSFMSMFGPIPKLTRHYLA
SVSSSRPSPPPPLTPRSSRFVESMPKAVQPYMRLARLDKPIGTYLLLWPG
FWSLALAAAPGALPDWKLLAAFGVGTLVMRSAGCTVNDLWDRDLDKNVAR
TKHRPITSGEISVQNGVGFLGIQLLAGLGVLTQLNEYTIYLGMASVPLVL
AYPLMKRWTDYPQLFLGITFNWGALMGWAATHGSCDWPIVLPLYASAVAW
TVVYDTLYAHQDKRDDSRLGIRSTALTFGDSGTKPVLTGLSAAMVGGLLL
VGIEADLSWHFYLGTGLTASHLAWQLITADLNCSSNLSARFESNKWVGGL
VFGSIVAGRYFT
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mRNA from alignment at CM002467.1:363257..364495+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6013 ID=rna6013|Name=rna6013|organism=Nannochloropsis gaditana|type=mRNA|length=1239bp|location=Sequence derived from alignment at CM002467.1:363257..364495+ (Nannochloropsis gaditana)
ATGTGGATGGCttggggcgggaggctgaTCCGCGGGACAACAAGCAGAAA
ACACAGTACAAGCCGCCAGCGACTTGTACACCTGTCATCCCATCATTTAA
GATGTCATCTACCTTGTGTGTATGTGCATGCCCGTCATCCTTGTTGGCTG
GAAAACCCCTCTTGTACAATGCGACGCGGCAGACAAAGATTTCACAGCAC
AGACCTCCAGAAAGAATTGGCATGCCATCCATGCCTCCGCCATGGGTCCT
TTATGTCGATGTTCGGTCCTATTCCAAAGCTTACACGCCACTATTTAGCC
TCCGTATCCTCATCACGACcctcgccaccgccacctttAACACCTCGTTC
TTCTCGATTTGTTGAAAGCATGCCAAAGGCCGTTCAACCCTACATGCGAC
TTGCGCGTCTCGACAAGCCAATCGGAACCTATTTATTGCTGTGGCCAGGT
TTTTGGAGCCTTGCCCTTGCAGCTGCTCCCGGTGCGTTGCCGGATTGGAA
GCTTCTGGCCGCTTTTGGGGTAGGGACCCTTGTCATGCGCTCAGCAGGGT
GCACGGTCAACGACCTGTGGGATCGGGACCTTGACAAAAACGTGGCGAGA
ACAAAACACAGACCCATTACATCAGGAGAAATATCTGTCCAAAATGGCGT
TGGGTTCCTTGGAATTCAGCTTTTGGCAGGCCTGGGGGTATTGACGCAGC
TCAACGAGTACACAATCTATCTTGGCATGGCTTCTGTGCCACTGGTTCTC
GCGTACCCCCTCATGAAGCGCTGGACGGACTATCCTCAGCTTTTTCTGGG
AATAACATTCAACTGGGGAGCACTCATGGGCTGGGCAGCCACACACGGCT
CATGCGACTGGCCCATCGTCCTTCCTTTGTATGCCTCCGCCGTGGCTTGG
ACGGTCGTTTACGACACGTTGTACGCGCACCAAGATAAGAGAGACGACTC
ACGGCTTGGTATACGCTCCACTGCACTGACATTCGGTGACAGCGGCACTA
AACCAGTCTTGACCGGGTTGTCGGCGGCCATGGTTGGAGGGTTGCTTCTG
GTGGGAATTGAGGCGGACTTGTCTTGGCACTTTTACTTGGGCACAGGTTT
GACCGCAAGCCACTTAGCTTGGCAGCTCATCACAGCTGATCTGAATTGTT
CAAGCAATTTGTCTGCACGTTTCGAGTCCAATAAATGGGTGGGGGGGCTG
GTCTTCGGGAGTATCGTTGCGGGGAGGTACTTTACTTAG
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Coding sequence (CDS) from alignment at CM002467.1:363257..364495+

>rna6013 ID=rna6013|Name=rna6013|organism=Nannochloropsis gaditana|type=CDS|length=1239bp|location=Sequence derived from alignment at CM002467.1:363257..364495+ (Nannochloropsis gaditana)
ATGTGGATGGCttggggcgggaggctgaTCCGCGGGACAACAAGCAGAAA
ACACAGTACAAGCCGCCAGCGACTTGTACACCTGTCATCCCATCATTTAA
GATGTCATCTACCTTGTGTGTATGTGCATGCCCGTCATCCTTGTTGGCTG
GAAAACCCCTCTTGTACAATGCGACGCGGCAGACAAAGATTTCACAGCAC
AGACCTCCAGAAAGAATTGGCATGCCATCCATGCCTCCGCCATGGGTCCT
TTATGTCGATGTTCGGTCCTATTCCAAAGCTTACACGCCACTATTTAGCC
TCCGTATCCTCATCACGACcctcgccaccgccacctttAACACCTCGTTC
TTCTCGATTTGTTGAAAGCATGCCAAAGGCCGTTCAACCCTACATGCGAC
TTGCGCGTCTCGACAAGCCAATCGGAACCTATTTATTGCTGTGGCCAGGT
TTTTGGAGCCTTGCCCTTGCAGCTGCTCCCGGTGCGTTGCCGGATTGGAA
GCTTCTGGCCGCTTTTGGGGTAGGGACCCTTGTCATGCGCTCAGCAGGGT
GCACGGTCAACGACCTGTGGGATCGGGACCTTGACAAAAACGTGGCGAGA
ACAAAACACAGACCCATTACATCAGGAGAAATATCTGTCCAAAATGGCGT
TGGGTTCCTTGGAATTCAGCTTTTGGCAGGCCTGGGGGTATTGACGCAGC
TCAACGAGTACACAATCTATCTTGGCATGGCTTCTGTGCCACTGGTTCTC
GCGTACCCCCTCATGAAGCGCTGGACGGACTATCCTCAGCTTTTTCTGGG
AATAACATTCAACTGGGGAGCACTCATGGGCTGGGCAGCCACACACGGCT
CATGCGACTGGCCCATCGTCCTTCCTTTGTATGCCTCCGCCGTGGCTTGG
ACGGTCGTTTACGACACGTTGTACGCGCACCAAGATAAGAGAGACGACTC
ACGGCTTGGTATACGCTCCACTGCACTGACATTCGGTGACAGCGGCACTA
AACCAGTCTTGACCGGGTTGTCGGCGGCCATGGTTGGAGGGTTGCTTCTG
GTGGGAATTGAGGCGGACTTGTCTTGGCACTTTTACTTGGGCACAGGTTT
GACCGCAAGCCACTTAGCTTGGCAGCTCATCACAGCTGATCTGAATTGTT
CAAGCAATTTGTCTGCACGTTTCGAGTCCAATAAATGGGTGGGGGGGCTG
GTCTTCGGGAGTATCGTTGCGGGGAGGTACTTTACTTAG
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Synonyms
Publications