rna6007, rna6007 (mRNA) Nannochloropsis gaditana

Overview
Namerna6007
Unique Namerna6007
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1875
Alignment locationCM002467.1:339266..340354 -

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Properties
Property NameValue
Producthistone 3
Orig transcript idgnl|cribi|Naga_100123g12.6342.mrna
Orig protein idgnl|cribi|Naga_100123g12.6342
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:339266..340354 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100123g12gene5803Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24685.1cds5992Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6007rna6007-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6007 ID=rna6007|Name=rna6007|organism=Nannochloropsis gaditana|type=mRNA|length=1875bp
CCCGACCTGCCCGCGTCTCTGGGTTTAGCATCAGCTTCACGTTCATTTGT
TTGAAATCAGGAAATTCATCGCGTCGCTCACTCAAACAGGAGACATGCCA
TCGACAATCCGAAGTACGTCGCCACCACGGAGCAATGAAAACAGGAATGG
AACCAGTTTATGGCGTCTGAGTGGCGTGCTTCCAGCCGGTTCCCAACATT
CGCCCTCGGACTACGCACGCCTGGAGACAGGGCATGGCTGTGGCGCGGAC
CGAAACCACCGGGTGCTCGAGGCGCGGGGCGGGGCGGACGAGGAGGAAGA
CGAGGTAGAGATCCTCTTTGCCTCGCCAGCGACCCCCACGGACGACCAGG
GTCGAGCCTCCACGTTCCTGGTCTCTTCCTCTTCCCCCTCCAGCTCGCCC
CCCGCCCCCCACGCCACGGCCTTGCCCTCCGTGAGAACCCTCCTACGGCC
CCTGGGCGCCATCTTCTCCCTCTCCTCGTCCTCTGCCTCCGGATGTAGGC
ATGGAGGCGCCAGGGGCGCGGGAGGAAGTCTCCATCTTCCCCCTTCCCGG
GGCTCTCCCCCGAGCCGATTTCTGCGGCGGATGCGGACGTCATCCAGCCA
CGAGCACGCCGAAGGGCAGGGACGCACCTCCTCCTCCTCCTCCTCCTTCT
CCTCCTCCTCCTCGCCGCAGCCCCCCACCGCCAGCGGGGCCTTCGTCTCT
CCGCGTTTCCACAGCCACGCCCCGCCCTGGGTGCAGGTCACCTACTTCCT
CCTCCTCGGCTGCCTCTTCCTCGCCGCCCTGGTCGACAGCTTCACGAGCC
GGCACCTCTACCATCTGCTCGAGCATCTCTTCGCCTGGGTGGAGGAGCAT
CAGATCCTGGGCCCCCTGGTCTTCTGGTCGGCTGTCGTCGTCTTCTCGGT
CGTGTGCGTGCCGGAGAGCGCGCTCACCGTGGGCGGCGGCTACATCTTCG
CCAAGGCCCATGGGGTCGGCTGGGGCATCCTCCTCTGCACCTTCCTCATG
ATGGCGGGGGGCGTGGTCGGCTCCGTCATAGCCTTTTTGGTCGCGCGCTA
CCTCGCATTCGACACGGTGCAGCGCTGGGCTCGCCGGCACCGACTCCTCC
GGGCACTGGACCTCTCTCTGGTGGAAAATGGCGCGAAAATGGTCTTCTTG
CTCCGCCTCTCCCCCTTCCTCCCTGCGCCACCGCTCTCCTATTTGTTGGG
CACCACCAGCGTCAAGCTCTCGGATTTCGTGCTGGGCAGCACAGGCATGC
TTCCCTGGATCGTGACTTGTTCGTATCTCGGGAGCGCCTTGAGGGGCGTG
GCGGACGTGGCCGGGAAGGGGAGGAGGGGCCAAAGCAAGTGGGCGTACGC
CCTGTACGCGCTGGGGGCGGTGGGGACGATGGGGGTGGTGGCGGCCATCG
GCATCTACACGCGGAGGGCGATGGAGGAGATTTTGCGGGAGGAGCCCAGC
GAGGGGGAGGAGAGGAAGGAAGCTGAGGACCGGGGGAGGAGGGAGGACGG
AGTGCACACTGAGATGAATGCGGTGTTGCGGGTGGAAAACAGTGGGGAAG
AAGAACAAGGGATGGAAGGGCGGGAGGGGGTTGGGGGGCGGCAGACGGAG
GAGGGAGAGGAGGGGAAGGAGAACGTGGCGACCGAAAAAAAAGGCGGGGG
AGATGGTGGAGTGGAGGGAACCAGCTCCTTCGTGGGGCCATGCTCAGGAG
GCAGAGGGTGCGGCGACGCCGCTGTGGTCTAGGGGGAAGGAGAATCGGAC
GGGCGAGGGGGCCGCTTCCTTGGGCTGGGCTGCGCTTTTGTGTAGGGACG
AGGTTTTATAATGCGAAAAAGCGAGAATTGCCTCGTGTAGTGTTTAAAGA
AATATACATATAACGTCTTCTGTTC
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protein sequence of rna6007

>rna6007-protein ID=rna6007-protein|Name=rna6007|organism=Nannochloropsis gaditana|type=polypeptide|length=136bp
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALR
EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEATEAY
LVGLFEDTNLAAIHAKRVTIMPKDVQLARRIRGERS
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mRNA from alignment at CM002467.1:339266..340354-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6007 ID=rna6007|Name=rna6007|organism=Nannochloropsis gaditana|type=mRNA|length=1089bp|location=Sequence derived from alignment at CM002467.1:339266..340354- (Nannochloropsis gaditana)
TCGAAGACGGGCGTGTTGCCCGTCGTCAAGTGAACATTTATCAGTTGCCC
CGTGTGCTGTGGTGCATGTTACTCGGCAAACACATTTCTTCGAATCGAGC
TTTCTCGATTATTTCACGGAACACCACTTCCGTCAGGAAAGACATACGAC
TGCAATAGAGTTTGCGGGTATCATGACACTAATTGCATCTATTTACTACG
TCGTTCACTCCACAGCTCAAAACCCTCTTATAAAATGGCCCGCACCAAGC
AAACTGCCCGCAAGTCCACCGGCGGCAAGGCGCCCCGCAAGCAGCTCGCC
ACCAAGGCGGCACGCAAGTCCGCACCCGCCACCGGCGGTGTGAAGAAGCC
CCACCGTTACCGCCCTGGAACTGTGGCCCTCCGTGAGATCCGCCGCTACC
AGAAGAGCACTGAGCTCCTCATCCGCAAGCTGCCCTTCCAGCGCCTGGTC
CGTGAGATCGCTCAGGACTTCAAGACCGACCTGCGATTCCAGGGGTCTGC
CGTCCTTGCGCTGCAGGAGGCTACTGAGGCTTACCTCGTGGGCCTCTTCG
AGGACACCAACTTGGCTGCCATCCACGCCAAGCGTGTGACGATCATGCCC
AAGGACGTGCAGCTCGCCCGCCGCATCCGTGGAGAGCGCTCTTAAGTATG
CGCTCTCTCCGTGAGAAAGTGTGGTGTTTCGACCAGTAAAGAGACTTCAA
AAATCGAAAAATATCAGACGAAACCCACATCTCGACCACCAGCCCAGGGT
TCTCTTGAACCCCCCGTGTTCTTCTCAGCCCTCGCTTCGCTTTCTTTTGC
TGCACCTGCCGATGTGCATGTCGACGTTGTTACGTTGTTGCCCTGGATGC
CCGACAATACTCTGTGGTTCAATGCAGGGGCAGTGGCTCGTGGTATGCCT
TGTGCAGTCCAGCGGCCCACCGCTTCCCCCGGCGTGCGTGGAATCGCCTC
CGGCCAGTCCTTTAAGAGAGGATATAGGCGGGTTCCTCCTAGGCGAAGTA
CAGATAACAGAACGATGTGCGGACGCCCCAAAATTTGAAACATGTCGCAA
ACAGAACAGATTTTTCAATCCTATTCGAACAGAAGACGT
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Coding sequence (CDS) from alignment at CM002467.1:339266..340354-

>rna6007 ID=rna6007|Name=rna6007|organism=Nannochloropsis gaditana|type=CDS|length=411bp|location=Sequence derived from alignment at CM002467.1:339266..340354- (Nannochloropsis gaditana)
ATGGCCCGCACCAAGCAAACTGCCCGCAAGTCCACCGGCGGCAAGGCGCC
CCGCAAGCAGCTCGCCACCAAGGCGGCACGCAAGTCCGCACCCGCCACCG
GCGGTGTGAAGAAGCCCCACCGTTACCGCCCTGGAACTGTGGCCCTCCGT
GAGATCCGCCGCTACCAGAAGAGCACTGAGCTCCTCATCCGCAAGCTGCC
CTTCCAGCGCCTGGTCCGTGAGATCGCTCAGGACTTCAAGACCGACCTGC
GATTCCAGGGGTCTGCCGTCCTTGCGCTGCAGGAGGCTACTGAGGCTTAC
CTCGTGGGCCTCTTCGAGGACACCAACTTGGCTGCCATCCACGCCAAGCG
TGTGACGATCATGCCCAAGGACGTGCAGCTCGCCCGCCGCATCCGTGGAG
AGCGCTCTTAA
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Synonyms
Publications