rna600, rna600 (mRNA) Nannochloropsis gaditana

Overview
Namerna600
Unique Namerna600
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2440
Alignment locationCM002455.1:1499296..1500743 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100173g7.4686.mrna
Orig protein idgnl|cribi|Naga_100173g7.4686
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1499296..1500743 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100173g7gene577Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30080.1cds600Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna600rna600-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna600 ID=rna600|Name=rna600|organism=Nannochloropsis gaditana|type=mRNA|length=2440bp
GCACACAGGTTTCAAGGCGGCGGAGGAGGTTGGCTGCGCTATCCTTTCGG
ACATCGTTTTCCTGATATTGCGTTTCTCAGTTTCCATATGCCCTCGCCTG
ATCCGACAAATCAAAACCCAGTCAAAGATGCAGCTCTTTCTCAAGGACAA
CCTTCTCTTCGTACGGCGCACACCACATGGGGCGGCTCGTACATTATGCC
AAAGGCGCCTCCTTCACTTTCTGGTCCTAACTCTGCCGCAGAGGGAGGGA
CAAGTGCGTCAAGGATAGGAAGTCAACTTCGCTCTTCTTTCATAAATGAG
ATCAATACGTTGACAAAGCCCACATTGAGCCGTTTGGCAGTTTCTTACGT
GGGTTCCGCTCCGTTTTCTGACCCGCCGGGCCTCGCACGGATCCCCACAA
CTACGGAATTGTTCCCTGAAGGAGTGAAGGGCAACAAAGAAGCTCAAGCG
CTCTGTGTACCCGGAACCGCAGGGAATGTTTTCATCCTAGGTTGCGCATG
CTTCATTATGGTGGGCAGTGTTGCGGCAAAAGAAGTCTTAATGGCAGTCT
CCGTGCAGCTCATGGCGCACATGCCTATGTCCATAAAGACCTACGGGGTA
GTCTCCGGCTTACCCTCCCTCTCCTCCATATTCGCCTGTTTGGTCGGAGG
TCCGGTGATTGATGCGATAGGGGCCGATAAAGCTTGCGTTCTCTTCACTT
TCATCGTCTTGCTAGGTAACGCCATGGCCACTGTTTCCGTTAGCCTTCGA
TCCCTATCCCTCCTTTTGGTGGGCCAAGTTGTACTGGGTGTGGGAGAGAA
ACCCTTGGGCTCGGGGCAGCTTGTCTTTATCCGCCTGGCGTGTGATCCCG
CCAAAGTCGGCTTTTACTTTGCCGTAGCCTCCGCCGCATATCGGGCTGCT
TCTTTCGGCACTTTTATCCTGTCACCCTTGGTAGCAGAGTCATCAACGTA
CGGCTTTCAAGCGAGCATGTGGATGGGCACAATTTTGTGTTTTTTATCCT
TCCTAAGTGCCTTTCCCATGCTGGGAAAATTGAAACATCTAGAACCCTTC
CTGAAGGCGGCTCCTGTAGTGGTGGGGGAGGAAGAGGGGGAAGAGGTGAT
CTTGATGAAGAGTAATTTAGAGATGGAGCAAGTGGAAGAGGAGGAGGACG
GACAGAGTGAAGACAAGGGGAAGAGCGCGAGCGGGGAAGGCTCTTGGCGG
GGATGGAGGGCCTACTTCCAGGGTCTTTGTAACCTTGACTTTTTCGTTTG
GCTGGTAGGATATGAGGGCAAAGGGAGGGTATGTGAATTTGACGGTCTCT
CTCATTCCAAACCTTCCTCTTGCTCGCTCTCCTTTTCTAGGTGGCCGCAT
GCGCCCTGTACATCACCTTCTTCGTCCTTCAGACCTTTGCGGTCGAGTAT
CTGCAGACAGATCATCATCTCAGCGCGCGACAAGCAGCCTTTGCCACCTC
ACTCTTCGACGTTTTTGGAATTTTCCTTGGCCCATTTCTGGGGAGATGTG
TGGACCGAGAACTGGGCAAAGGGGAAGGAAATGAGTGGGTATGCATGTCT
TGCCGACCTTGGCCTGCCGGATCTATGCTAGCTTGGGGTTCAGGATTCAT
GGCGGTGGGGCTCTTGTTACCAATTGTTGACCCGCGCAGGTGGGTGCGGA
AGGAGGCTAGGGATCTTGTGCGGGAAGGAAAGAGAAGAGCAAATCAGGGT
AGAAGGAGGAAGTCATGGAGAGGCCTTGGGGACACTTTTGTCATTACTCT
CTTCGGATCTGCATCCCATTTTCTGCCCCTTTGCTATTTTCAATATATGT
AGTTGAATTGTGGGGATTTTTCTCTTCTGTCTATTCAACCTTTTTTCTCC
TCCTCTTCCTGGATCTTTTCCCTCACTTCCTGACGGCTATTCCTTCCTGA
TGCTTCCTGGTCCCTTTTTCAGCTGGCTAGTTGGCTTTGTCCTCATTTCC
TTTGGATTTGCCTTAGCCTCCGCCGCAATATGGCCTTTGATGCCGCTCTT
CGTACCGTTGGACAGTCTGGGGTTGGCTTTAGGGGTAACCACATCTCTGT
TGGAAACAGGTATATTGGGGGTGAACGTCTTCATCGGACAAATTCTCGGC
GCGGGCCATGGATATCAACACGCCGTGTTTCCTATCTTCCTAAGCTTGAT
CATGCTAACATTAGCAATGACAGGGATATTATTCCCGCGTCTCAAAGTCA
AAGTAGAGGCAGGTAGAAGAGAAAGTGAAGCTAGAAGTGAGGGAGCGAAA
GAAGATAGGTTTGGCTAGAGCGAAACAGGAAATTAAATGTAACGAAATGA
CCACTTCCAATCGAGTCCGAAATATTCTTACTCATTCCTCAAATGCGAAA
AGGAGCTTTATAAAAGTGAGAAAAATTTAAGAGTTTTTGATAAGATACAA
AATTACTTTGTCCTTCGGTATGACGTTCCCTATAGCTGCC
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protein sequence of rna600

>rna600-protein ID=rna600-protein|Name=rna600|organism=Nannochloropsis gaditana|type=polypeptide|length=334bp
MTRLVHVHLFSEGRQATYVLCSSMPYYRSLLPPLRLDYVTSSTHMASAGT
AQLSFSAFLSAAVRTTFWLDITLSFLPPSSWLILECACKLIFSHIKHANA
WRCVDLGPIYLHSLPSCLTPADIVQNIRFEFIERKASLWRLRRAWATIEQ
FAPAGFSWTLNKGIEEDALGRWEYALGCSLPPDLRASFLIHDGQSYMAQP
GMMLGGGRLLSLEDVVIQACRMEQSQSDQDRRCMIEVAEGADVQSAKTGK
GGEDEGDRNEGEEGWRMVPLSEGARGRSVCIALPKRWKKKRVRGRRKERE
TAEDEGLLGGVYIVTALSCRKLADSWGQYLGTLR
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mRNA from alignment at CM002455.1:1499296..1500743-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna600 ID=rna600|Name=rna600|organism=Nannochloropsis gaditana|type=mRNA|length=1448bp|location=Sequence derived from alignment at CM002455.1:1499296..1500743- (Nannochloropsis gaditana)
GAATCACAACTCTTTGTCATTTTCGGGCCACTTTTGACGCACACTGTACA
TTCATAGGCTCTTACACATACACAGCCATGAAAACCACGTTTGCCGTATG
ACAAGGCTCGTACATGTCCATTTGTTTTCCGAGGGACGACAGGCTACTTA
TGTCCTGTGTTCCTCGATGCCCTACTACCGTAGCCTCCTTCCCCCTCTTC
GACTTGATTATGTCACCTCCAGTACTCATATGGCAAGCGCTGGCACCGCT
CAACTCAGTTTCAGTGCTTTCTTGAGTGCTGCTGTCAGGACAACATTTTG
GTTGGACATCACACTTTCATTTTTGCCCCCCAGCTCTTGGCTGATCCTGG
AGTGTGCCTGCAAACTTATATTTAGTCACATTAAACATGCCAACGCGTGG
AGATGCGTCGACCTCGGTCCCATTTATCTCCACTCTTTACCCTCGTGCCT
AACGCCGGCAGACATCGTGCAAAACATACGATTTGAGTTCATTGAGCGGA
AAGCAAGTCTCTGGCGTTTGCGGAGGGCATGGGCCACTATTGAGCAATTC
GCCCCAGCAGGATTCTCCTGGACACTGAACAAAGGAATAGAGGAAGACGC
GTTGGGACGTTGGGAGTACGCTTTGGGGTGCAGTCTTCCTCCCGATCTGC
GGGCTTCGTTCCTCATACATGATGGACAGAGCTACATGGCGCAGCCTGGT
ATGATGCTTGGAGGGGGAAGGCTCCTCTCGTTGGAAGATGTTGTCATCCA
AGCGTGTCGCATGGAGCAATCTCAAAGCGACCAAGACAGGCGCTGCATGA
TAGAAGTGGCCGAAGGAGCTGATGTCCAGTCGGCAAAGACTGGAAAGGGC
GGGGAAGATGAAGGAGATAGGAATGAAGGGGAAGAGGGCTGGCGGATGGT
ACCCCTGTCGGAGGGGGCCCGCGGCCGTTCAGTGTGCATTGCTTTGCCAA
AGCGGTGGAAGAAGAAAAGAGTGAGAGGGAGACGTAAGGAAAGAGAGACT
GCTGAAGATGAAGGATTATTAGGAGGTGTGTACATTGTAACCGCGTTATC
GTGTCGAAAGCTTGCTGATAGCTGGGGCCAGTATTTGGGGACGTTGCGCT
GAGTCGATGTAAGATAGCGTGAAATATTGTGCAGAGGGATTCGTAAATCG
GAAAAATCACATATTGATAGAACAGCCGCGCTCGAGAACGAACACTTTTT
CCTGTTCGCAGGCTCTGGCTTGGATCAATATATATTCAGTAGACTGATTT
AAATATTCCACGACTTCTTGATGCGTATAGCCCATTTTTAATAGCTTGAG
GATAAAATCATTTCCTCATAGGTTCTTTCGTTGCAGACGGTTTTAGACAT
GGATTAATCTTATTCGGTCAGGTCATTGCTCTATGGACAATACCATTTTT
CTACTTTAAAGCTCTTATTTGAGAAGAAGGAAATAATCTGCGTGAAAT
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Coding sequence (CDS) from alignment at CM002455.1:1499296..1500743-

>rna600 ID=rna600|Name=rna600|organism=Nannochloropsis gaditana|type=CDS|length=1005bp|location=Sequence derived from alignment at CM002455.1:1499296..1500743- (Nannochloropsis gaditana)
ATGACAAGGCTCGTACATGTCCATTTGTTTTCCGAGGGACGACAGGCTAC
TTATGTCCTGTGTTCCTCGATGCCCTACTACCGTAGCCTCCTTCCCCCTC
TTCGACTTGATTATGTCACCTCCAGTACTCATATGGCAAGCGCTGGCACC
GCTCAACTCAGTTTCAGTGCTTTCTTGAGTGCTGCTGTCAGGACAACATT
TTGGTTGGACATCACACTTTCATTTTTGCCCCCCAGCTCTTGGCTGATCC
TGGAGTGTGCCTGCAAACTTATATTTAGTCACATTAAACATGCCAACGCG
TGGAGATGCGTCGACCTCGGTCCCATTTATCTCCACTCTTTACCCTCGTG
CCTAACGCCGGCAGACATCGTGCAAAACATACGATTTGAGTTCATTGAGC
GGAAAGCAAGTCTCTGGCGTTTGCGGAGGGCATGGGCCACTATTGAGCAA
TTCGCCCCAGCAGGATTCTCCTGGACACTGAACAAAGGAATAGAGGAAGA
CGCGTTGGGACGTTGGGAGTACGCTTTGGGGTGCAGTCTTCCTCCCGATC
TGCGGGCTTCGTTCCTCATACATGATGGACAGAGCTACATGGCGCAGCCT
GGTATGATGCTTGGAGGGGGAAGGCTCCTCTCGTTGGAAGATGTTGTCAT
CCAAGCGTGTCGCATGGAGCAATCTCAAAGCGACCAAGACAGGCGCTGCA
TGATAGAAGTGGCCGAAGGAGCTGATGTCCAGTCGGCAAAGACTGGAAAG
GGCGGGGAAGATGAAGGAGATAGGAATGAAGGGGAAGAGGGCTGGCGGAT
GGTACCCCTGTCGGAGGGGGCCCGCGGCCGTTCAGTGTGCATTGCTTTGC
CAAAGCGGTGGAAGAAGAAAAGAGTGAGAGGGAGACGTAAGGAAAGAGAG
ACTGCTGAAGATGAAGGATTATTAGGAGGTGTGTACATTGTAACCGCGTT
ATCGTGTCGAAAGCTTGCTGATAGCTGGGGCCAGTATTTGGGGACGTTGC
GCTGA
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Synonyms
Publications