rna60, rna60 (mRNA) Nannochloropsis gaditana

Overview
Namerna60
Unique Namerna60
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1213
Alignment locationCM002455.1:174655..176050 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100129g4.1890.mrna
Orig protein idgnl|cribi|Naga_100129g4.1890
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:174655..176050 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100129g4gene59Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30612.1cds60Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna60rna60-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna60 ID=rna60|Name=rna60|organism=Nannochloropsis gaditana|type=mRNA|length=1213bp
GCACGCGCGGCCGTCATACCGTTGTAGGATAATGCGACTCTCTGGCCTCC
ACATTGGATATTTCTGTGCAGTATCGGCCGTACAACTTGGCTCGATAGCC
CTGGCGGAGGGTGCTGGGTCAGATGAATGGTTTATTAAGCCTATTCGCGG
TCGGTCAACCTACTATGGCAACTACGGAGGGGGGGGCGCATGCGGTTTAG
ACCAGCCCGATGGCTCGGCAATTCCCGCCGAGATTCAGGGCATCGACTTT
ACAGTTGCCTTGGATCAGCCTCAGTTTGACGTGGGAGGATGCGGGATGTG
CATTTTGCTGAACGGCACAGGTGTTGGTGCAGGTGGGAACCCTGTCAATG
GTATTTATACAGCGTTTGTGAACAATCTGTGTCCCGAGTGTGAGTATGGT
CATCTGGACTTTGCGCTTCCTGGAGATGGTAGCTGGGAGATTGAGTGGAA
AGCCATTCCCTGCGATGTGAGGGACCATAAAATACGATTTGTTTTCATGG
GCTCGAATGACTTCTATTTAAAAGTGTCGACCCAAGCGTCGCGCTTTCCC
ACCAAAGCCCTGCGATTGAAAATGGGAGGGGAGTGGAGGGAGGGTTGGCC
CGTACACGGGTCCTACTTTGAGTTTCGGGACGGAGCTCCCTTTACATTTC
CGATGGAAGTAGAAATTACGTCCGTTTTTGGAGAGGTTTTGACTGATTGG
ATCGAGTCCCTGCAGGGGGGGCCTAGCACCATCCAATACACGCTGCAAGC
CGAAGAGCTGACATCAGAAATGACCAGGGGTGCCACCTGGGAGGGAGAGT
CGGGCCTCGACGACGACCTCGAAGGATCATCCACTACCCCAGACGAGAAC
CTCATGACGAAGGAAAGGATTGGGGAGGGTTTGGTGCCACGGAAGCTTAA
AGAGTCGCGGAGGGATGTGGGAGGGGAGCCGACGCGGAGAGGAGCGAGAG
AGGCGAATGAAAGTGATGCGTCAAACAAGCAATCTACATCACAGATTGGG
ACAGCCAATTTGGTGTCTTCCCAATCACGTCTACGTGGGATCAAAGCGAG
CAACGAGCATCAATAATTAACAGAGGTATATATGCATATATAAGAGCAAG
AATGGATTTCAGCTCGAATAAGTAGGGGTGCTTTCTAGCTGTCTTCGAGT
GATTTTTGGTCAAAGGGTAAAATATGACACCACATGATGCAACCAAGACA
CACTACATGACTC
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protein sequence of rna60

>rna60-protein ID=rna60-protein|Name=rna60|organism=Nannochloropsis gaditana|type=polypeptide|length=215bp
MDEGREGGREGGGEGGGEGGSERDPSTPARGNHAPFGFTLSAQLARQPST
RLRIRQGSLLGSSPSGRTATCLTTLALPAAGNSGEIGAPVSARTTDPTAI
VSFFLPGVRPKWKRFLEEGLGKVQFIRYLIKLRRRRGCDVRWRVWGIKTL
ILKVILFRPGQAAAAASVHALGRGIGNGWLTTRDLGVLPACTRHSTWEGF
NVKTKSASKGAEPSG
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mRNA from alignment at CM002455.1:174655..176050-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna60 ID=rna60|Name=rna60|organism=Nannochloropsis gaditana|type=mRNA|length=1396bp|location=Sequence derived from alignment at CM002455.1:174655..176050- (Nannochloropsis gaditana)
GGCCGGAGAGGAATAAGAGTTAGGGAAGGATGGACGAAGGTAGGGAGGGA
GGGAGGGAGGGAGGGGGGGAGGGAGGGGGGGAGGGAGGGAGTGAACGCGA
TCCGTCCACACCAGCGCGCGGAAACCACGCACCATTTGGTTTTACTCTCT
CGGCACAACTGGCACGTCAACCATCGACTCGTCTGCGGATTCGACAGGGT
TCGCTTCTTGGCAGCTCGCCCTCCGGCCGTACTGCTACTTGTCTCACTAC
ACTGGCTCTGCCCGCCGCGGGCAACTCGGGGGAGATCGGGGCCCCTGTCA
GTGCTCGCACCACTGATCCAACTGCGATCGTCTCCTTCTTCCTGCCCGGG
GTCCGTCCAAAGTGGAAAAGGTTCTTGGAGGAAGGGCTGGGCAAGGTCCA
ATTCATTCGGTACCTCATAAAGCTGCGGCGGCGAAGGGGGTGCGACGTAC
GGTGGCGGGTGTGGGGGATAAAGACCTTGATTCTCAAGGTTATTCTCTTC
AGACCCGGTCAGGCCGCCGCAGCAGCCTCCGTGCATGCTCTTGGAAGAGG
AATAGGGAACGGTTGGTTGACCACCCGCGATTTGGGCGTATTACCGGCGT
GTACGCGACACAGCACTTGGGAGGGCTTTAACGTGAAGACGAAAAGCGCA
TCAAAAGGCGCTGAGCCCAGTGGGTAATGGCCAGGCATTACCCATCCTGT
GCATCTGTATCAAGAATAGAAAGTGACCGGGTCAATGTCCGAGTCTTGTC
GTAGTCTCTGTGCGTGCGGTAAAGTGCTTGCCGCAAGCTCACTAATATCA
GCCTCGCAATAACCGCGCATCTCCCTCTCTTGCTCAGGAAATAAAACAAC
AAATCACCACGCCCGTGTCCCGCCACCGGGGGACAGCGTCACATCCCATG
CGTTTCAACGCCCCATAAAAGAGGCGTGTTGGTGTGTGTTGGTACGTCGT
GGGTCCCGCCTTGTTGCTGTCTACATGCAACTCATGAGAGAAGACAGGTG
CGCGTGACCCTCCACCCAGAAGTGGCACGTACATAATCCACGTTTGCGTG
CGGGACAAGGTGGTCCGAGGCCTTGCGACCGTGTCGCTCATGCTCCGAAC
ACGATGACAAGCTTAGCAGAGCTACGATTGAGTCGATGTTTGATTGACGT
CGGTCCGTGGTTTTTGGCATTGACCTTCCCTCCACCTTGAAAGCTCAGCT
ACAAGCGTAACCCCCAGCCACTGCCACCCTCCGCTTTAACCATCACCCAT
GAACATTGCCACAGACTGAGACATTTAGTACTCCGTAACATTAAAGTATA
GTTTCCAAGTACCAGCATTTGTCGGTCCCCCCCGAAAAATGGAAAAAAAA
ATAATCGACAAAGACAGAAAAGTGATGTTTTAAAGTCCATTACAGG
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Coding sequence (CDS) from alignment at CM002455.1:174655..176050-

>rna60 ID=rna60|Name=rna60|organism=Nannochloropsis gaditana|type=CDS|length=648bp|location=Sequence derived from alignment at CM002455.1:174655..176050- (Nannochloropsis gaditana)
ATGGACGAAGGTAGGGAGGGAGGGAGGGAGGGAGGGGGGGAGGGAGGGGG
GGAGGGAGGGAGTGAACGCGATCCGTCCACACCAGCGCGCGGAAACCACG
CACCATTTGGTTTTACTCTCTCGGCACAACTGGCACGTCAACCATCGACT
CGTCTGCGGATTCGACAGGGTTCGCTTCTTGGCAGCTCGCCCTCCGGCCG
TACTGCTACTTGTCTCACTACACTGGCTCTGCCCGCCGCGGGCAACTCGG
GGGAGATCGGGGCCCCTGTCAGTGCTCGCACCACTGATCCAACTGCGATC
GTCTCCTTCTTCCTGCCCGGGGTCCGTCCAAAGTGGAAAAGGTTCTTGGA
GGAAGGGCTGGGCAAGGTCCAATTCATTCGGTACCTCATAAAGCTGCGGC
GGCGAAGGGGGTGCGACGTACGGTGGCGGGTGTGGGGGATAAAGACCTTG
ATTCTCAAGGTTATTCTCTTCAGACCCGGTCAGGCCGCCGCAGCAGCCTC
CGTGCATGCTCTTGGAAGAGGAATAGGGAACGGTTGGTTGACCACCCGCG
ATTTGGGCGTATTACCGGCGTGTACGCGACACAGCACTTGGGAGGGCTTT
AACGTGAAGACGAAAAGCGCATCAAAAGGCGCTGAGCCCAGTGGGTAA
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Synonyms
Publications