rna5995, rna5995 (mRNA) Nannochloropsis gaditana

Overview
Namerna5995
Unique Namerna5995
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1432
Alignment locationCM002467.1:313230..314719 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100076g2.8807.mrna
Orig protein idgnl|cribi|Naga_100076g2.8807
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:313230..314719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100076g2gene5792Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24699.1cds5980Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5995rna5995-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5995 ID=rna5995|Name=rna5995|organism=Nannochloropsis gaditana|type=mRNA|length=1432bp
CACAGAGCACCGTGTGCTTGTCCTCCCTTACTTCTTGTCCACTGTCCCGG
GGGCTTGCCCCCCGGTTCAAGGCGTTCGGAATGGTTTCGTGCGGAGCGCG
GGCGGGCGCCAGGACGCGTTGGTCTGATGGCCAGGGCATATTCTTTCGCG
TGTCTTCGGGTGGCGAGGCCTCGACGCTGTCGAGGAGGGCTTTCGGTGCG
GTGCCTTGTGCCTTTGCCTGCGATCAAGGGATCCACTTGGCAGTGCAAAG
CTTAAACCGAGTGACGTGATCGTACAGCCTGGAAGAGCCTGGTTTTGTGC
ACCCTGGGGGCGCAGGGAAAGGGAAGGCTGGGAGTGACAGAGCATGGGGC
CGCTCTCGTGGAAGACGCCTATACACTTATGCCATCAGATGGCATTCATG
GCCCAACTGCAGGCCACGTGCATTCGTGTACATGCCATTCTACGAAATTT
GTCGAGCTATGGTTTCAAATTCACTGGTACTCATTTTCTGCCGATGCACT
ATCCGCCTTCAACCACAAGCAGACCTCACCTCTCTCACACCATGAAGTCC
ATCATCGCCCTCCTTTTGGCCGCTCCGGCCCTGGCTTTCATGCCTCCTAC
TCCTGCTCCCCAGCGCACCGAAGTCATCATGAGCGCATCCCGGGACTGGA
AGAAAGACTTGGCCAAGGCCGCATTCGTGGTCATGCCCATGGTTGCCCCT
CTCGTGGCAGGCGCCAAGATCGACTACGAGGGCGTGGGCTACCTGGGCGG
GTCCGAGAAGATCGACGTGAACAACGCCAATGTCCGTGTCTACTCCCGCT
TCCCCGGCATGTACCCCACCGTGGCGGGGAAGATCGTCTCCCACGGGCCC
TACAAGTCCGTGGCGGACCTGTACTCGATCAGCGGGTTGACTGAGCAGGA
GAAGAGCATCTTGAAGAAGTACGAGAGCAAGTTCATCACCCTTGAGCCCG
CGCCCGAGTACACGATCGACCGCATCAACAACGGCCTATACCGTTAGAGG
CTCTACATGTGGCTTGGGCGGGGGGGGTCCCCGCTGTCCGGCCTCTCATC
CCTGCGGGTGCTCGGTGCTTCGAGTCCCCCATCTCTCGTCCACGTGTCGC
ACGGTCCTGGTCCGTGGTTGCTGGTGATCCATACGGGAAAAACATGGCGG
AAGGGGAGGGAGGGGGAAAGGGCCTCTGAACGAGGAGGGTGGGGGGCGGG
CAGGCGGGGGCTTGGAGGAGGAACGTGACTGAACGCGAAGGAGCGAGACG
AGGCGCCCGGTGCTAGGACTTCTTTCTGTGTGCTTGGCCTGGCGGGAGAA
GAAAGAGCGCACAGAAGGATGAACGCGTGGGGTATTAAGCAAGAAAAGAG
AAATCGAGTCGACAGGAAACACACCGCCGTGTCTGTTCATGAGCCTGTGC
GAACATTTGTCTTCGCCCAGGATGTTTTTTGC
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protein sequence of rna5995

>rna5995-protein ID=rna5995-protein|Name=rna5995|organism=Nannochloropsis gaditana|type=polypeptide|length=398bp
MLARLFKRRHRGSPASSLASDDHPSMNEPDLDVSRTSRRYTGSHDKEGAS
AIEKETFAAQAEIASTEKFLLERQGARMRDELARKKFTVASLSTQVQELT
DEVRRWEKETKCKDTMLEGCAQRLHEQEVALSRARREKTETDEMLEATAE
SLRETRARLEQLEGRGLWEPVGKAMDGGLVGEARGAPTATGEVPSKRTGM
ARIYALSLACVAILAMGVFAGASLDVVSLEGITPLGTTCRRSALLVLRPG
GPSLAMREYISSCRTSQWLTTSGGTETSLGGCQNRHFLWLQGDGNLILYR
GTSPSRHAGPVWATQRIEGKRALGLEGESLGNARGKKGRRDGGRQEERPR
YSYRAFVDGKKRLKVVRRLEGSADEKTVFSMAAKRLPKVLFPWPFLKD
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mRNA from alignment at CM002467.1:313230..314719-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5995 ID=rna5995|Name=rna5995|organism=Nannochloropsis gaditana|type=mRNA|length=1490bp|location=Sequence derived from alignment at CM002467.1:313230..314719- (Nannochloropsis gaditana)
CAGGGTCTGGCACCTTTCGAGGGAGTTATCAATTAGAAATTGTCCCTTCC
GTCAAGGATGCTGGCACGCCTGTTCAAACGTCGCCACCGCGGAAGTCCCG
CTTCTAGCCTCGCGTCGGACGATCACCCATCAATGAATGAGCCGGACCTC
GATGTTTCCAGGACATCTAGAAGGTACACGGGCAGTCACGACAAGGAAGG
GGCCTCGGCCATTGAGAAGGAAACGTTTGCAGCGCAAGCCGAGATAGCAT
CAACAGAAAAATTCCTCCTTGAACGTCAGGGGGCGCGCATGCGCGACGAA
TTGGCGAGAAAGAAGTTCACAGTGGCCAGCCTATCCACACAGGTGCAGGA
ACTTACAGATGAAGTTAGGCGCTGGGAGAAGGAGACTAAATGTAAGGACA
CGATGTTGGAGGGGTGCGCGCAACGTCTGCATGAGCAGGAGGTAGCCCTC
TCGCGCGCCAGGCGGGAGAAGACAGAGACGGACGAGATGCTGGAGGCGAC
CGCCGAGAGCCTTCGGGAGACGCGGGCGCGACTGGAGCAACTAGAAGGAA
GGGGGCTGTGGGAGCCTGTCGGGAAAGCCATGGACGGGGGTCTTGTGGGC
GAGGCGAGGGGCGCGCCGACTGCCACAGGAGAGGTCCCAAGTAAGCGCAC
GGGCATGGCCCGAATATATGCCTTGTCTCTCGCGTGCGTCGCAATCTTGG
CGATGGGTGTTTTTGCGGGAGCCTCGCTCGATGTCGTGTCCCTGGAAGGC
ATCACACCTCTCGGGACGACCTGTCGAAGAAGCGCTCTTCTTGTCCTTCG
GCCCGGGGGACCCTCCCTCGCCATGCGGGAGTATATCAGCAGCTGCCGAA
CCTCGCAGTGGCTCACGACCAGTGGCGGTACGGAGACGAGCCTGGGTGGC
TGCCAGAATCGCCATTTCCTGTGGCTGCAGGGTGACGGCAACCTCATCCT
GTACAGAGGAACATCGCCGAGTCGGCACGCGGGACCCGTGTGGGCCACTC
AGCGAATAGAGGGGAAGCGTGCGCTGGGCTTGGAGGGAGAGTCGCTGGGA
AATGCCCGGGGGAAAAAAGGTCGTCGCGACGGGGGGAGGCAAGAGGAAAG
GCCGAGATATTCGTATCGCGCCTTTGTGGACGGAAAAAAGCGGCTCAAGG
TTGTGAGGCGCCTGGAGGGAAGTGCTGATGAGAAAACTGTTTTCAGCATG
GCCGCCAAAAGGCTGCCCAAGGTGTTGTTCCCTTGGCCTTTTCTGAAGGA
TTGAGGGGGAGCCTGTGTGAACGAAGTCGAATAGGCGCAGAGCCACATCA
GCAACGCATGTAGATAGACCGATATCCCACAGTTGCGGTACGCATAACAG
AGCACCACATTGTCTCAAAAGAAAGCTTCAAGATGAAAAGATTACGGTGG
ACATCCCGTCACGGTACTCAGTTTGTACTCATTCCGGAAATTACACGCTG
GAAGGAAAGTAAATGCATACTGCACACGACACGTTTGGCA
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Coding sequence (CDS) from alignment at CM002467.1:313230..314719-

>rna5995 ID=rna5995|Name=rna5995|organism=Nannochloropsis gaditana|type=CDS|length=1197bp|location=Sequence derived from alignment at CM002467.1:313230..314719- (Nannochloropsis gaditana)
ATGCTGGCACGCCTGTTCAAACGTCGCCACCGCGGAAGTCCCGCTTCTAG
CCTCGCGTCGGACGATCACCCATCAATGAATGAGCCGGACCTCGATGTTT
CCAGGACATCTAGAAGGTACACGGGCAGTCACGACAAGGAAGGGGCCTCG
GCCATTGAGAAGGAAACGTTTGCAGCGCAAGCCGAGATAGCATCAACAGA
AAAATTCCTCCTTGAACGTCAGGGGGCGCGCATGCGCGACGAATTGGCGA
GAAAGAAGTTCACAGTGGCCAGCCTATCCACACAGGTGCAGGAACTTACA
GATGAAGTTAGGCGCTGGGAGAAGGAGACTAAATGTAAGGACACGATGTT
GGAGGGGTGCGCGCAACGTCTGCATGAGCAGGAGGTAGCCCTCTCGCGCG
CCAGGCGGGAGAAGACAGAGACGGACGAGATGCTGGAGGCGACCGCCGAG
AGCCTTCGGGAGACGCGGGCGCGACTGGAGCAACTAGAAGGAAGGGGGCT
GTGGGAGCCTGTCGGGAAAGCCATGGACGGGGGTCTTGTGGGCGAGGCGA
GGGGCGCGCCGACTGCCACAGGAGAGGTCCCAAGTAAGCGCACGGGCATG
GCCCGAATATATGCCTTGTCTCTCGCGTGCGTCGCAATCTTGGCGATGGG
TGTTTTTGCGGGAGCCTCGCTCGATGTCGTGTCCCTGGAAGGCATCACAC
CTCTCGGGACGACCTGTCGAAGAAGCGCTCTTCTTGTCCTTCGGCCCGGG
GGACCCTCCCTCGCCATGCGGGAGTATATCAGCAGCTGCCGAACCTCGCA
GTGGCTCACGACCAGTGGCGGTACGGAGACGAGCCTGGGTGGCTGCCAGA
ATCGCCATTTCCTGTGGCTGCAGGGTGACGGCAACCTCATCCTGTACAGA
GGAACATCGCCGAGTCGGCACGCGGGACCCGTGTGGGCCACTCAGCGAAT
AGAGGGGAAGCGTGCGCTGGGCTTGGAGGGAGAGTCGCTGGGAAATGCCC
GGGGGAAAAAAGGTCGTCGCGACGGGGGGAGGCAAGAGGAAAGGCCGAGA
TATTCGTATCGCGCCTTTGTGGACGGAAAAAAGCGGCTCAAGGTTGTGAG
GCGCCTGGAGGGAAGTGCTGATGAGAAAACTGTTTTCAGCATGGCCGCCA
AAAGGCTGCCCAAGGTGTTGTTCCCTTGGCCTTTTCTGAAGGATTGA
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Synonyms
Publications