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Properties
| Property Name | Value |
|---|
| Product | elongation factor ef-3 |
| Orig transcript id | gnl|cribi|Naga_100076g10.8804.mrna |
| Orig protein id | gnl|cribi|Naga_100076g10.8804 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002467.1 | supercontig | CM002467.1:298524..300172 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5988 ID=rna5988|Name=rna5988|organism=Nannochloropsis gaditana|type=mRNA|length=2782bp
GGATGTTAAAAGTAATTGTAAGGGGCTTTTGCCGGGGTTGCGAAAACTTA
AAAGGACATAGAATGCAGAGCTTTCCCACTCAAGTGCTGCGTCTCGATCC
CACCCTTCCTCATCTATACATCCATACGTCACTCAAAATAACGCTCTTAA
ACCAACGTCAGGAGGGACTTCGGCAGATTATTTGGGCGCTTTCAGTCGGA
TAGACAGAGGTGTACCACAATTTTCGGCGCATCTCGTCTCCTTTCCCCCG
TCCCCTCTGTTGGAGAATTGAGCCTGAGCCCCAGCCTTGTGACGCCCTGA
GACCACGCCTGCCCGGATTCGATTCTTACATTATTTTTACCGGAAAACCC
GCCATCTAGAAGCTGGTGTATTTGCATGGCATTAAACCCCACGGGCGACA
ACGGCTTCAGCCTTCAAGATGCCCACTTTGAGGTAGACAAGCTCGACACA
CAGCTTCATCCTTCCCATCGTCCCCACCATCAAGGCGGCTATGCGCAACC
GTCGCCAGCAGGCATTGCCGTGGGAGAATCGGAGGCATTTGCCACTGGTA
CAGGATGGCCGGCCTCACCAATACCAGGGGTTCCGCCGGTACGCACACGG
GAGGAGTACAGTGTCCGCTACAAAGAGCGAGTGCACCGCCTCGAGGCCAA
CGCCTCCCTTTGGGACTACTTGCTCTTCGTGCCCCACGCTATGTACATGT
TCATGAACCGGTTGTGCGACGCATTCGGTTTCAAATTCATCGGCCTCCTG
ATGTGCGTGTACGGGCTCTCGCAGGGTCTAGGCGAGAACTACATGTCCAT
GTCCACAGACTACTACTTGAAGGACGTCTTGAAGCTCGAACCCGCCTCGG
CCCAGGCATTTAAAAGCCTCACGCACCTGCCCTGGAACATCAAGCCCATC
TACGGCCTGATGAGCGACACATTGCCCATCATGGGCTTCAAGCGCAGCCC
CTACATCATTTTGGCGGGCGGTCTGGGCGTCACCGCCTGGCTGACCCTCG
CGCTCCTGCGACGACCGTCCTTTAACCTCTCCGCCTTCCTCATCCTCCTC
GCCAACTACAGCATCGCCTCCCCCGACGTGATCATCGACGCTGCTATCAC
CGAGCGGTCGCAGCTCGCGCCCATGTATGCCTCCGACCTCCAGTCCCTCT
CCTGGGGCAGCCATTCTCTGGGCGGGATCCTCGGCTGCTCCACCGTCGGC
CAAGCACAAGCGCACTTGCACTCCCGCGGCGTCTTCGCCCTGACCTCTCT
CACCTCCCTCTCCATCCTGATCCTGGCCTCCTTGCGCTGGCTCCCGGAGA
AGCAAATCCCTCGGGGCCCCGAGCGTTCCAACGCCTGCCGCCTGGCCTGG
CATAAAGGGGGGCAACGCTCCCTTTACCTCCTCGCCTTTTTCGTGGCCCT
GTGCGCCGTATTTCTCGCCACCACGATCAACCACATCGAAAATCGGCTGA
CCGGGGGCTACATCACCATCGCCGTCGCCGTCATTGTCACCGCCGTCGTC
TACACCACCCTCGGGCGAATATCCCCGAAAATTGCCCGACCTGCCATATA
TTTCTTTCTGCGCGAGGCCCTGCAACCCAACATCGCAGAGGCCATGTTCT
ACTGGTACACGTCGGCGGAGGGCGGCCCTGGCTTTAAACCCCAGTTCTTA
GGGATTTTGAACTGCATCGCCAGCGTCTCCATGATTGTGGGCATCTCCCT
CTACAACAGGTATATGTCCACCTGGAAGTACCGCACCATATTCATCGCCT
CGCAATTCTTGATGGTGGGCGCCGGCATGCTGGACTGGGTCCTGGTCAAA
CGCTTGAACCTCCGGGTAGGAATCAGCGACAAGGCCTTCGTGCTCGGGGA
CGAGGCCCTGGTCCCTCTATTGCGCCGCTTCGCCGCCATTCCCTTCTTCG
TCCTTGCGGCCAAGGTCTGCCCGGCGCGCTGCGAAGCCACCCTCTTCGCC
CTGCTCATGGCCCTGAGCAATTTTGGGGGCGACGTGGGGAGCTACATGGG
CGTGGGATTGCTCAAAGCCTTCAGCGTCTCACGCGCGGACTACTCCCGGC
TCCCGCAGGTGGTGTTGGTGAAGACCTTCTGCCGGTTCATCCCCGTCATG
CTGATCCCTTTCCTCATCCCCGACGCGAGCCCGGCCGATGAGATCTTGAC
CGAGAAAGAGAAGCTCCTCAAGGAAGGGGAGGATGAAGAGGGCGACGGGG
AGGACGGCGGGGAAATGGAGGGCGTGGAGATGGGCCGCGTGGTCATGGAG
GAAGAGTCCAGTCCTGCGCGGCGGCGGCAGAAAGGCTCCAGTGGGAGTGA
ACGCGGGCTGATGGGACAAAGGCTGGAGGGAGGGAGGGAGGGAGGGGTCG
GGGGGGGAGAGGTGCGGCCGGAGCTTGGTCATCTCGGCACGCCACTGGCC
ATGGCGGGCGGCGAGAAAGATTCCTTGTAGGGGTAGCGGGGTTTTGAATA
GGGGCAGGGGCGCTCCAAAGTTCAGTCCGCCGATCGTTGGATGTGACGTT
GTGCCCTGCTCTCTCTCGTATGAGGGAACAATGGGTTGATTAGAAGGGGT
GCGGAGGGGTGCGGAGGGGAGGGGAAGGGGGTGCACAGATGAGAAAGTCG
TGCATGGCTATTGTCTCAGGATGCGGTCACTCCATAGTGGACGGGCGGCG
CGTAAGTAAATAATTATGGTTAGATGGGGACGAGATGCAAATCATCCGAT
GGAAATGAATTGAATTTACCCAAAGCCTGGAAGGAAATAAACTGACAAAG
AATCATGTACGGTTGTAGATGGCCTTCCCCTC back to topprotein sequence of rna5988 >rna5988-protein ID=rna5988-protein|Name=rna5988|organism=Nannochloropsis gaditana|type=polypeptide|length=437bp
MKGNLNDFVAKFPEKKSYFVLTNEKVRFVFPEPGPLEGVKSLSKHILKMT
GVTFQYPTRDKPTVMDICLEVSRVSRVAVIGPNGAGKSTAIKLLIGELTP
SQGSITKHPNMRLAYVAQHAFFHLEKHLNETPAQYIMWRFAGNEDKESLD
LLNKKKEVDKEVTKYFIREGTTLCQCYSPAEEKLAVEPEAIINRHEDKKA
KTKEYEVKWRGKSTDCNLWVRRDVLLSMGAEKMVQKFDEKMAAEAGLQFK
PLTTSAIEKHLADFGIDPEDASHTLIKSLSGGQKIKVVMAACFWQNPHII
VLDEPTNYLDRDSLGALVQAIHDYKGGVIIISHNREFAGAVCQEKWIMDK
GRLRREGESVALHEEEEKKEELGDKVVIDALGNEIKVNKQTTLSDKEKKK
EIKRLQKMITDGRKKKTLNEDTILDLELKLEELKAAP back to topmRNA from alignment at CM002467.1:298524..300172- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5988 ID=rna5988|Name=rna5988|organism=Nannochloropsis gaditana|type=mRNA|length=1649bp|location=Sequence derived from alignment at CM002467.1:298524..300172- (Nannochloropsis gaditana)
ATGAAGGGCAATCTGAACGACTTCGTGGCCAAGTTCCCGGAGAAGAAGAG
CTACTTCGTCCTCACCAACGAGAAGGTCCGCTTCGTCTTCCCCGAGCCCG
GGCCCCTGGAAGGTGTCAAGTCCCTCTCGAAGCACATCCTCAAGATGACG
GGCGTGACCTTCCAGTACCCGACGCGCGACAAGCCGACGGTCATGGACAT
CTGCCTGGAGGTCTCTCGCGTCTCCCGCGTGGCCGTGATCGGGCCCAACG
GGGCGGGCAAGTCTACGGCCATCAAGCTCTTGATCGGAGAGTGAGTAGGG
GGGGGCAAGACGGGCGGGTGCGAGGGCGGGCAGGTTCAACGAAGGGGGCT
GGTGTGCCGGATAATTTTTTCCATTGTCGTATGGGGGGAAGAGGAGAGAG
GGAGGGCATCAGACCGCGTCCTCCCTGTCTTGCTAGTCGCTCATGTTCCC
TGTCAACCCCCCCCCTTTTCGCACACAGGCTCACGCCTTCGCAAGGGAGT
ATCACCAAGCACCCGAACATGCGCCTGGCCTACGTGGCCCAGCACGCCTT
CTTCCACCTGGAGAAGCACTTGAACGAGACGCCCGCCCAGTACATCATGT
GGCGGTTCGCGGGGAACGAGGACAAGGAGTCCCTGGACCTCCTGAACAAG
AAGAAGGAGGTGGACAAGGAGGTGACCAAGTACTTCATCCGGGAAGGGAC
GACGCTCTGCCAGTGCTACTCCCCCGCGGAGGAGAAGCTGGCGGTGGAGC
CTGAGGCGATCATCAACCGGCACGAGGACAAGAAGGCCAAGACGAAGGAG
TACGAGGTGAAGTGGCGAGGCAAGTCCACCGACTGCAACCTGTGGGTCAG
GCGAGACGTGCTCCTGTCCATGGGCGCCGAGAAAATGGTGCAGAAATTCG
ACGAGAAGATGGCGGCGGAGGCGGGGCTCCAGTTCAAGCCCCTGACCACT
TCCGCGATCGAGAAGCATTTGGCCGACTTTGGGATCGATCCGGAGGATGC
CTCCCACACCCTGATCAAGTCCCTCTCGGGGGGGCAGAAGATCAAGGTGG
TGATGGCCGCGTGCTTCTGGCAGAACCCGCACATCATCGTCCTGGACGAG
CCCACCAACTACCTGGACCGGGACTCCCTCGGCGCCTTGGTGCAGGCCAT
CCACGACTACAAGGGCGGTGTCATCATCATCTCCCACAACCGAGAGTTCG
CGGGGGCGGTCTGCCAAGAGAAGTGGATCATGGACAAGGGCCGCTTGCGT
CGGGAGGGGGAGTCGGTAGCCTTGCACGAGGAGGAGGAGAAAAAGGAGGA
GCTTGGGGACAAGGTGGTGATCGACGCTCTGGGCAACGAGATCAAGGTGA
GTCTCCTTGTTTTCTGGGCCCGGCGGCTCTGTGATCCTTCACACGGCATA
TTCCTGGGTCGTCCAAGTCCCTGCGGTGTCCGTCTGCAAACTTTCGCCTC
ACAATATCCCCTCCTCCCGCCTAACCCACTCTGCTCGATACAGGTGAACA
AGCAAACGACCCTGTCCGACAAGGAAAAGAAGAAGGAAATCAAGCGGCTG
CAAAAAATGATAACCGACGGGCGGAAAAAGAAGACTCTGAATGAAGATAC
GATCCTGGACCTAGAGCTGAAGCTGGAGGAGCTGAAGGCCGCCCCTTGA back to topCoding sequence (CDS) from alignment at CM002467.1:298524..300172- >rna5988 ID=rna5988|Name=rna5988|organism=Nannochloropsis gaditana|type=CDS|length=3942bp|location=Sequence derived from alignment at CM002467.1:298524..300172- (Nannochloropsis gaditana)
GTGAACAAGCAAACGACCCTGTCCGACAAGGAAAAGAAGAAGGAAATCAA
GCGGCTGCAAAAAATGATAACCGACGGGCGGAAAAAGAAGACTCTGAATG
AAGATACGATCCTGGACCTAGAGCTGAAGCTGGAGGAGCTGAAGGCCGCC
CCTTGAGCTCACGCCTTCGCAAGGGAGTATCACCAAGCACCCGAACATGC
GCCTGGCCTACGTGGCCCAGCACGCCTTCTTCCACCTGGAGAAGCACTTG
AACGAGACGCCCGCCCAGTACATCATGTGGCGGTTCGCGGGGAACGAGGA
CAAGGAGTCCCTGGACCTCCTGAACAAGAAGAAGGAGGTGGACAAGGAGG
TGACCAAGTACTTCATCCGGGAAGGGACGACGCTCTGCCAGTGCTACTCC
CCCGCGGAGGAGAAGCTGGCGGTGGAGCCTGAGGCGATCATCAACCGGCA
CGAGGACAAGAAGGCCAAGACGAAGGAGTACGAGGTGAAGTGGCGAGGCA
AGTCCACCGACTGCAACCTGTGGGTCAGGCGAGACGTGCTCCTGTCCATG
GGCGCCGAGAAAATGGTGCAGAAATTCGACGAGAAGATGGCGGCGGAGGC
GGGGCTCCAGTTCAAGCCCCTGACCACTTCCGCGATCGAGAAGCATTTGG
CCGACTTTGGGATCGATCCGGAGGATGCCTCCCACACCCTGATCAAGTCC
CTCTCGGGGGGGCAGAAGATCAAGGTGGTGATGGCCGCGTGCTTCTGGCA
GAACCCGCACATCATCGTCCTGGACGAGCCCACCAACTACCTGGACCGGG
ACTCCCTCGGCGCCTTGGTGCAGGCCATCCACGACTACAAGGGCGGTGTC
ATCATCATCTCCCACAACCGAGAGTTCGCGGGGGCGGTCTGCCAAGAGAA
GTGGATCATGGACAAGGGCCGCTTGCGTCGGGAGGGGGAGTCGGTAGCCT
TGCACGAGGAGGAGGAGAAAAAGGAGGAGCTTGGGGACAAGGTGGTGATC
GACGCTCTGGGCAACGAGATCAAGATGAAGGGCAATCTGAACGACTTCGT
GGCCAAGTTCCCGGAGAAGAAGAGCTACTTCGTCCTCACCAACGAGAAGG
TCCGCTTCGTCTTCCCCGAGCCCGGGCCCCTGGAAGGTGTCAAGTCCCTC
TCGAAGCACATCCTCAAGATGACGGGCGTGACCTTCCAGTACCCGACGCG
CGACAAGCCGACGGTCATGGACATCTGCCTGGAGGTCTCTCGCGTCTCCC
GCGTGGCCGTGATCGGGCCCAACGGGGCGGGCAAGTCTACGGCCATCAAG
CTCTTGATCGGAGAGTGAACAAGCAAACGACCCTGTCCGACAAGGAAAAG
AAGAAGGAAATCAAGCGGCTGCAAAAAATGATAACCGACGGGCGGAAAAA
GAAGACTCTGAATGAAGATACGATCCTGGACCTAGAGCTGAAGCTGGAGG
AGCTGAAGGCCGCCCCTTGAGCTCACGCCTTCGCAAGGGAGTATCACCAA
GCACCCGAACATGCGCCTGGCCTACGTGGCCCAGCACGCCTTCTTCCACC
TGGAGAAGCACTTGAACGAGACGCCCGCCCAGTACATCATGTGGCGGTTC
GCGGGGAACGAGGACAAGGAGTCCCTGGACCTCCTGAACAAGAAGAAGGA
GGTGGACAAGGAGGTGACCAAGTACTTCATCCGGGAAGGGACGACGCTCT
GCCAGTGCTACTCCCCCGCGGAGGAGAAGCTGGCGGTGGAGCCTGAGGCG
ATCATCAACCGGCACGAGGACAAGAAGGCCAAGACGAAGGAGTACGAGGT
GAAGTGGCGAGGCAAGTCCACCGACTGCAACCTGTGGGTCAGGCGAGACG
TGCTCCTGTCCATGGGCGCCGAGAAAATGGTGCAGAAATTCGACGAGAAG
ATGGCGGCGGAGGCGGGGCTCCAGTTCAAGCCCCTGACCACTTCCGCGAT
CGAGAAGCATTTGGCCGACTTTGGGATCGATCCGGAGGATGCCTCCCACA
CCCTGATCAAGTCCCTCTCGGGGGGGCAGAAGATCAAGGTGGTGATGGCC
GCGTGCTTCTGGCAGAACCCGCACATCATCGTCCTGGACGAGCCCACCAA
CTACCTGGACCGGGACTCCCTCGGCGCCTTGGTGCAGGCCATCCACGACT
ACAAGGGCGGTGTCATCATCATCTCCCACAACCGAGAGTTCGCGGGGGCG
GTCTGCCAAGAGAAGTGGATCATGGACAAGGGCCGCTTGCGTCGGGAGGG
GGAGTCGGTAGCCTTGCACGAGGAGGAGGAGAAAAAGGAGGAGCTTGGGG
ACAAGGTGGTGATCGACGCTCTGGGCAACGAGATCAAGATGAAGGGCAAT
CTGAACGACTTCGTGGCCAAGTTCCCGGAGAAGAAGAGCTACTTCGTCCT
CACCAACGAGAAGGTCCGCTTCGTCTTCCCCGAGCCCGGGCCCCTGGAAG
GTGTCAAGTCCCTCTCGAAGCACATCCTCAAGATGACGGGCGTGACCTTC
CAGTACCCGACGCGCGACAAGCCGACGGTCATGGACATCTGCCTGGAGGT
CTCTCGCGTCTCCCGCGTGGCCGTGATCGGGCCCAACGGGGCGGGCAAGT
CTACGGCCATCAAGCTCTTGATCGGAGAGTGAACAAGCAAACGACCCTGT
CCGACAAGGAAAAGAAGAAGGAAATCAAGCGGCTGCAAAAAATGATAACC
GACGGGCGGAAAAAGAAGACTCTGAATGAAGATACGATCCTGGACCTAGA
GCTGAAGCTGGAGGAGCTGAAGGCCGCCCCTTGAGCTCACGCCTTCGCAA
GGGAGTATCACCAAGCACCCGAACATGCGCCTGGCCTACGTGGCCCAGCA
CGCCTTCTTCCACCTGGAGAAGCACTTGAACGAGACGCCCGCCCAGTACA
TCATGTGGCGGTTCGCGGGGAACGAGGACAAGGAGTCCCTGGACCTCCTG
AACAAGAAGAAGGAGGTGGACAAGGAGGTGACCAAGTACTTCATCCGGGA
AGGGACGACGCTCTGCCAGTGCTACTCCCCCGCGGAGGAGAAGCTGGCGG
TGGAGCCTGAGGCGATCATCAACCGGCACGAGGACAAGAAGGCCAAGACG
AAGGAGTACGAGGTGAAGTGGCGAGGCAAGTCCACCGACTGCAACCTGTG
GGTCAGGCGAGACGTGCTCCTGTCCATGGGCGCCGAGAAAATGGTGCAGA
AATTCGACGAGAAGATGGCGGCGGAGGCGGGGCTCCAGTTCAAGCCCCTG
ACCACTTCCGCGATCGAGAAGCATTTGGCCGACTTTGGGATCGATCCGGA
GGATGCCTCCCACACCCTGATCAAGTCCCTCTCGGGGGGGCAGAAGATCA
AGGTGGTGATGGCCGCGTGCTTCTGGCAGAACCCGCACATCATCGTCCTG
GACGAGCCCACCAACTACCTGGACCGGGACTCCCTCGGCGCCTTGGTGCA
GGCCATCCACGACTACAAGGGCGGTGTCATCATCATCTCCCACAACCGAG
AGTTCGCGGGGGCGGTCTGCCAAGAGAAGTGGATCATGGACAAGGGCCGC
TTGCGTCGGGAGGGGGAGTCGGTAGCCTTGCACGAGGAGGAGGAGAAAAA
GGAGGAGCTTGGGGACAAGGTGGTGATCGACGCTCTGGGCAACGAGATCA
AGATGAAGGGCAATCTGAACGACTTCGTGGCCAAGTTCCCGGAGAAGAAG
AGCTACTTCGTCCTCACCAACGAGAAGGTCCGCTTCGTCTTCCCCGAGCC
CGGGCCCCTGGAAGGTGTCAAGTCCCTCTCGAAGCACATCCTCAAGATGA
CGGGCGTGACCTTCCAGTACCCGACGCGCGACAAGCCGACGGTCATGGAC
ATCTGCCTGGAGGTCTCTCGCGTCTCCCGCGTGGCCGTGATCGGGCCCAA
CGGGGCGGGCAAGTCTACGGCCATCAAGCTCTTGATCGGAGA back to top
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