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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100076g16.8805.mrna |
| Orig protein id | gnl|cribi|Naga_100076g16.8805 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002467.1 | supercontig | CM002467.1:284300..287717 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5984 ID=rna5984|Name=rna5984|organism=Nannochloropsis gaditana|type=mRNA|length=3328bp
AACGGCGCTCGGAGGAAACGAGGCCACGAAAGTCCTTTCATTTAATGGCT
AAGAGCTTCATATTTTGTTAAGGGCTTGAATTGATTCGTCGTATTCACAA
GATTACATTTTGTTTGCAATATTTACCTCTCCTTGAATGCATACTAAGGA
CCTGGCATGGTGAGAGGTTAGCCGTTGAAGAGACAAGCTAAGAAATTCTG
TGGCCGGTAGTGTTGCCGGTCAATTCTTTCTTTCACATCTTTTGTAATGG
AATATATATCCTGGCACTTTTTGGGGAGTTTTGGCACAGTTGCTGCCGTT
TTTCGAATGGTTTTTAGGACGGAATAAGCTGGTTCCAAGAGGGCACGGGA
TCCATTTCTCCTACCCTCTCAAGTATACAAAGATATAGAATATGGCATAT
CTTTGACTATTATAACAGTTAATGGTGACACATTGTAGGAAAAGAAGCCG
GCCTCCAGCAATGTGTGAAGATTTGTCGTAGGAATAGGTAGTATGGGAAA
AGGCCCCGGTCATCTAAGGCGGGGTGATGAAGCAGGCATGGTACGTGTTT
ATAAAAAAAGAGATGGATTTGAGTGAGTTGGCTCGGGAACCTCTCGTCTC
TCACAGAACCAAAACCACGAAAACGTCAACCGGAGAAGGACAACTCTAAT
CGTCCGCTTTCTTCCTGACTTCAAAATCTCCCTCTCATGCCTGTTCCCAC
TTTTCCCCCAGCCTCCCGGTATTCCTCGAGACGTCTCCATGTCCGGGCCC
CGCCCCAATAGCGACAACATCGGGCCATCATGCTCGCCACTGGTGCCAGT
GGCTACCCCTGTGGACCTTCATACGTTGTGGGAGTGGACCATGGCTGTCT
CCTCTTCCTCATCACGCCGGAAACGTTTCCACGCCGTCGTGCAGGGGCTC
GCGGGCGAGAGGGACGAGGCTCTCCACAGGCTCCACGCCGCCGTGTGCGA
GCTCCGGCGGCTACAGCGTGTGGAGAGGGAAAGCAAGAGCTTGCGAGTCG
GCCTCCGGTCGTCGGAGAGAATCCGAGGACAGCTGACATCCTTGCTGGAG
GAGTGCGAGCGCTCCTGGGTCTTGTCTCCTCCTCCCTGCGCCTGTGCCCG
CAAGGACTTTCCTCCGGCTGGCGTCGTGATGGGAGGCGGTCGAGGCGGGG
GGAAAGAGAGCGCCAAGCTGGATGAGGCGGCGGACGAGGGGAAGAAGGAA
GAGCCGAAGGAGGAAAAGGGGAAGGAGAGGGAAGAGAAGAAACTTGCGGT
GGAGAAGGAGGACGAGGAGGAGGAGCAGCAGCAGCAGCAACAGCAGCAAC
AGCAGCAGCAGCAGGAGGAGGAAGAAGAAGAGGAGGAAGCGCATACAGAC
GACGGTGGGGAGAAGGGGGAAAATGAAGACAAGAAAAGAGAAGAAGTTTT
CCGGGGGCACTGGCGGGAATGGGGCCTGACGGAAAGCGAAGAGGGCGGCT
CTCCTGAGGCCGGCCTGGGGGCGAAGAACGCCAGAACGGCAGAAGCCTCC
TCCTTCCCATCCTGCGGGGCAAGCGGTAGCACCCTGACCACTGCCGCCAG
CATCTTGTCGGACGCAGAGGGCTTGCACGCGGTCTTCTGTCGGTATTCCA
GCCTGCAACAGCACCGCTCCAGCGCCCACCGTCCCGTCCCCGCTGCCCTG
GTCGCCAAGCCTTCTCCTCCTTCCTCCTCCGGCATGCCCCCCTCCCTCTT
CTCCTCCCGGGGGGAGCTGCTGGCAGCGGCGAACGAAAGGAGGAAACACG
CGACAGAGACCAAGAGTGCGGTGCTTCATAGCTCGGTGGTAGCTCACGTG
CCTGAAAATAGAGGGGAGGTGACGAGGAGGAAAATGGGCGCCTTAGCAGG
AACAGAATCCGAGGATCGCGTTGTAAAGGCCGGCAGCAGGGGGGATGTCG
AGGGGGAGGAGACCGGCAGTCGTCCTGGGGGAGAGCTGCGGGACGATCCT
GGCATGGGGCCCCTCGATGGGCGGAGGGCAAAAGGCGGGAAGCAGGGAGA
GCAGAAGCCAGAGACGAAGACGAGGACGACGCAGGAAGACAGCAAGGACG
CGCTTTTGGGGTCCAGGTCTCTGGTGCATGTCGGTCATCGCAGACAGAAA
TCCTCCCAGGCCTCCGCCCGCCTCTTTCCTGCGGGCACAGAGACGGCGTG
GGGCAGGCGTGTGGGACCCCGACCCACCAAAGAGGAGCTCTCCTGGCACC
AATATTGCCCTGAGACGCCTTGTCGACGGACGCTTCCATCCATGGTAGCG
CCGTCCGCCCCCCACTCGCCCTCCTTCTTGGCCCTGGCCCCCCTCTTGCC
CGACACCCGGGCGGGCAGACCCAGGAGGGGGAAGGGAACGGGGAGGAAGG
AAGGTAGCCGTCAGAAGGGTTATGCGGGTGCTAGGCCAGCGGAAATGGGT
GGGGTGAGCGGGAAGAGCGTCGATAAGAAGACAAGGACGAGAGGAGTGAT
GGCTCCAGCCACGGCAGGCTCGGTGACCTCCACACGCTTGCTCTCGGCCC
GTGACACGTTAAAAATCTCCTTCCCTGACGCGGACGCCGGACCCCGCCTG
CCTCTTGCGGCCTGGCGCGATGCGGAGGCTCACTCTATTTCTCACACTGC
CACCTCCGTCTCCTCCTCGCGGCGTCTGTGGGTCTAATTGAGGCGATCAA
GGGGAGGGCAAGGAGGAAGTAAGCTAAAGATATGTGTACCCGGGACGTGG
GAAACTTTGAATAGAATTGGGGAGGCCGAGAAGGAGGAAGGATCTGAATT
GTTTCATTCCTGCGACGTGGATTACGTAATCGATTAATTGAGCGAGGGGA
AGGTACAGTGTGGAGGTAGAGGCGAAGGTGAGTGTGGGTTGCCAAAGGGT
CTACCCATCACCCAAATGGAAGCGGATTCTTAATTTTTAAATACCTGCCA
CTGTCCGCCGGCACCAGTAGCGAAAGAAGACGAGAGGAGATAGATTCTGA
CATGATTGATTGAAAGCAGGTAACTTTGACATTCGACAAGACGACGATAC
TGCGGCCAGCGCCGGATGCGTCGGACTGCACCCAGTCGACGATATTTAGA
AAGCATTTTTAGTAATGCCCATTCCAATTCAAATACCTGCCCCGTATGAG
ATTTACTTGGAGTGATGCTTTGTGAAGCTATCGCAATGGCGTCTGTAGAA
AGCACTGCGAATTAGAGGTTCGATTTTTGACTAAGCAAGAATGTGAAGGA
GTGAAAACTCAAACTCAAGTTGTTTGGGAGGGTGCTCCAGACTTTCCCAA
AGGCGGGGAACATGTTAACAATGTTTGCGCGCATAAACAACGTTTTAAAG
GGAAGCAATTTTGTCATTTGCAGAAGTT back to topprotein sequence of rna5984 >rna5984-protein ID=rna5984-protein|Name=rna5984|organism=Nannochloropsis gaditana|type=polypeptide|length=632bp
MSGPRPNSDNIGPSCSPLVPVATPVDLHTLWEWTMAVSSSSSRRKRFHAV
VQGLAGERDEALHRLHAAVCELRRLQRVERESKSLRVGLRSSERIRGQLT
SLLEECERSWVLSPPPCACARKDFPPAGVVMGGGRGGGKESAKLDEAADE
GKKEEPKEEKGKEREEKKLAVEKEDEEEEQQQQQQQQQQQQQEEEEEEEE
AHTDDGGEKGENEDKKREEVFRGHWREWGLTESEEGGSPEAGLGAKNART
AEASSFPSCGASGSTLTTAASILSDAEGLHAVFCRYSSLQQHRSSAHRPV
PAALVAKPSPPSSSGMPPSLFSSRGELLAAANERRKHATETKSAVLHSSV
VAHVPENRGEVTRRKMGALAGTESEDRVVKAGSRGDVEGEETGSRPGGEL
RDDPGMGPLDGRRAKGGKQGEQKPETKTRTTQEDSKDALLGSRSLVHVGH
RRQKSSQASARLFPAGTETAWGRRVGPRPTKEELSWHQYCPETPCRRTLP
SMVAPSAPHSPSFLALAPLLPDTRAGRPRRGKGTGRKEGSRQKGYAGARP
AEMGGVSGKSVDKKTRTRGVMAPATAGSVTSTRLLSARDTLKISFPDADA
GPRLPLAAWRDAEAHSISHTATSVSSSRRLWV back to topmRNA from alignment at CM002467.1:284300..287717- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna5984 ID=rna5984|Name=rna5984|organism=Nannochloropsis gaditana|type=mRNA|length=3418bp|location=Sequence derived from alignment at CM002467.1:284300..287717- (Nannochloropsis gaditana)
AGGAAACGAGGCCACGAAAGTCCTTTCATTTAATGGCTAAGAGCTTCATA
TTTTGTTAAGGGCTTGAATTGATTCGTCGTATTCACAAGATTACATTTTG
TTTGCAATATTTACCTCTCCTTGAATGCATACTAAGGACCTGGCATGGTG
AGAGGTTAGCCGTTGAAGAGACAAGCTAAGAAATTCTGTGGCCGGTAGTG
TTGCCGGTCAATTCTTTCTTTCACATCTTTTGTAATGGAATATATATCCT
GGCACTTTTTGGGGAGTTTTGGCACAGTTGCTGCCGTTTTTCGAATGGTT
TTTAGGACGGAATAAGCTGGTTCCAAGAGGGCACGGGATCCATTTCTCCT
ACCCTCTCAAGTATACAAAGATATAGAATATGGCATATCTTTGACTATTA
TAACAGTTAATGGTGACACATTGTAGGAAAAGAAGCCGGCCTCCAGCAAT
GTGTGAAGATTTGTCGTAGGTAAGCTCGCGATTCCATCCTCAACACCGAT
CTTTGGGGGGGAAACTTTGCACTAATTTGCTAAAGAGAAATAGCCATCCG
CTCGTTCTCTCTTCTCGAAAGGAATAGGTAGTATGGGAAAAGGCCCCGGT
CATCTAAGGCGGGGTGATGAAGCAGGCATGGTACGTGTTTATAAAAAAAG
AGATGGATTTGAGTGAGTTGGCTCGGGAACCTCTCGTCTCTCACAGAACC
AAAACCACGAAAACGTCAACCGGAGAAGGACAACTCTAATCGTCCGCTTT
CTTCCTGACTTCAAAATCTCCCTCTCATGCCTGTTCCCACTTTTCCCCCA
GCCTCCCGGTATTCCTCGAGACGTCTCCATGTCCGGGCCCCGCCCCAATA
GCGACAACATCGGGCCATCATGCTCGCCACTGGTGCCAGTGGCTACCCCT
GTGGACCTTCATACGTTGTGGGAGTGGACCATGGCTGTCTCCTCTTCCTC
ATCACGCCGGAAACGTTTCCACGCCGTCGTGCAGGGGCTCGCGGGCGAGA
GGGACGAGGCTCTCCACAGGCTCCACGCCGCCGTGTGCGAGCTCCGGCGG
CTACAGCGTGTGGAGAGGGAAAGCAAGAGCTTGCGAGTCGGCCTCCGGTC
GTCGGAGAGAATCCGAGGACAGCTGACATCCTTGCTGGAGGAGTGCGAGC
GCTCCTGGGTCTTGTCTCCTCCTCCCTGCGCCTGTGCCCGCAAGGACTTT
CCTCCGGCTGGCGTCGTGATGGGAGGCGGTCGAGGCGGGGGGAAAGAGAG
CGCCAAGCTGGATGAGGCGGCGGACGAGGGGAAGAAGGAAGAGCCGAAGG
AGGAAAAGGGGAAGGAGAGGGAAGAGAAGAAACTTGCGGTGGAGAAGGAG
GACGAGGAGGAGGAGCAGCAGCAGCAGCAACAGCAGCAACAGCAGCAGCA
GCAGGAGGAGGAAGAAGAAGAGGAGGAAGCGCATACAGACGACGGTGGGG
AGAAGGGGGAAAATGAAGACAAGAAAAGAGAAGAAGTTTTCCGGGGGCAC
TGGCGGGAATGGGGCCTGACGGAAAGCGAAGAGGGCGGCTCTCCTGAGGC
CGGCCTGGGGGCGAAGAACGCCAGAACGGCAGAAGCCTCCTCCTTCCCAT
CCTGCGGGGCAAGCGGTAGCACCCTGACCACTGCCGCCAGCATCTTGTCG
GACGCAGAGGGCTTGCACGCGGTCTTCTGTCGGTATTCCAGCCTGCAACA
GCACCGCTCCAGCGCCCACCGTCCCGTCCCCGCTGCCCTGGTCGCCAAGC
CTTCTCCTCCTTCCTCCTCCGGCATGCCCCCCTCCCTCTTCTCCTCCCGG
GGGGAGCTGCTGGCAGCGGCGAACGAAAGGAGGAAACACGCGACAGAGAC
CAAGAGTGCGGTGCTTCATAGCTCGGTGGTAGCTCACGTGCCTGAAAATA
GAGGGGAGGTGACGAGGAGGAAAATGGGCGCCTTAGCAGGAACAGAATCC
GAGGATCGCGTTGTAAAGGCCGGCAGCAGGGGGGATGTCGAGGGGGAGGA
GACCGGCAGTCGTCCTGGGGGAGAGCTGCGGGACGATCCTGGCATGGGGC
CCCTCGATGGGCGGAGGGCAAAAGGCGGGAAGCAGGGAGAGCAGAAGCCA
GAGACGAAGACGAGGACGACGCAGGAAGACAGCAAGGACGCGCTTTTGGG
GTCCAGGTCTCTGGTGCATGTCGGTCATCGCAGACAGAAATCCTCCCAGG
CCTCCGCCCGCCTCTTTCCTGCGGGCACAGAGACGGCGTGGGGCAGGCGT
GTGGGACCCCGACCCACCAAAGAGGAGCTCTCCTGGCACCAATATTGCCC
TGAGACGCCTTGTCGACGGACGCTTCCATCCATGGTAGCGCCGTCCGCCC
CCCACTCGCCCTCCTTCTTGGCCCTGGCCCCCCTCTTGCCCGACACCCGG
GCGGGCAGACCCAGGAGGGGGAAGGGAACGGGGAGGAAGGAAGGTAGCCG
TCAGAAGGGTTATGCGGGTGCTAGGCCAGCGGAAATGGGTGGGGTGAGCG
GGAAGAGCGTCGATAAGAAGACAAGGACGAGAGGAGTGATGGCTCCAGCC
ACGGCAGGCTCGGTGACCTCCACACGCTTGCTCTCGGCCCGTGACACGTT
AAAAATCTCCTTCCCTGACGCGGACGCCGGACCCCGCCTGCCTCTTGCGG
CCTGGCGCGATGCGGAGGCTCACTCTATTTCTCACACTGCCACCTCCGTC
TCCTCCTCGCGGCGTCTGTGGGTCTAATTGAGGCGATCAAGGGGAGGGCA
AGGAGGAAGTAAGCTAAAGATATGTGTACCCGGGACGTGGGAAACTTTGA
ATAGAATTGGGGAGGCCGAGAAGGAGGAAGGATCTGAATTGTTTCATTCC
TGCGACGTGGATTACGTAATCGATTAATTGAGCGAGGGGAAGGTACAGTG
TGGAGGTAGAGGCGAAGGTGAGTGTGGGTTGCCAAAGGGTCTACCCATCA
CCCAAATGGAAGCGGATTCTTAATTTTTAAATACCTGCCACTGTCCGCCG
GCACCAGTAGCGAAAGAAGACGAGAGGAGATAGATTCTGACATGATTGAT
TGAAAGCAGGTAACTTTGACATTCGACAAGACGACGATACTGCGGCCAGC
GCCGGATGCGTCGGACTGCACCCAGTCGACGATATTTAGAAAGCATTTTT
AGTAATGCCCATTCCAATTCAAATACCTGCCCCGTATGAGATTTACTTGG
AGTGATGCTTTGTGAAGCTATCGCAATGGCGTCTGTAGAAAGCACTGCGA
ATTAGAGGTTCGATTTTTGACTAAGCAAGAATGTGAAGGAGTGAAAACTC
AAACTCAAGTTGTTTGGGAGGGTGCTCCAGACTTTCCCAAAGGCGGGGAA
CATGTTAACAATGTTTGCGCGCATAAACAACGTTTTAAAGGGAAGCAATT
TTGTCATTTGCAGAAGTT back to topCoding sequence (CDS) from alignment at CM002467.1:284300..287717- >rna5984 ID=rna5984|Name=rna5984|organism=Nannochloropsis gaditana|type=CDS|length=1899bp|location=Sequence derived from alignment at CM002467.1:284300..287717- (Nannochloropsis gaditana)
ATGTCCGGGCCCCGCCCCAATAGCGACAACATCGGGCCATCATGCTCGCC
ACTGGTGCCAGTGGCTACCCCTGTGGACCTTCATACGTTGTGGGAGTGGA
CCATGGCTGTCTCCTCTTCCTCATCACGCCGGAAACGTTTCCACGCCGTC
GTGCAGGGGCTCGCGGGCGAGAGGGACGAGGCTCTCCACAGGCTCCACGC
CGCCGTGTGCGAGCTCCGGCGGCTACAGCGTGTGGAGAGGGAAAGCAAGA
GCTTGCGAGTCGGCCTCCGGTCGTCGGAGAGAATCCGAGGACAGCTGACA
TCCTTGCTGGAGGAGTGCGAGCGCTCCTGGGTCTTGTCTCCTCCTCCCTG
CGCCTGTGCCCGCAAGGACTTTCCTCCGGCTGGCGTCGTGATGGGAGGCG
GTCGAGGCGGGGGGAAAGAGAGCGCCAAGCTGGATGAGGCGGCGGACGAG
GGGAAGAAGGAAGAGCCGAAGGAGGAAAAGGGGAAGGAGAGGGAAGAGAA
GAAACTTGCGGTGGAGAAGGAGGACGAGGAGGAGGAGCAGCAGCAGCAGC
AACAGCAGCAACAGCAGCAGCAGCAGGAGGAGGAAGAAGAAGAGGAGGAA
GCGCATACAGACGACGGTGGGGAGAAGGGGGAAAATGAAGACAAGAAAAG
AGAAGAAGTTTTCCGGGGGCACTGGCGGGAATGGGGCCTGACGGAAAGCG
AAGAGGGCGGCTCTCCTGAGGCCGGCCTGGGGGCGAAGAACGCCAGAACG
GCAGAAGCCTCCTCCTTCCCATCCTGCGGGGCAAGCGGTAGCACCCTGAC
CACTGCCGCCAGCATCTTGTCGGACGCAGAGGGCTTGCACGCGGTCTTCT
GTCGGTATTCCAGCCTGCAACAGCACCGCTCCAGCGCCCACCGTCCCGTC
CCCGCTGCCCTGGTCGCCAAGCCTTCTCCTCCTTCCTCCTCCGGCATGCC
CCCCTCCCTCTTCTCCTCCCGGGGGGAGCTGCTGGCAGCGGCGAACGAAA
GGAGGAAACACGCGACAGAGACCAAGAGTGCGGTGCTTCATAGCTCGGTG
GTAGCTCACGTGCCTGAAAATAGAGGGGAGGTGACGAGGAGGAAAATGGG
CGCCTTAGCAGGAACAGAATCCGAGGATCGCGTTGTAAAGGCCGGCAGCA
GGGGGGATGTCGAGGGGGAGGAGACCGGCAGTCGTCCTGGGGGAGAGCTG
CGGGACGATCCTGGCATGGGGCCCCTCGATGGGCGGAGGGCAAAAGGCGG
GAAGCAGGGAGAGCAGAAGCCAGAGACGAAGACGAGGACGACGCAGGAAG
ACAGCAAGGACGCGCTTTTGGGGTCCAGGTCTCTGGTGCATGTCGGTCAT
CGCAGACAGAAATCCTCCCAGGCCTCCGCCCGCCTCTTTCCTGCGGGCAC
AGAGACGGCGTGGGGCAGGCGTGTGGGACCCCGACCCACCAAAGAGGAGC
TCTCCTGGCACCAATATTGCCCTGAGACGCCTTGTCGACGGACGCTTCCA
TCCATGGTAGCGCCGTCCGCCCCCCACTCGCCCTCCTTCTTGGCCCTGGC
CCCCCTCTTGCCCGACACCCGGGCGGGCAGACCCAGGAGGGGGAAGGGAA
CGGGGAGGAAGGAAGGTAGCCGTCAGAAGGGTTATGCGGGTGCTAGGCCA
GCGGAAATGGGTGGGGTGAGCGGGAAGAGCGTCGATAAGAAGACAAGGAC
GAGAGGAGTGATGGCTCCAGCCACGGCAGGCTCGGTGACCTCCACACGCT
TGCTCTCGGCCCGTGACACGTTAAAAATCTCCTTCCCTGACGCGGACGCC
GGACCCCGCCTGCCTCTTGCGGCCTGGCGCGATGCGGAGGCTCACTCTAT
TTCTCACACTGCCACCTCCGTCTCCTCCTCGCGGCGTCTGTGGGTCTAA back to top
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