rna5982, rna5982 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5982
Unique Name	rna5982
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1878
Alignment location	CM002467.1:281903..284381 +

Link to JBrowse

Properties


Property Name	Value
Product	3-ketoacyl- thiolase peroxisomal
Orig transcript id	gnl\|cribi\|Naga_100076g17.8813.mrna
Orig protein id	gnl\|cribi\|Naga_100076g17.8813
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:281903..284381 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100076g17	gene5780	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5982	rna5982-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24705.1	cds5967	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:281903..284381+
coding sequence from alignment at CM002467.1:281903..284381+

mRNA sequence

>rna5982 ID=rna5982|Name=rna5982|organism=Nannochloropsis gaditana|type=mRNA|length=1878bp
ATGACAAATAAAGCCATGGCTTTCCTTGGAGACCAACACCATCGCGAAGA
CGAGCGGCGACAATCGATCGAATGCTCAGGGCTTCAGCATGCTATCAGAC
CTGCAACGCGCCAAGAGACAGCATTGCCATCCCGATCAAATTCCACGGCA
TCAGAGGACGACGAGGACATCCAAAGCGACCTCGTGCCTTCGGCCAATAC
ATTCATCCGCAAGCTCTTTCAAATGGTCACGAGTGAGAACAATGACATCA
TCTCCTTTACTCCAGATGGTCTCTCCTTCCACGTGAAAGACCCCGTCCGT
CTCGAGAACGAAGTGCTCCCCAAGTACTTCCGCCACTCCCGCTTTCAATC
GTTGGTCCGCCAGCTCAACTTCTACGATTTTAAAAAGATCAGCAAAGAGC
GCGTGATCTGGATCTACCGGCACAAGCTCTTCCAGCAAGGCAAGCCCCAC
CTCTTGGACGACTTGAAACGGAAGCCATCCGCCTCCCTAGTCAAAAGCCG
GACAGAATCCTCGTCCCGCCGGGGCAGCGGCAGCATGGGCCGGCACGGCG
CAGGCAACAGCCATAGCGTCGGCCGGCCCATGTCCGCATCCGGGAGCCGC
CGTGGGAGCAGGTCCGTCTCGCCTCTCTGCAGCTTCGAGTCAGGGACCAC
CACTCCCTCCTCCTCCGATAGCAGCCCCAGCATTTCGCCTAGCCGGGGGG
CCCTCAAGCGCACGCGCCGACAAGAAGCCTCCCTCTCCCGCGCCTCTTCC
GAGTCCTCCTCCCTCACCTCTTCCGAGTCCTCCCCCGTTCCGTACGACGA
TGCGAAGCACTTGGTGGCGGGTGTGACGGGGGCGGGCATGACTTGCCTGG
AGACCCTTTCACAAGCCGCCAGTTCGGTCGGTCAGAATGCCCCGAAGGCA
GCGCGGCTGGAAAGAGAGGCTGCCGCCTCCTACGGCTCTCACGGGGAGGA
GGAGCAGGAGCAGGAGCAGGAGGAGGGGATGCAAGTCTCGTATTGGCAGC
CGCCGGACGAGGGGCCTGAGGAGGAAGTGGAGGTGCAGAAGGAAGAGGAG
GATGAGGCGTGCTGGGTGATGAAGACGATGATGATGCGGGGACGGGAGGG
GGGCGCGGAGTCGGGCTTCGAGGAGGGAATGCAGGCGCTGCCGGACGAGG
AGGAGATCGTGGTCGTGACCAAGGCAAGCTTTGCCCCCACCTTGGCGAAA
AAGGAGGGCCCACAGGGGCACAAAGCGCATCCTCCCTCCCTTCCATTCGC
CCACGGCCCGCGAGAGACGAGTCCGGGCCCCGAGAAGTCCTCCCTCGGAC
ACCTTGGAGTCAAGCCTCTCCCCCCTCCCTCCTTCCCTCCTTCCTCGCTT
CCCCCCGACCTCCCTCCCCCGACCTCCTACCACCCGTCCCGGGAGGAGCT
TCGGACGTGGGGCTATATACAGAGCCAGTGGAGTGCCGCCGGGCAGTCCC
AGCAGCAAGCCCTCCTCGCCTCCCTCCCCAGCCATTGTCACCAGGCGTGG
GCCTCCTTCTTCCTCATCATCCCCCCCTTCCAAACACATCAACGCCTCAT
TCGCGCCTGTCACCGCCTCCTATGCTCCAACCCTGCCTTGGCCGCGTCCG
TGACCGAGCATCGCCACGCCCTCGATCCTCTGGGCCGTAGCGCCGACAGC
ACCTTCCTCCTGCCCGCGGACGCAGGGGAGGAGGAGGTCGAGAAGCTGAG
CATTGGGACCGTCGCGGCGGGGCACAATGACCGCGCACTCCGGGAGGTGC
TGGGCTTCGGCTTGAATCATTTGGTGGAGTCCGCCCGCTTCCTTCACACC
ACCGAGGGATCACCGGCCGCCCTGGCTCTGCGGGAGTGTCTGCAGGCGTG
GAAGTGCCACATGGGCCGGTGGCTGTGA

protein sequence of rna5982

>rna5982-protein ID=rna5982-protein|Name=rna5982|organism=Nannochloropsis gaditana|type=polypeptide|length=424bp
MSSTQTSQANKRLEHLSGHLVKKTSRPGFLGGDVVVVSALRTPLCKAKRG
AFKSTTTDDLLAPVLEAVVKQSGVDAATLGDIVVGNVLQPGSGAVGARMA
QFYAGIPYQVPLCTLNRQCSSGLQAFLQVAASIQSGLYEAGIAGGVESMS
LTDMSTSVPDVNFERVSENALSKDCTIPMGQTSDEVATRFQVSREDQDRF
AAASHAKAEAAVKAGKFAEEIVPVRVSSGGEDGGEDEVTVVREDEGIRPG
TTPEKLGGLRSSFSEGGSTTAGNSSQMTDGAAAVLVMSRGAATAQGMPVM
GVLRGAAVVGVPPDIMGIGPAVAIPAALAQARLRVEDVDVFEINEAFASQ
CLYCVRELKIPMEKVNPNGGAIALGHPLGATGARQIATLLHEMRRTRKRW
GVVSMCIGTGMGAAAVFENEAAAN

mRNA from alignment at CM002467.1:281903..284381+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5982 ID=rna5982|Name=rna5982|organism=Nannochloropsis gaditana|type=mRNA|length=2479bp|location=Sequence derived from alignment at CM002467.1:281903..284381+ (Nannochloropsis gaditana)
GAGTGTTACACGTGTACAAAATACCATACTTTCGGATGTGTTGCTTATCA
TTGAGCCTCTATCGTTGACTTACACCAAATAGGGATCATCGCTTCATTCA
CGTAGGCAAAGCACTTTTTCTTGTTCATCTTCTCCGCAACCAAAGTCACC
AAAGCAAACTATGAGCAGCACACAAACTTCGCAAGCCAACAAGCGGCTGG
AGCACCTTAGTGGACATCTGGTCAAAAAGGTGCGTGCCTCGTAAAGTGAT
AAATGAGATGTTTTTCATGGCCTACTTTCTTGTCGACGTGATGGACAAGG
CAACTTCAACGCAGCTTTGCCTTTTGAACGTACCGGCACTCTGCCACAAG
ATTCAGCATTTATGCCGCTACTCAGGAAGAAACGCACATATATACGTGTT
TGATGTCTGAAGTGGCCATCAGAACACAGTTCTTCTTTGTGTCCAGGGCT
AGTGTGCCTCTCCGCGTCTATGACAATTGCCTACGATTCCCGTCTTCTGA
TCtttgtcttcttttccctccacaaTACAGACTAGCAGGCCGGGATTCCT
CGGGGGGGACGTTGTGGTCGTCTCGGCATTGCGCACTCCGCTATGTAAGG
CTAAGCGTGGGGCTTTCAAGAGCACCACCACGGACGACCTACTGGCCCCG
GtattggaggcggtggtgaagCAGTCTGGCGTCGACGCAGCCACGCTTGG
TGATATTGTTGTGGGTAACGTCCTACAACCTGGTTCTGGAGCGGTGGGTG
CGCGTATGGCTCAATTTTATGCCGGGATCCCGTATCAGGTACCGCCGGAA
GTggggccgggcggaggggaagcaggcagaggagcaggaagggaaggagg
aagggaaaaagaaaggaaagtagaaaaggaaggaataTGTTGCGGGAGGT
ATAGTGTATGTTGGCTTTGAAAGTTCAAAACAGAAAGGCCGATTTTTCCT
GCCGATCACCTAACGCAGACCGTTGAAAGCGGGGAAACCCAGGACGCAGA
GCTCACAGACCTggtctctccccctcctttccctcctttccccttcctcc
ctccctcccccttcttccctccctcccctcggtaGGTACCCCTTTGCACG
CTGAACCGTCAGTGCTCCTCGGGCCTCCAGGCTTTCCTCCAGGTGGCTGC
CAGCATCCAGTCCGGCCTCTACGAGGCGGGCATTGCCGGCGGCGTGGAGA
GCATGTCCCTGACGGATATGAGTACCTCGGTGCCCGATGTAAATTTCGAA
CGGGTCAGCGAGAACGCGCTCAGCAAGGACTGCACCATCCCTATGGGCCA
GACCAGTGACGAGGTGGCGACCCGCTTCCAAGTTTCGAGGGAAGATCAGG
ATCGGTTTGCGGCGGCTTCGCAcgccaaggcggaggcggcggtgaaGGCA
GGCAAGTTCGCCGAGGAGATCGTGCCCGTGCGGGTGtcgagcggggggga
ggacgggggggaggacgaggtgacggtggtgagggaggacgagggcatTC
GACCGGGCACGACGCCTGAGAAGCTGGGAGGCCTGCGGTCATCCTtctcg
gagggcgggagcaccACGGCCGGAAACAGCAGCCAGATGACGGACGGAGC
GGCGGCCGTGCTGGTGATGAGTCGGGGGGCGGCCACGGCGCAGGGAATGC
CCGTGATGGGCGTTTTGAGGGGGGccgcggtggtgggggtACCCCCTGAT
ATCATGGGGATTGGCCCCGCCGTGGCCATCccggccgccctcgcccaggc
ccgGCTGCGGGTGGAGGATGTGGATGTGTTTGAGATAAATGAGGCCTTTG
CCAGCCAGTGTCTGTACTGCGTGCGCGAGCTCAAGATCCCGATGGAGAAG
GTAAACCCGAACGGGGGGGCCATTGCTCTCGGTCATCCCTTAGGGGCGAC
GGGGGCCAGGCAAATCGCCACGCTGCTGCACGAGATGCGACGGACGAGAA
AGCGATGGGGGGTTGTGAGCATGTGCATCGGCACGGGGATGGGCGCGGCG
GCGGTGTTTGAGAACGAGGCGGCGGCAAACTGAGTCAagccgggggggaa
tggcCGAGCAgacgggagggtgggggggagatgcgtgggagaggaggagg
cacgggTGCGGAGATGGGAGGCTGTAAAGGAGGATTGGAAAGGAACGAGA
TTGTCCTCCAGGGAGGTCGTGGCCGAGGGGGATGGCCGGACGGGTTTTGA
TCGGTGTTTGGGGGTAGGCTCTCACCAGTCGAGATGTTCATGGGACGGTG
ACCTAGGGCAGACGTGGTgtggggagaaggtggcgaCCGTGTGCACTCAA
GAGGAATGGAGTGCTTACTGCGTCGTCAGACCCACCAAGACACCCCCACC
AAGAAGTAAGGAGACCAAGGTCAAAGTGTCCGAGTCCGTCGATCGAGAAC
TTCTGCAAATGACAAAATTGCTTCCCTTTAAAACGTTGTTTATGCGCGCA
AACATTGTTAACATGTTCCCCGCCTTTGG

Coding sequence (CDS) from alignment at CM002467.1:281903..284381+

>rna5982 ID=rna5982|Name=rna5982|organism=Nannochloropsis gaditana|type=CDS|length=3825bp|location=Sequence derived from alignment at CM002467.1:281903..284381+ (Nannochloropsis gaditana)
ATGAGCAGCACACAAACTTCGCAAGCCAACAAGCGGCTGGAGCACCTTAG
TGGACATCTGGTCAAAAAGACTAGCAGGCCGGGATTCCTCGGGGGGGACG
TTGTGGTCGTCTCGGCATTGCGCACTCCGCTATGTAAGGCTAAGCGTGGG
GCTTTCAAGAGCACCACCACGGACGACCTACTGGCCCCGGtattggaggc
ggtggtgaagCAGTCTGGCGTCGACGCAGCCACGCTTGGTGATATTGTTG
TGGGTAACGTCCTACAACCTGGTTCTGGAGCGGTGGGTGCGCGTATGGCT
CAATTTTATGCCGGGATCCCGTATCAGGTACCCCTTTGCACGCTGAACCG
TCAGTGCTCCTCGGGCCTCCAGGCTTTCCTCCAGGTGGCTGCCAGCATCC
AGTCCGGCCTCTACGAGGCGGGCATTGCCGGCGGCGTGGAGAGCATGTCC
CTGACGGATATGAGTACCTCGGTGCCCGATGTAAATTTCGAACGGGTCAG
CGAGAACGCGCTCAGCAAGGACTGCACCATCCCTATGGGCCAGACCAGTG
ACGAGGTGGCGACCCGCTTCCAAGTTTCGAGGGAAGATCAGGATCGGTTT
GCGGCGGCTTCGCAcgccaaggcggaggcggcggtgaaGGCAGGCAAGTT
CGCCGAGGAGATCGTGCCCGTGCGGGTGtcgagcgggggggaggacgggg
gggaggacgaggtgacggtggtgagggaggacgagggcatTCGACCGGGC
ACGACGCCTGAGAAGCTGGGAGGCCTGCGGTCATCCTtctcggagggcgg
gagcaccACGGCCGGAAACAGCAGCCAGATGACGGACGGAGCGGCGGCCG
TGCTGGTGATGAGTCGGGGGGCGGCCACGGCGCAGGGAATGCCCGTGATG
GGCGTTTTGAGGGGGGccgcggtggtgggggtACCCCCTGATATCATGGG
GATTGGCCCCGCCGTGGCCATCccggccgccctcgcccaggcccgGCTGC
GGGTGGAGGATGTGGATGTGTTTGAGATAAATGAGGCCTTTGCCAGCCAG
TGTCTGTACTGCGTGCGCGAGCTCAAGATCCCGATGGAGAAGGTAAACCC
GAACGGGGGGGCCATTGCTCTCGGTCATCCCTTAGGGGCGACGGGGGCCA
GGCAAATCGCCACGCTGCTGCACGAGATGCGACGGACGAGAAAGCGATGG
GGGGTTGTGAGCATGTGCATCGGCACGGGGATGGGCGCGGCGGCGGTGTT
TGAGAACGAGGCGGCGGCAAACTGAATGAGCAGCACACAAACTTCGCAAG
CCAACAAGCGGCTGGAGCACCTTAGTGGACATCTGGTCAAAAAGACTAGC
AGGCCGGGATTCCTCGGGGGGGACGTTGTGGTCGTCTCGGCATTGCGCAC
TCCGCTATGTAAGGCTAAGCGTGGGGCTTTCAAGAGCACCACCACGGACG
ACCTACTGGCCCCGGtattggaggcggtggtgaagCAGTCTGGCGTCGAC
GCAGCCACGCTTGGTGATATTGTTGTGGGTAACGTCCTACAACCTGGTTC
TGGAGCGGTGGGTGCGCGTATGGCTCAATTTTATGCCGGGATCCCGTATC
AGGTACCCCTTTGCACGCTGAACCGTCAGTGCTCCTCGGGCCTCCAGGCT
TTCCTCCAGGTGGCTGCCAGCATCCAGTCCGGCCTCTACGAGGCGGGCAT
TGCCGGCGGCGTGGAGAGCATGTCCCTGACGGATATGAGTACCTCGGTGC
CCGATGTAAATTTCGAACGGGTCAGCGAGAACGCGCTCAGCAAGGACTGC
ACCATCCCTATGGGCCAGACCAGTGACGAGGTGGCGACCCGCTTCCAAGT
TTCGAGGGAAGATCAGGATCGGTTTGCGGCGGCTTCGCAcgccaaggcgg
aggcggcggtgaaGGCAGGCAAGTTCGCCGAGGAGATCGTGCCCGTGCGG
GTGtcgagcgggggggaggacgggggggaggacgaggtgacggtggtgag
ggaggacgagggcatTCGACCGGGCACGACGCCTGAGAAGCTGGGAGGCC
TGCGGTCATCCTtctcggagggcgggagcaccACGGCCGGAAACAGCAGC
CAGATGACGGACGGAGCGGCGGCCGTGCTGGTGATGAGTCGGGGGGCGGC
CACGGCGCAGGGAATGCCCGTGATGGGCGTTTTGAGGGGGGccgcggtgg
tgggggtACCCCCTGATATCATGGGGATTGGCCCCGCCGTGGCCATCccg
gccgccctcgcccaggcccgGCTGCGGGTGGAGGATGTGGATGTGTTTGA
GATAAATGAGGCCTTTGCCAGCCAGTGTCTGTACTGCGTGCGCGAGCTCA
AGATCCCGATGGAGAAGGTAAACCCGAACGGGGGGGCCATTGCTCTCGGT
CATCCCTTAGGGGCGACGGGGGCCAGGCAAATCGCCACGCTGCTGCACGA
GATGCGACGGACGAGAAAGCGATGGGGGGTTGTGAGCATGTGCATCGGCA
CGGGGATGGGCGCGGCGGCGGTGTTTGAGAACGAGGCGGCGGCAAACTGA
ATGAGCAGCACACAAACTTCGCAAGCCAACAAGCGGCTGGAGCACCTTAG
TGGACATCTGGTCAAAAAGACTAGCAGGCCGGGATTCCTCGGGGGGGACG
TTGTGGTCGTCTCGGCATTGCGCACTCCGCTATGTAAGGCTAAGCGTGGG
GCTTTCAAGAGCACCACCACGGACGACCTACTGGCCCCGGtattggaggc
ggtggtgaagCAGTCTGGCGTCGACGCAGCCACGCTTGGTGATATTGTTG
TGGGTAACGTCCTACAACCTGGTTCTGGAGCGGTGGGTGCGCGTATGGCT
CAATTTTATGCCGGGATCCCGTATCAGGTACCCCTTTGCACGCTGAACCG
TCAGTGCTCCTCGGGCCTCCAGGCTTTCCTCCAGGTGGCTGCCAGCATCC
AGTCCGGCCTCTACGAGGCGGGCATTGCCGGCGGCGTGGAGAGCATGTCC
CTGACGGATATGAGTACCTCGGTGCCCGATGTAAATTTCGAACGGGTCAG
CGAGAACGCGCTCAGCAAGGACTGCACCATCCCTATGGGCCAGACCAGTG
ACGAGGTGGCGACCCGCTTCCAAGTTTCGAGGGAAGATCAGGATCGGTTT
GCGGCGGCTTCGCAcgccaaggcggaggcggcggtgaaGGCAGGCAAGTT
CGCCGAGGAGATCGTGCCCGTGCGGGTGtcgagcgggggggaggacgggg
gggaggacgaggtgacggtggtgagggaggacgagggcatTCGACCGGGC
ACGACGCCTGAGAAGCTGGGAGGCCTGCGGTCATCCTtctcggagggcgg
gagcaccACGGCCGGAAACAGCAGCCAGATGACGGACGGAGCGGCGGCCG
TGCTGGTGATGAGTCGGGGGGCGGCCACGGCGCAGGGAATGCCCGTGATG
GGCGTTTTGAGGGGGGccgcggtggtgggggtACCCCCTGATATCATGGG
GATTGGCCCCGCCGTGGCCATCccggccgccctcgcccaggcccgGCTGC
GGGTGGAGGATGTGGATGTGTTTGAGATAAATGAGGCCTTTGCCAGCCAG
TGTCTGTACTGCGTGCGCGAGCTCAAGATCCCGATGGAGAAGGTAAACCC
GAACGGGGGGGCCATTGCTCTCGGTCATCCCTTAGGGGCGACGGGGGCCA
GGCAAATCGCCACGCTGCTGCACGAGATGCGACGGACGAGAAAGCGATGG
GGGGTTGTGAGCATGTGCATCGGCACGGGGATGGGCGCGGCGGCGGTGTT
TGAGAACGAGGCGGCGGCAAACTGA

Synonyms

Publications