rna5980, rna5980 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5980
Unique Name	rna5980
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3657
Alignment location	CM002467.1:278020..278833 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100076g19.8803.mrna
Orig protein id	gnl\|cribi\|Naga_100076g19.8803
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:278020..278833 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100076g19	gene5778	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5980	rna5980-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24695.1	cds5965	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:278020..278833-
coding sequence from alignment at CM002467.1:278020..278833-

mRNA sequence

>rna5980 ID=rna5980|Name=rna5980|organism=Nannochloropsis gaditana|type=mRNA|length=3657bp
CTCGAGCGACCAGCCTGTTGCCATGACGACGCGGAGCAGCCGTAGCAGCA
ATAGCGGTGTCAAAAATGACCAAAGTAGTGGTAATAATATCCAGCGTACT
GCTTCTAAGGGGGGTCCAACCATACAACGTGTCGTTGATATGCTTTTTGA
TACTAGCCGTGCGGCCAAGGAGCAGCTGGAGGCCGAACACAAGGAGCATC
TAGGCTGGCTTGCAAATGCTTTGAATCATCTCCGGACGCGGGTGCTTGCG
GGTGAGATGGATGAGGCGGCTGTGGAAGGAAAAATGAATACCAGCGATCA
AATATCGGAGGCTAGCGGTGCAGAGCAGCACGTGCGACAATCAAAAAGAA
AGAAGGAGTATGCCTGTCGGCCCCGCACCTCGAAAGGCTTGCTCGATGCA
TCCACGGACGAGGAGGACGATAATTTCTCGATGGCCTCCACCGTTGTGGC
TGACGAAGGAAGTCAAGTCGGTTGCGCATCCCGTCGGGGTAAGCGAAGAC
ACGCCGCTGCGATGAAAGACGACCACGAGGACGGTATTGAGCACGAGGAA
GGGAGCGATAGCTGCGCGGATCAGATCGAAAGTGGCGACAAGTCAAAGCT
TGCCCAAACCCTAGTACCCAGTAAATTGCGAGTCGTAGATTTGCGACGAG
AGCTACGGGCGCGGGGTTTACCTTCGTCGGGCCTGAAAGCGCAACTGGTG
GAGAAACTGGAAGCGGCCCTGGAAATGGAAGACTTGGAGGGAGAGAAAGA
GCCAGAGCTGCCCGAGATTCTTGAAGGAGACGAGGAGGAAAACGACGACG
AGGTGCAGGAGGGAGCCGAGCAGGTGCAGCGAGCAGCCAAGGTAGCGAAA
CATTCGGCCTCCACCTCTTCTGCTTCCTCTTACTCCTCCGCCATCGCTCC
CTCTGAGGAAGCTGCTCCTCCCGTACCGTCGTCACGAAGAATGTCGCGTT
CCAGCAAGGCCAAAAACTCCGGCGGGGCTGCCAAAAAACTCCAGTCACGG
CCCTCCTCCAGTGACAGCAATTGCCGTCGCAGCAGTCGGGGTATGAAGAG
CGCTGCCAGCGCCATGGGGGTGGAGACGCAGACCCATGACGCTGGAGCAC
ATGAGCCGGAGCTTCCCGCAGTAGATGAGGGAGCATCCGCCGAGAGCTTC
TCCATTGGGGAAGATGTCACGCCGGGAAGCCAGGCTCCAGTAGCGGTTTC
GCCTCAGGAGGGGGCTGTACTTGCGAACGACCCTGCCTGTACCAACAACG
GGGGCGCCTCCCGTCATACCGGAGACTCTCGAGCGGAAACAGCCGTGGTG
GAGGCCGTGGCGGAACAAGTTTCGAGTGCCAGGGAAATTCTCGCCCCGAC
CCCGGCCCCGGTCGTGACGTCCGCCGGCAAGGAGAAGCTTGACTCTGTCT
CCCGATCGCTTCCCACGCCGGTGCCTTCTTCCTCTTCCACCGCTTCTTCC
GTCAATTCCCTCCTGCAAAGCAGCGCCGGCAGCAGCACAAGCGGGGCGGG
ATCTGGTTCGGGCCACGCCCTCGCCAAAGCGCCCTCGTCGGCGAAGGACA
TCGCCGCAAAAATTTCGGCCTTGCGGAGGGGCCAGCTGGAAGAGAAGTCC
CGAGCCAATAAAGGGGGCGGAGCCAGCGCGAGTTCCCGCAGTGCCAATGC
CGCGGCCTCTTCGACGGCCCAAGCTAACGCCGCCACCCTCACTCAGCCGC
TCTCCTTTCTGGAGCGATTGAAGCTCACGACTGCCTCTTTCGCTAGCGGA
AACGCCTCCAGCCACAGCAACGCCAATAGCAGCAACAGCAGCAAGGCACC
GGCCGCGGCTCCCAAGCCCGCGCCTGTGGAGGCAGTCTCTCTTGTCAGCG
ACGCAGACACGTCGGTGCCGCCACTCAAGGCCGCATCCACGACCCCGCTC
CCTGCCACTGCCGCTCCGCCCCCCCCAAGCGGCTCGAATCCTCCTGACCC
GGCCGACGACAGCCCCACGGGCAGCGTTAGCGCGGCCCGTCTCGAGTCGA
GCACGGGCCATGCAAGCCACCTTGGTAAGGGTGCCGCGGAGGAGACGCCC
GTGTCGGGCATGGATCAGAGGAACACCGAGAGGGCAGGAGCAGAGGCGTC
GCACCAAAGTGACACCATCGCCGCCAAAACCATGCCCGTGGTCAAAAATG
CGCGCCCACCATCCAACAGCCACGCTTCCCCGCAGATTAATGCCGCCCCT
GGTGCCCCGGCGTCCGGCAAGGGAAGCAAGCCTGCCCCCTCCAATCTGGT
GGGAGGACTCCACTCTTTCACCTCCCTCCTCAAGAAGGGGCCGGCGGAGG
GAGGATCGTCATCCGCCTCTTCCACCGCCCCCGCCAGTGGAGGCATGCGC
GTTGTGGAGGTCAAAGCCCTCAAGCGCGCAGAGGCGGCGCGCAAGGCCGA
CATGGTCAAAGAGGAAGAACGTCGGCAACGGAAATTGCTGATGGAGAGAG
CCATTCAGCAGAAAAAAGCCGACGCGACGCGTCTGGAACAAGAGGCGCAC
AAAAAACGGGCGGAGCTGGCGGCAAAACGCAAGGAGCGTGAGGAAAAGTT
GGGAGCAGGGGGAGGGGGAATGCCTACCGCAAACGCTGCTGCCGTATCTG
CTGCCTCCGCCATTTCGGGAATAGGCAAGGCCGGGCCTCAGGCGGGGAAC
GAAGAGCACAAAAAGCCGCGGATCGAGGGGTTAGGAGGGGCTCCTGCGCG
GGATGGACTTCCCAGTGCCACAGCTCCTCTTTCCTCGGTGCCTCGCCCGC
CCAACACAGTGCCCAATCTCAGCAACAGCCGTCCTGGTGCACCCATCGAC
CGCCTCAAGTCGCCCATGCCTGCACCCAAGCAGGCCAACGGCGGCAGCTG
CAATGCTGGGAGCGCGTTGAAGGATATTTCGAATAAACAAGCCAGCAATG
CCTCCGTCCCTGGTGCTTCGGCTGCGGCAGCTGGAGGGGGCAGCAAGGGA
GAGTACGCTTCGAAACCAGGCATGAGCACTTCAGCCTCTCAGCCACATGC
AAATGCAACTTTTGGAAGCCTGGCTGGTAAATTGGGCGTGGGGGAGTCAT
ACGAGATATCGGACAGGGAGGAGTCGAGTGATGACGACTACGACAGCGAT
GGTGGGGGTGGGGGTAAAGGAAAGGCGGCGGCCAAGAGAGTCCCAGATTG
GGCGAAGGGACCAGCGTTGCGGGAGGCGTTGGAGGCCCAATTCAATAAGA
AACACAAGGTGGACCCTGACAGCATCTTCCCAGAGGTGCGCACGTGCGAT
TTGGAGGAAATCTTCAAGTCCTACCAGCAAGGAGGGGCCCAAGCCAAGAA
ACGGGCCTACCGACAGAGGCAATCGACGGGAAACTGGCAGAGGGATGAGT
TGAGCAGCGCGGAGAAGACGCGGTATAGGGAGGACATGGGATATGGGCAC
TCGTAGTGGACATCGCAGGGCGGAGCGACGAGAGCATAGGTCGCAGAGGG
ACCGGTCAGTGTTTTTAAATAGTCGTGCATAGGCGCTCAGTGCGGGGGAC
GTGGTTGAAAAGAGCAGGGCACGCAAAGGTGTGAAGAGCACCAAAGAATC
TGCCGTTTAGGGAGTTGCACTCGAGGCGTCCGATCAAGTAACGTTACATA
CTCCAGTGTTTTCAGCGATGAAACATGAATATCAAACAAAAATGCCCTTC
AAACAAA

protein sequence of rna5980

>rna5980-protein ID=rna5980-protein|Name=rna5980|organism=Nannochloropsis gaditana|type=polypeptide|length=256bp
MQWRARLDQWVRTDISGACMRTWGLDREQECLLALSLKLGRMSTDLKPSP
GWTSTGGKGRPGTQVRGFDVCAWQPCRLSHGHFRSCIVVLIKLPCEYLMT
QPGALPYQQARRMWRCRRGACLFYHSIVYTLFKDQTENLTRQTYYKLSST
KRRGKSVEPEQVASQEVVRRISLPITTEGVSEFRGEGRAWERGNKCGARA
TGISNTCDSQDFSACSTLYQRHMPKTAQDDARRKEETRRQGACTAEGEGK
GRKGTV

mRNA from alignment at CM002467.1:278020..278833-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5980 ID=rna5980|Name=rna5980|organism=Nannochloropsis gaditana|type=mRNA|length=814bp|location=Sequence derived from alignment at CM002467.1:278020..278833- (Nannochloropsis gaditana)
ATGCAGTGGCGAGCGAGGCTAGATCAGTGGGTACGGACGGATATCTCAGG
TGCGTGCATGCGCACGTGGGGACTCGACCGTGAGCAGGAATGCCTCCTTG
CCCTGTCGCTGAAGCTTGGGCGCATGAGCACCGATCTGAAACCAAGCCCT
GGTTGGACCAGCACGGGCGGGAAAGGTCGGCCAGGGACGCAAGTCAGAGG
GTTTGACGTGTGCGCTTGGCAGCCCTGTCGCTTGAGCCATGGCCACTTTC
GGTCCTGTATTGTCGTACTTATTAAGCTACCATGTGAATATCTGATGACC
CAGCCCGGAGCACTTCCATACCAACAAGCCAGAAGAATGTGGAGATGTCG
ACGAGGGGCTTGTCTGTTTTATCACTCAATAGTATACACGTCCTCCCCAC
TGTGTTGGGACTGCATATCGATCCGTCTGAAGGCTTTTCAAAGACCAGAC
GGAGAATTTAACAAGACAGACGTATTATAAGCTTTCATCGACGAAAAGGA
GGGGGAAATCTGTGGAGCCCGAACAAGTCGCATCACAAGAGGTTGTCAGA
AGAATATCTTTGCCTATCACCACCGAGGGCGTGAGCGAATTCCGAGGTGA
AGGTCGAGCCTGGGAACGTGGCAACAAATGTGGAGCCCGTGCGACTGGAA
TTTCCAACACGTGCGACTCACAGGACTTCTCCGCGTGCAGCACTTTGTAT
CAAAGACACATGCCGAAGACCGCTCAAGATGATGCAAGAAGGAAAGAAGA
AACGAGAAGACAAGGGGCATGTACTGCAGAAGGAGAAGGTAAAGGACGCA
AAGGAACTGTCTGA

Coding sequence (CDS) from alignment at CM002467.1:278020..278833-

>rna5980 ID=rna5980|Name=rna5980|organism=Nannochloropsis gaditana|type=CDS|length=1542bp|location=Sequence derived from alignment at CM002467.1:278020..278833- (Nannochloropsis gaditana)
GCTTTTCAAAGACCAGACGGAGAATTTAACAAGACAGACGTATTATAAGC
TTTCATCGACGAAAAGGAGGGGGAAATCTGTGGAGCCCGAACAAGTCGCA
TCACAAGAGGTTGTCAGAAGAATATCTTTGCCTATCACCACCGAGGGCGT
GAGCGAATTCCGAGGTGAAGGTCGAGCCTGGGAACGTGGCAACAAATGTG
GAGCCCGTGCGACTGGAATTTCCAACACGTGCGACTCACAGGACTTCTCC
GCGTGCAGCACTTTGTATCAAAGACACATGCCGAAGACCGCTCAAGATGA
TGCAAGAAGGAAAGAAGAAACGAGAAGACAAGGGGCATGTACTGCAGAAG
GAGAAGGTAAAGGACGCAAAGGAACTGTCTGAATGCAGTGGCGAGCGAGG
CTAGATCAGTGGGTACGGACGGATATCTCAGGTGCGTGCATGCGCACGTG
GGGACTCGACCGTGAGCAGGAATGCCTCCTTGCCCTGTCGCTGAAGCTTG
GGCGCATGAGCACCGATCTGAAACCAAGCCCTGGTTGGACCAGCACGGGC
GGGAAAGGTCGGCCAGGGACGCAAGTCAGAGGGTTTGACGTGTGCGCTTG
GCAGCCCTGTCGCTTGAGCCATGGCCACTTTCGGTCCTGTATTGTCGTAC
TTATTAAGCTACCATGTGAATATCTGATGACCCAGCCCGGAGCACTTCCA
TACCAACAAGCCAGAAGAATGTGGAGATGTCGACGAGGGGCTTGTCTGTT
TTATCACTCAATAGTATACACGCTTTTCAAAGACCAGACGGAGAATTTAA
CAAGACAGACGTATTATAAGCTTTCATCGACGAAAAGGAGGGGGAAATCT
GTGGAGCCCGAACAAGTCGCATCACAAGAGGTTGTCAGAAGAATATCTTT
GCCTATCACCACCGAGGGCGTGAGCGAATTCCGAGGTGAAGGTCGAGCCT
GGGAACGTGGCAACAAATGTGGAGCCCGTGCGACTGGAATTTCCAACACG
TGCGACTCACAGGACTTCTCCGCGTGCAGCACTTTGTATCAAAGACACAT
GCCGAAGACCGCTCAAGATGATGCAAGAAGGAAAGAAGAAACGAGAAGAC
AAGGGGCATGTACTGCAGAAGGAGAAGGTAAAGGACGCAAAGGAACTGTC
TGAATGCAGTGGCGAGCGAGGCTAGATCAGTGGGTACGGACGGATATCTC
AGGTGCGTGCATGCGCACGTGGGGACTCGACCGTGAGCAGGAATGCCTCC
TTGCCCTGTCGCTGAAGCTTGGGCGCATGAGCACCGATCTGAAACCAAGC
CCTGGTTGGACCAGCACGGGCGGGAAAGGTCGGCCAGGGACGCAAGTCAG
AGGGTTTGACGTGTGCGCTTGGCAGCCCTGTCGCTTGAGCCATGGCCACT
TTCGGTCCTGTATTGTCGTACTTATTAAGCTACCATGTGAATATCTGATG
ACCCAGCCCGGAGCACTTCCATACCAACAAGCCAGAAGAATGTGGAGATG
TCGACGAGGGGCTTGTCTGTTTTATCACTCAATAGTATACAC

Synonyms

Publications