rna5977, rna5977 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5977
Unique Name	rna5977
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2415
Alignment location	CM002467.1:262936..264483 -

Link to JBrowse

Properties


Property Name	Value
Product	glycoprotein endo-alpha mannosidase
Orig transcript id	gnl\|cribi\|Naga_100076g22.8819.mrna
Orig protein id	gnl\|cribi\|Naga_100076g22.8819
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:262936..264483 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100076g22	gene5775	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24711.1	cds5962	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5977	rna5977-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:262936..264483-
coding sequence from alignment at CM002467.1:262936..264483-

mRNA sequence

>rna5977 ID=rna5977|Name=rna5977|organism=Nannochloropsis gaditana|type=mRNA|length=2415bp
AGTTCGCACTTGTTCTCTATCTACGTCGTGCCCCGTCATTGGTCTCGTGC
CGCTCCGCTTCTCAGTTATTTGCCTCATAAAACAATCGCGACACGTACCT
CTTCTACAGAGCGCAGCGCATGGTCCTGTACTACGAATGGGGCAGCACCA
CGGAGGCTTTGGCTGATAATGATTTACGCACAGCTGTCCGCAGTGTATTT
GATAGACTCGGCGAGAAGAAAAAGGTTCTTGTCGTGCCTCCAGATTTTAC
ACGATTTAACTCCAAAGCAGGACTATTGACGCAGCACACCTATGAGTATT
ATGGCGAGGCACTAAAAGACATCCTTCCTGCTTTGGGGACGCATGATCCC
GTATCAGGCCACCAGCGTGAGCGCATGTTCGGCGCGGTGCCTGAAAGCCT
CTTCCGCATTCATGACTGGCGCAACGACGTCATCACCATCGGGCATGTAC
CTGCAGACATGGTGCGGGCCGCGAGCGATGGCAAGTTGGACCAACCGTGG
CCGGCGCAACTGAACAAACTGATGGTCGAAGGAGGGCATGATCTCATCCT
CTCTATCGGGCAAGTGGTGCCCCATGAGGTCCTCGGCATGGCGAACTACA
ACAAAAACCTATTTGTGGGAATTGGCGGGGCGGAAGCCATTAATTTAAGC
CATTTCATTGGGGCCGTATACGGTATGGAGAGGATGATGGGCGTGGCTGA
CAATCCCTTGCGGCGCGTCCTGAACCACGCCTCGGAACAATTTCTGGCCG
GGGTCTATCCGCTGATATACATCCTCACCGTCATCGGGCCTTCCGCCGAG
GACCCTCGAGTCCTCCGAACCCGTGGCCTGTACATCGGGGACGATGCGGA
ATGCTTTTTCAAAGCCGCCGCCCTCTCCATTCAGGTAAATTTTACGCTCT
TGGAGAAACCGGTCAGGAAAGTGGTGGCATTCTTGGACAAGGAGGAGTTT
CAATCCACCTGGTTAGGTAACAAGGCCATTTATCGTACCCGGATGTTGAT
TGAGGACGGCGGGGAGCTCCTGGTGCTGGCTCCTGGCGTGAGAAAATTTG
GCGAAGACGAAGCCATCGACGCCCTCATACGGAAATACGGGTACCGCACT
ACTCCCGAGCTGATGGCCTTCCTGGACGGCAACGACGAGCTCCGGGGCAG
CCTCTCCGCCATCGCCCACCTTGTGCACGGTTCCAGCGAAAACCGTTTCA
AAATAACGTACGCCACCGACCCGAGCCAGGGTGGATTAACGAAGGAGGAG
GTGGAGGGAGTGGGGTACGCATGGCGGGACTATCGAGAAGCGATCCGAGA
ATTCGATCCGCAGACGATGACGGCGGGTGTCAATCGTGTCCAAAAGAAAA
GGGAGGAGGGAAGCGAAGGGAGGAAGGAGGAGGAGGACGAGGTGTACTTT
GTGCAGGCCCCTGCGCTAGGTCTGTGGGCGGCGAAGACTAGATTCCAACG
CGAACTAGGACAGGAGGGAAGGAACGAGGGAGGGGCGGAGGGAGGGGCGG
AGGGAGGGGCGGAGGGAGGGGCGGAGGGAGCCACGAGGAAGGTGGGGGAA
GGCCCAAGCGGCGCAGTATCACCGACGCGCGAGCCGCCATCGAAACGCTC
CAAAGGGCTGGACGACGCAGGCAAGGAAGAGGGGTAATAAGGGAGGGAGG
GAAGGGGTGTGTGGAGCCGATCAGCCACCCTAGCGGAGGAATGTCTCTAG
GGAGAGTGAAGGTGAATCTTGCAGGCGGTCTACGCGATAGAACAAACGGG
TAATATAGGGCATGCGAAAGCTTTCAACAACGCACGAACATAAAGGTTCG
ATGGTTCGAAGCGAATCTGCAACCTCAATCTCGCGCACCCGTTGTCCACC
TCTTGGGCCGGCGTGCTACCCTATCTTGCTTACTTCTTTTTTTCCAATGT
ACTTCGTCACTCTAGAGGGAAGGCCGTGTCGCCATGGCGCGTGAAATCGC
CCATCGCAAGTCCTCTCATCCGTCTACTCCAGAGCAGCCCCTCCTACTTC
CTCGTCTGCGAAACGCGTCACCCAGACTCCAAGTATAGGCTCAATCCTGT
TATCATCTCAAACACCATGCGCCTCTTTCTCCTCCTTCTCTTTCCTTTTT
GACAATCGCTGCTCCTCTACCCATGTCTCAATCTTCGCCTTCAATTCTGG
TAACGGCTCCAGATCCGTTAGACTCAACGGCTGACGGTTGAACGGGTCCG
TAGGTTGGTTCAACAAATGTTGTTCGATCGCCGCCCGTTCCATCGCGTAG
CCGGATGTGGGCAGCCGCACGGGGTCTTTCATCAACGTGCAGAGCAAGGG
GTCCAGAAATTCGTCCGGCACCTCCACGCCCAAATCCTCCGCCTCTGCCT
TTTCGGCCGCCGAGGCCACGGCGGTTTCCAGGGCCGTGCATGCCTCAAGC
TGCGCCTCGCTCATG

protein sequence of rna5977

>rna5977-protein ID=rna5977-protein|Name=rna5977|organism=Nannochloropsis gaditana|type=polypeptide|length=436bp
MHCFPGILVIQALFMLLLDLPVSSSHVSTESCRALLRRSITAFFYLWYGV
PAHDNGRYLHWDHSVLPHWTSSTNEKFEAMINKHHNPELGDIHAPFFPAR
GLYSSRDPHVLRHQFREMHDAGITLVALSWWGRPSPTAADSQGVNTDDAL
PIVLAAAEEVRQEKGRGDLYITMHLEPYPGRTISTIKDDLAYIYEHYAHF
SAFLPIFYVYDSYHIPPEEWALLLQPWGKESVRDTPLDGLFIGLWLERDH
GQALVDGGFDGMYTYFASVSFSFGSTLANWDDMAAFCRRQGELGGKGGEK
QVGKRLFLSVLSVGPGYDDEKIRPWNKHNTKPREGLDYMDRMLEAAREAR
PDAISITSYNEWGEGTQIEAAKVGEWRCEGNWEGNSTHLAVRPYVYQEYK
GGDPYLYLNNVKLWRELLWGMAATEDEQTINDKDEF

mRNA from alignment at CM002467.1:262936..264483-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5977 ID=rna5977|Name=rna5977|organism=Nannochloropsis gaditana|type=mRNA|length=1548bp|location=Sequence derived from alignment at CM002467.1:262936..264483- (Nannochloropsis gaditana)
CGTGCAGGACCAACAGCATGCATTGCTTTCCAGGGATTCTGGTGATTCAG
GCATTATTTATGCTGCTTCTTGACCTTCCTGTAAGCTCCTCCCATGTTTC
GACGGAAAGTTGCAGAGCATTGCTTCGGCGCTCCATCACCGCTTTCTTCT
ACCTGTGGTATGGGGTCCCTGCACATGATAACGGAAGATATTTGCATTGG
GACCATTCTGTTCTGCCTCATTGGACATCCTCAACCAATGAAAAATTTGA
AGCCATGATAAACAAGCACCACAATCCTGAATTGGGCGACATACATGCAC
CGTTTTTCCCCGCGCGTGGCTTGTACAGCAGTCGAGACCCGCATGTACTC
CGTCATCAATTTCGGGAGATGCATGATGCAGGAATCACCTTGGTGGCTTT
GTCCTGGTGGGGACGACCATCACCGACGGCAGCGGACTCGCAGGGTGTGA
ATACTGACGATGCCTTGCCTATTGTCCTGGCGGCCGCGGAAGAAGTGCGG
CAAGAAAAGGGAAGAGGTGACCTGTATATTACCATGCACTTAGAGCCCTA
TCCTGGACGAACGATCAGCACCATAAAAGACGATTTGGCCTACATTTATG
AGCATTACGCTCACTTTTCTGCTTTCCTGCCTATCTTTTACGTGTACGAT
TCCTATCATATCCCTCCCGAGGAGTGGGCCTTGTTACTACAGCCCTGGGG
CAAGGAGTCTGTGCGAGATACGCCTTTAGACGGCTTATTCATAGGATTAT
GGCTCGAAAGAGATCATGGCCAGGCGCTTGTCGACGGTGGCTTCGACGGA
ATGTACACTTACTTCGCTTCTGTCTCCTTCTCGTTCGGGTCAACCCTTGC
AAACTGGGATGACATGGCAGCCTTTTGTCGTCGGCAAGGGGAACTAGGAG
GGAAGGGAGGGGAGAAGCAAGTAGGAAAGAGGCTTTTTTTGTCCGTCTTG
AGTGTGGGCCCGGGATATGATGACGAGAAGATTCGGCCGTGGAATAAGCA
CAACACGAAGCCAAGGGAGGGCTTGGACTACATGGATCGCATGCTCGAGG
CAGCGCGTGAAGCCAGGCCTGACGCCATTTCCATCACAAGTTACAATGAA
TGGGGTGAAGGCACGCAGATTGAAGCGGCAAAAGTGGGAGAATGGCGATG
CGAAGGTAACTGGGAAGGAAACTCGACGCACCTAGCGGTGAGACCGTACG
TGTATCAGGAGTATAAAGGGGGGGATCCTTATTTATACCTGAACAACGTC
AAATTGTGGAGAGAACTCTTATGGGGTATGGCTGCGACGGAAGATGAGCA
GACAATAAATGATAAAGATGAATTTTGAAAGAGAAATGCTGATGTCCAAG
CTCATCGGTGCTTTTTGTAAACTATTAAGCAGTCAGCATCTTTGTATCGC
TGAGGGATGACAAGAACTTGAAACTTTTACGCCATTATATGACATGCAAT
TGAAATGTAGAACCGGTTTTACCTCTACAAATGTCTCAGAGCCGAACAGC
CCATCACTATGAAGAGGGCAACAAAAATTCGATCACGTCCAAGCTTCG

Coding sequence (CDS) from alignment at CM002467.1:262936..264483-

>rna5977 ID=rna5977|Name=rna5977|organism=Nannochloropsis gaditana|type=CDS|length=1311bp|location=Sequence derived from alignment at CM002467.1:262936..264483- (Nannochloropsis gaditana)
ATGCATTGCTTTCCAGGGATTCTGGTGATTCAGGCATTATTTATGCTGCT
TCTTGACCTTCCTGTAAGCTCCTCCCATGTTTCGACGGAAAGTTGCAGAG
CATTGCTTCGGCGCTCCATCACCGCTTTCTTCTACCTGTGGTATGGGGTC
CCTGCACATGATAACGGAAGATATTTGCATTGGGACCATTCTGTTCTGCC
TCATTGGACATCCTCAACCAATGAAAAATTTGAAGCCATGATAAACAAGC
ACCACAATCCTGAATTGGGCGACATACATGCACCGTTTTTCCCCGCGCGT
GGCTTGTACAGCAGTCGAGACCCGCATGTACTCCGTCATCAATTTCGGGA
GATGCATGATGCAGGAATCACCTTGGTGGCTTTGTCCTGGTGGGGACGAC
CATCACCGACGGCAGCGGACTCGCAGGGTGTGAATACTGACGATGCCTTG
CCTATTGTCCTGGCGGCCGCGGAAGAAGTGCGGCAAGAAAAGGGAAGAGG
TGACCTGTATATTACCATGCACTTAGAGCCCTATCCTGGACGAACGATCA
GCACCATAAAAGACGATTTGGCCTACATTTATGAGCATTACGCTCACTTT
TCTGCTTTCCTGCCTATCTTTTACGTGTACGATTCCTATCATATCCCTCC
CGAGGAGTGGGCCTTGTTACTACAGCCCTGGGGCAAGGAGTCTGTGCGAG
ATACGCCTTTAGACGGCTTATTCATAGGATTATGGCTCGAAAGAGATCAT
GGCCAGGCGCTTGTCGACGGTGGCTTCGACGGAATGTACACTTACTTCGC
TTCTGTCTCCTTCTCGTTCGGGTCAACCCTTGCAAACTGGGATGACATGG
CAGCCTTTTGTCGTCGGCAAGGGGAACTAGGAGGGAAGGGAGGGGAGAAG
CAAGTAGGAAAGAGGCTTTTTTTGTCCGTCTTGAGTGTGGGCCCGGGATA
TGATGACGAGAAGATTCGGCCGTGGAATAAGCACAACACGAAGCCAAGGG
AGGGCTTGGACTACATGGATCGCATGCTCGAGGCAGCGCGTGAAGCCAGG
CCTGACGCCATTTCCATCACAAGTTACAATGAATGGGGTGAAGGCACGCA
GATTGAAGCGGCAAAAGTGGGAGAATGGCGATGCGAAGGTAACTGGGAAG
GAAACTCGACGCACCTAGCGGTGAGACCGTACGTGTATCAGGAGTATAAA
GGGGGGGATCCTTATTTATACCTGAACAACGTCAAATTGTGGAGAGAACT
CTTATGGGGTATGGCTGCGACGGAAGATGAGCAGACAATAAATGATAAAG
ATGAATTTTGA

Synonyms

Publications