|
|
Properties
| Property Name | Value |
|---|
| Product | protein of unknown function DUF2088 |
| Orig transcript id | gnl|cribi|Naga_100076g23.8802.mrna |
| Orig protein id | gnl|cribi|Naga_100076g23.8802 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002467.1 | supercontig | CM002467.1:259904..262602 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5976 ID=rna5976|Name=rna5976|organism=Nannochloropsis gaditana|type=mRNA|length=1746bp
ATGACACGGATTCTCTTTCCTTCCCCCGCTTTCCCTTTCCCTTCCCCCCA
GGAAATTTCCCTTTTGGAGCCCGACCTCCTCGACAAGGCCATGGTCTTCG
TGGGCGGGGCCGCCGCCTGGTTCTCCTCCCAGGCTTTCGACGCCGCAGCC
ACGCCCGATCTGGCCGCAGCCTTGGCCTTTTGCAGCCGATGCCCGGAGCA
TCTCTTGGAGGACCTCCTCGTCCTGGTCAAATTCGTGGGACGGGCGCACC
CGCAGAGCCTCCTGACGGCGCCGCTGGCGCCTTTTTTTGATTTGTGCATC
CAGGCGTTGACCCGGCCCCAGCTCGTGCACTCCCCCCATTTGCGCGCCAA
AATCGGCGATTTGCTCTACTTGGTCTTCCTCCCCCCCGAGGAGCGGCTCG
ACCACTCGAGCACCTCCGCCGCCGCCACCCGAGGCCACAGCGTCTACACC
TCCTTCCTCCTCAACAACCCCTTGGCCCAGGCATCCCTCGCGCCCGCCCT
CCTCCTCCTTTATGGGGACGTGGAGCACACGGGCTTCTATGACAAGCTCG
AGCATCGCTTCCACATCGCTGCCGTCTTGAAGTTCCTCTGGAGATCTCCC
GAACACCGGCGGACCTTCCGAAGGATCTCCTCCGACACCTCTCAATTCAC
CTCCTTCGCCAACGGCTTGATGAACGAAACCAACGCTCTGGTTGCCTCCG
TGATGGAGAAACTCCCCGAGATCCGATCCGTTCAGCTCCAGATGAAAGAC
AGCCCGGCGTGGGCCGCCATGCCGGAAGAGAGTCGGAACGAAATCATGGA
GCGGCACAACGACAACGAGCGCAGTGTCTCGTCCTCCTTGCTCCTCTGCA
ACGAGACCATCCACATGCTCATGTACCTGACCAGTGACGAGGCAGTCCGC
AAGCCCTTCCTCGCTCCCGCCCTCTCCCCCCGCCTGGCCAACACCCTGCT
TTCGATCGTAGACAAGCTGGTGGGGACGAAAGGGTTGGAGATCAAGGTGG
AAAACCCCGACGCTTTGAATTTCAAACCCAAGGAGATGCTCCGGGAGGTG
GCCCTGACCATCCTCCATTTCGCCGGGGAGCCTGCCTTCCACACCGCCCT
CTCCGAGTCGGGCTACTACCACGAAGGGATGCTTGGCAAAGTCCAGCAGA
CCATGAAACGGGTGGGGGGCATGAGCGAGGCGCAGCTTGAGGCATGCACG
GCCCTGGAAACCGCCGTGGCCTCGGCGGCCGAAAAGGCAGAGGCGGAGGA
TTTGGGCGTGGAGGTGCCGGACGAATTTCTGGACCCCTTGCTCTGCACGT
TGATGAAAGACCCCGTGCGGCTGCCCACATCCGGCTACGCGATGGAACGG
GCGGCGATCGAACAACATTTGTTGAACCAACCTACGGACCCGTTCAACCG
TCAGCCGTTGAGTCTAACGGATCTGGAGCCGTTACCAGAATTGAAGGCGA
AGATTGAGACATGGGTAGAGGAGCAGCGATTGTCAAAAAGGAAAGAGAAG
GAGGAGAAAGAGGCGCATGGTGTTTGAGATGATAACAGGATTGAGCCTAT
ACTTGGAGTCTGGGTGACGCGTTTCGCAGACGAGGAAGTAGGAGGGGCTG
CTCTGGAGTAGACGGATGAGAGGACTTGCGATGGGCGATTTCACGCGCCA
TGGCGACACGGCCTTCCCTCTAGAGTGACGAAGTACATTGGAAAAAAAGA
AGTAAGCAAGATAGGGTAGCACGCCGGCCCAAGAGGTGGACAACGG back to topprotein sequence of rna5976 >rna5976-protein ID=rna5976-protein|Name=rna5976|organism=Nannochloropsis gaditana|type=polypeptide|length=505bp
MVLYYEWGSTTEALADNDLRTAVRSVFDRLGEKKKVLVVPPDFTRFNSKA
GLLTQHTYEYYGEALKDILPALGTHDPVSGHQRERMFGAVPESLFRIHDW
RNDVITIGHVPADMVRAASDGKLDQPWPAQLNKLMVEGGHDLILSIGQVV
PHEVLGMANYNKNLFVGIGGAEAINLSHFIGAVYGMERMMGVADNPLRRV
LNHASEQFLAGVYPLIYILTVIGPSAEDPRVLRTRGLYIGDDAECFFKAA
ALSIQVNFTLLEKPVRKVVAFLDKEEFQSTWLGNKAIYRTRMLIEDGGEL
LVLAPGVRKFGEDEAIDALIRKYGYRTTPELMAFLDGNDELRGSLSAIAH
LVHGSSENRFKITYATDPSQGGLTKEEVEGVGYAWRDYREAIREFDPQTM
TAGVNRVQKKREEGSEGRKEEEDEVYFVQAPALGLWAAKTRFQRELGQEG
RNEGGAEGGAEGGAEGGAEGATRKVGEGPSGAVSPTREPPSKRSKGLDDA
GKEEG back to topmRNA from alignment at CM002467.1:259904..262602- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5976 ID=rna5976|Name=rna5976|organism=Nannochloropsis gaditana|type=mRNA|length=2699bp|location=Sequence derived from alignment at CM002467.1:259904..262602- (Nannochloropsis gaditana)
AGTTCGCACTTGTTCTCTATCTACGTCGTGCCCCGTCATTGGTCTCGTGC
CGCTCCGCTTCTCAGTTATTTGCCTCATAAAACAATCGCGACACGTACCT
CTTCTACAGAGCGCAGCGCATGGTCCTGTACTACGAATGGGGCAGCACCA
CGGAGGCTTTGGCTGATAATGATTTACGCACAGCTGTCCGCAGTGTATTT
GATAGACTCGGCGAGAAGAAAAAGGTTCTTGTCGTGCCTCCAGATTTTAC
ACGATTTAACTCCAAAGCAGGACTATTGACGCAGCACACCTATGAGTATT
ATGGCGAGGCACTAAAAGACATCCTTCCTGCTTTGGGGACGCATGATCCC
GTATCAGGCCACCAGCGTGAGCGCATGTTCGGCGCGGTGCCTGAAAGCCT
CTTCCGCATTCATGACTGGCGCAACGACGTCATCACCATCGGGCATGTAC
CTGCAGACATGGTGCGGGCCGCGAGCGATGGCAAGTTGGACCAACCGTGG
CCGGCGCAACTGAACAAACTGATGGTCGAAGGAGGGCATGATCTCATCCT
CTCTATCGGGCAAGTGGTGCCCCATGAGGTCCTCGGCATGGCGAACTACA
ACAAAAACCTATTTGTGGGAATTGGCGGGGCGGAAGCCATTAATTTAAGC
CATTTCATTGGGGCCGTATACGGTATGGAGAGGATGATGGGCGTGGCTGA
CAATCCCTTGCGGCGCGTCCTGAACCACGCCTCGGAACAATTTCTGGCCG
GGGTCTATCCGCTGATATACATCCTCACCGTCATCGGGCCTTCCGCCGAG
GACCCTCGAGTCCTCCGAACCCGTGGCCTGTACATCGGGGACGATGCGGA
ATGCTTTTTCAAAGCCGCCGCCCTCTCCATTCAGGTAAATTTTACGCTCT
TGGAGAAACCGGTCAGGAAAGTGGTGGCATTCTTGGACAAGGAGGAGTTT
CAATCCACCTGGTTAGGTAACAAGGCCATTTATCGTACCCGGATGTTGAT
TGAGGACGGCGGGGAGCTCCTGGTGCTGGCTCCTGGCGTGAGAAAATTTG
GCGAAGACGAAGCCATCGACGCCCTCATACGGTGAGTGCGGTGGCCGGGG
GCCGTAAAAGGCGTCTCGAGGGCTCGTGGAGGGAAGGACCGCCAGAGCTA
GCGTCAAGTGGCATTGCGTGTAGTCTCTAGTACCCTGATGCGAAACGGCC
AAGCTGGGGATGGTATTGGCCTCGTTGCTCTATTTTCCACCGCCGGGGCA
GGACACCTTCTGCTCGATGTTACTCCCTTTTTCGGAATACAAAATTTATC
TGGATCAAAATCTGACTCAATTTTTCCCATGCCCCCCTGTACTGTTTCCG
TTTCTTTCTCTCAAGGAAATACGGGTACCGCACTACTCCCGAGCTGATGG
CCTTCCTGGACGGCAACGACGAGCTCCGGGGCAGCCTCTCCGCCATCGCC
CACCTTGTGCACGGTTCCAGCGAAAACCGTTTCAAAATAACGTACGCCAC
CGACCCGAGCCAGGGTGGATTAACGAAGGAGGAGGTGGAGGGAGTGGGGT
ACGCATGGCGGGACTATCGAGAAGCGATCCGAGAATTCGATCCGCAGACG
ATGACGGCGGGTGTCAATCGTGTCCAAAAGAAAAGGGAGGAGGGAAGCGA
AGGGAGGAAGGAGGAGGAGGACGAGGTGTACTTTGTGCAGGCCCCTGCGC
TAGGTCTGTGGGCGGCGAAGACTAGATTCCAACGCGAACTAGGACAGGAG
GGAAGGAACGAGGGAGGGGCGGAGGGAGGGGCGGAGGGAGGGGCGGAGGG
AGGGGCGGAGGGAGCCACGAGGAAGGTGGGGGAAGGCCCAAGCGGCGCAG
TATCACCGACGCGCGAGCCGCCATCGAAACGCTCCAAAGGGCTGGACGAC
GCAGGCAAGGAAGAGGGGTAATAAGGGAGGGAGGGAAGGGGTGTGTGGAG
CCGATCAGCCACCCTAGCGGAGGAATGTCTCTAGGGAGAGTGAAGGTGAA
TCTTGCAGGCGGTCTACGCGATAGAACAAACGGGTAATATAGGGCATGCG
AAAGCTTTCAACAACGCACGAACATAAAGGTTCGATGGTTCGAAGCGAAT
CTGCAACCTCAATCTCGCGCACCCGTTGTCCACCTCTTGGGCCGGCGTGC
TACCCTATCTTGCTTACTTCTTTTTTTCCAATGTACTTCGTCACTCTAGA
GGGAAGGCCGTGTCGCCATGGCGCGTGAAATCGCCCATCGCAAGTCCTCT
CATCCGTCTACTCCAGAGCAGCCCCTCCTACTTCCTCGTCTGCGAAACGC
GTCACCCAGACTCCAAGTATAGGCTCAATCCTGTTATCATCTCAAACACC
ATGCGCCTCTTTCTCCTCCTTCTCTTTCCTTTTTGACAATCGCTGCTCCT
CTACCCATGTCTCAATCTTCGCCTTCAATTCTGGTAACGGCTCCAGATCC
GTTAGACTCAACGGCTGACGGTTGAACGGGTCCGTAGGTTGGTTCAACAA
ATGTTGTTCGATCGCCGCCCGTTCCATCGCGTAGCCGGATGTGGGCAGCC
GCACGGGGTCTTTCATCAACGTGCAGAGCAAGGGGTCCAGAAATTCGTCC
GGCACCTCCACGCCCAAATCCTCCGCCTCTGCCTTTTCGGCCGCCGAGGC
CACGGCGGTTTCCAGGGCCGTGCATGCCTCAAGCTGCGCCTCGCTCATG back to topCoding sequence (CDS) from alignment at CM002467.1:259904..262602- >rna5976 ID=rna5976|Name=rna5976|organism=Nannochloropsis gaditana|type=CDS|length=3036bp|location=Sequence derived from alignment at CM002467.1:259904..262602- (Nannochloropsis gaditana)
GAAATACGGGTACCGCACTACTCCCGAGCTGATGGCCTTCCTGGACGGCA
ACGACGAGCTCCGGGGCAGCCTCTCCGCCATCGCCCACCTTGTGCACGGT
TCCAGCGAAAACCGTTTCAAAATAACGTACGCCACCGACCCGAGCCAGGG
TGGATTAACGAAGGAGGAGGTGGAGGGAGTGGGGTACGCATGGCGGGACT
ATCGAGAAGCGATCCGAGAATTCGATCCGCAGACGATGACGGCGGGTGTC
AATCGTGTCCAAAAGAAAAGGGAGGAGGGAAGCGAAGGGAGGAAGGAGGA
GGAGGACGAGGTGTACTTTGTGCAGGCCCCTGCGCTAGGTCTGTGGGCGG
CGAAGACTAGATTCCAACGCGAACTAGGACAGGAGGGAAGGAACGAGGGA
GGGGCGGAGGGAGGGGCGGAGGGAGGGGCGGAGGGAGGGGCGGAGGGAGC
CACGAGGAAGGTGGGGGAAGGCCCAAGCGGCGCAGTATCACCGACGCGCG
AGCCGCCATCGAAACGCTCCAAAGGGCTGGACGACGCAGGCAAGGAAGAG
GGGTAAATGGTCCTGTACTACGAATGGGGCAGCACCACGGAGGCTTTGGC
TGATAATGATTTACGCACAGCTGTCCGCAGTGTATTTGATAGACTCGGCG
AGAAGAAAAAGGTTCTTGTCGTGCCTCCAGATTTTACACGATTTAACTCC
AAAGCAGGACTATTGACGCAGCACACCTATGAGTATTATGGCGAGGCACT
AAAAGACATCCTTCCTGCTTTGGGGACGCATGATCCCGTATCAGGCCACC
AGCGTGAGCGCATGTTCGGCGCGGTGCCTGAAAGCCTCTTCCGCATTCAT
GACTGGCGCAACGACGTCATCACCATCGGGCATGTACCTGCAGACATGGT
GCGGGCCGCGAGCGATGGCAAGTTGGACCAACCGTGGCCGGCGCAACTGA
ACAAACTGATGGTCGAAGGAGGGCATGATCTCATCCTCTCTATCGGGCAA
GTGGTGCCCCATGAGGTCCTCGGCATGGCGAACTACAACAAAAACCTATT
TGTGGGAATTGGCGGGGCGGAAGCCATTAATTTAAGCCATTTCATTGGGG
CCGTATACGGTATGGAGAGGATGATGGGCGTGGCTGACAATCCCTTGCGG
CGCGTCCTGAACCACGCCTCGGAACAATTTCTGGCCGGGGTCTATCCGCT
GATATACATCCTCACCGTCATCGGGCCTTCCGCCGAGGACCCTCGAGTCC
TCCGAACCCGTGGCCTGTACATCGGGGACGATGCGGAATGCTTTTTCAAA
GCCGCCGCCCTCTCCATTCAGGTAAATTTTACGCTCTTGGAGAAACCGGT
CAGGAAAGTGGTGGCATTCTTGGACAAGGAGGAGTTTCAATCCACCTGGT
TAGGTAACAAGGCCATTTATCGTACCCGGATGTTGATTGAGGACGGCGGG
GAGCTCCTGGTGCTGGCTCCTGGCGTGAGAAAATTTGGCGAAGACGAAGC
CATCGACGCCCTCATACGGAAATACGGGTACCGCACTACTCCCGAGCTGA
TGGCCTTCCTGGACGGCAACGACGAGCTCCGGGGCAGCCTCTCCGCCATC
GCCCACCTTGTGCACGGTTCCAGCGAAAACCGTTTCAAAATAACGTACGC
CACCGACCCGAGCCAGGGTGGATTAACGAAGGAGGAGGTGGAGGGAGTGG
GGTACGCATGGCGGGACTATCGAGAAGCGATCCGAGAATTCGATCCGCAG
ACGATGACGGCGGGTGTCAATCGTGTCCAAAAGAAAAGGGAGGAGGGAAG
CGAAGGGAGGAAGGAGGAGGAGGACGAGGTGTACTTTGTGCAGGCCCCTG
CGCTAGGTCTGTGGGCGGCGAAGACTAGATTCCAACGCGAACTAGGACAG
GAGGGAAGGAACGAGGGAGGGGCGGAGGGAGGGGCGGAGGGAGGGGCGGA
GGGAGGGGCGGAGGGAGCCACGAGGAAGGTGGGGGAAGGCCCAAGCGGCG
CAGTATCACCGACGCGCGAGCCGCCATCGAAACGCTCCAAAGGGCTGGAC
GACGCAGGCAAGGAAGAGGGGTAAATGGTCCTGTACTACGAATGGGGCAG
CACCACGGAGGCTTTGGCTGATAATGATTTACGCACAGCTGTCCGCAGTG
TATTTGATAGACTCGGCGAGAAGAAAAAGGTTCTTGTCGTGCCTCCAGAT
TTTACACGATTTAACTCCAAAGCAGGACTATTGACGCAGCACACCTATGA
GTATTATGGCGAGGCACTAAAAGACATCCTTCCTGCTTTGGGGACGCATG
ATCCCGTATCAGGCCACCAGCGTGAGCGCATGTTCGGCGCGGTGCCTGAA
AGCCTCTTCCGCATTCATGACTGGCGCAACGACGTCATCACCATCGGGCA
TGTACCTGCAGACATGGTGCGGGCCGCGAGCGATGGCAAGTTGGACCAAC
CGTGGCCGGCGCAACTGAACAAACTGATGGTCGAAGGAGGGCATGATCTC
ATCCTCTCTATCGGGCAAGTGGTGCCCCATGAGGTCCTCGGCATGGCGAA
CTACAACAAAAACCTATTTGTGGGAATTGGCGGGGCGGAAGCCATTAATT
TAAGCCATTTCATTGGGGCCGTATACGGTATGGAGAGGATGATGGGCGTG
GCTGACAATCCCTTGCGGCGCGTCCTGAACCACGCCTCGGAACAATTTCT
GGCCGGGGTCTATCCGCTGATATACATCCTCACCGTCATCGGGCCTTCCG
CCGAGGACCCTCGAGTCCTCCGAACCCGTGGCCTGTACATCGGGGACGAT
GCGGAATGCTTTTTCAAAGCCGCCGCCCTCTCCATTCAGGTAAATTTTAC
GCTCTTGGAGAAACCGGTCAGGAAAGTGGTGGCATTCTTGGACAAGGAGG
AGTTTCAATCCACCTGGTTAGGTAACAAGGCCATTTATCGTACCCGGATG
TTGATTGAGGACGGCGGGGAGCTCCTGGTGCTGGCTCCTGGCGTGAGAAA
ATTTGGCGAAGACGAAGCCATCGACGCCCTCATACG back to top
|