rna5961, rna5961 (mRNA) Nannochloropsis gaditana

Overview
Namerna5961
Unique Namerna5961
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1509
Alignment locationCM002467.1:212967..214130 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100180g1.4035.mrna
Orig protein idgnl|cribi|Naga_100180g1.4035
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:212967..214130 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100180g1gene5759Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24722.1cds5946Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5961rna5961-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5961 ID=rna5961|Name=rna5961|organism=Nannochloropsis gaditana|type=mRNA|length=1509bp
CACCAGGCAAATTACAGGGCAGAATCAGAAGTTCTTGAATTTTCGTACTG
ATACGGAGATCATCATCGTCCGAGCAAAGTCTTGACGTGGTCAAGTGCAG
GTAAACGCACCCTTCCACTCCATGTCCGGGAATGACAACAAAACAGCCAC
TGGAAAGCAGGTCCGTCAGCTCCTTCATGAAGCAGTCCATGATATTGCAG
AAAATGAGTTCGAAAAGCTGTGTGACCCCAAAAAATGCATCGTTCTTTTC
TCGGGAGGAGTAGATTCGTCTATCTCCCTCCATCTAGCAGCCTCCTTGTT
GGGAGTACGACATGCAATTACCGTGCTTGTGCAAGATACTCCTGCCAATG
ACGCGCCCTGGGCCGAAGAAACCCCCAATCTTTATTCTGATATCGACCAT
GTCATATTGCGTCCTACATTGGCCGAGCTTTTGGAGAAAGATATGCCTTT
CTTGGTCGAAAGCATTCAGTCGTTTGATGGGATGGCGCTAAGAAACTCAG
TTTGCGCTACGCACGCCTTGCGCCACGCAGCTTCGTTGGGCTTCACATAT
GTCTTGACAGGAGACGCAGCCGACGAGCTGATGGGTGGGTACCGGTTCAC
GCATCGGTACGATGCAAAGGCCTGGTCAGAGCAACGCGCCACTATGGTCG
CGCGCATGCATTTTGACAGCATTCAAGTAGGGGCAGCCCTGGGAATGCGG
GTCACGTCTCCGTACCTTTACAAGCCCTTCGTTGACTTTTGTCTGCAGCA
TCTCCAGAAAGCAGACTGCATCGGTCCCTTTGCCTTGCGCGTCGCCCCCA
CCGCACCTCTGGAGGACGGGGTGGTAACGGGCAAGCTCCCGTTGCGTCGC
GCCTTTCCAGAGCTCTTGTCATCCTCCCGACGGAAAGATCCACAAGAAGT
CGGGTGTGGGACAACCCTGCTCGGAGCGGCTCCCTGGGCCACGCCTCCTC
GACCAGGGTATTTCGATTCGCGGATCAAAGACGAGGAATTCGATCGGGAG
AAGGAGCGGGTGCTGGCCGCCTATGCCGTCACCCTCCGAGACAAAGAACA
CCTGGCCTATTTCCTTGTCTTTGAAGAGGTATTCGGGAGGCGCGAGGATG
CCAGAGCACTGAAGGAGGTGCGTCCAGAAAGGCGCTTGGAAGTTCCAGGG
AAATCGCAGAATGCGGATGACCCGTGTCCTGCCTGCCGCTTCGCTTTGGG
TGCGCCCACGCAGACCTTTTGCCTGACTTGCGGGCACTACGACGAGGCTT
TACGATTTCGACATGCTGGTACAAAGGGCCTGAAGGGAGATGTTTAAGAA
AATGCTTGGCCAGGATAGGTCGAGGAAAATGGAGGACGCAGGGATGCTTG
ATTGATGAACGAGAATGCAATCTCTTTATGTCTTTGCGCATTCATTTCAG
TTCACAGACTATTTCTTTTCAAGGACAAGAGTAGGAACACCTGGTATGCA
GTGTCAGTCATCATCTTCATGTCAGTAACGCACCATTTCCGATCTCATCC
CCTCCAATC
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protein sequence of rna5961

>rna5961-protein ID=rna5961-protein|Name=rna5961|organism=Nannochloropsis gaditana|type=polypeptide|length=148bp
MSLNFPVLLIVPSLPLPTLPPSRRIFIQTSAVSFSGLGGFLKRVVSTLLA
PLAGSSPPSFTSTFEKEFGTAHVPFLEAPPPTRLGAGSCLLPLPHRVPAV
FLPPGRKASQSFLQDLDCALPPSLRGCRLCLVGDPPPPPHPTGPPGRN
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mRNA from alignment at CM002467.1:212967..214130-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5961 ID=rna5961|Name=rna5961|organism=Nannochloropsis gaditana|type=mRNA|length=1164bp|location=Sequence derived from alignment at CM002467.1:212967..214130- (Nannochloropsis gaditana)
CGAAGCATCCCTGCCCACCGTCCTGCGTATCGCCCCATACCCACCACTGG
AGTCCATCTTTTCATGAAAGCAGACAAAAACCAATCATGTTACACTTGCA
AAGTCGATTCAGCACTCTAGTTCTTTCTCTCGTATCCGAAGCAAGACACA
GGGGACCGAAAACAGGAAGAGACCGCGTGATATCATCAGATACTTTGTGG
ACGGAGACGGGGGATGGGGCTCACACGGAGGAGCATTAGTGGAACAAATG
TCACACAAAGCACTCCATTCACATACATTAGAAAAAATGTCTGCCATCGG
CGCTTTGGACCCAAGGTTTTCAGGTTTTCGATGGCCGTACTTACGCTTCT
GGCCACCTCCCCCCATGCCTGTGCCGGGAGCGTCGTAGGGGGTGCCCGGA
GACTGGGTAGGTCATAGCCTGTCTTTCCCATCCATCTTCCTTTCCACAAT
CCTTGTATAACAGGCTCCTCGTTTCCATTCACAGGTATCCAGCTACCGCG
TCTTGGATCCAGCACCCTTCAAACGCCACCGTCACTACCCTGTGCACCCG
CCCCTCAACCTCCTCCCTCGCTGCTCCTCAGCCGCCGAGGGGGAGGGGGA
AAGAAAGAGGGCTTGACAAGCATCATGTAAGCTTGCATCAGCAAATCTAC
CTGTGTAAATTTTTTCCTCGTCTCGGATTCGTGTGCGTGTGTGTGTATGT
CCCTAAACTTTCCTGTCCTTCTCATCGTTCCCTCCCTTCCTCTCCCCACG
CTCCCTCCATCCCGCCGTATTTTTATTCAAACCTCCGCCGTCAGTTTTTC
CGGGCTCGGCGGCTTTCTCAAACGCGTCGTCTCTACCCTCCTGGCTCCCC
TTGCCGGGTCTTCCCCTCCCTCTTTCACCTCCACCTTCGAGAAGGAATTT
GGGACGGCCCATGTCCCTTTCCTCGAAGCCCCTCCTCCCACTCGCCTTGG
CGCAGGCTCGTGCCTCTTGCCGCTTCCTCATCGTGTACCTGCCGTCTTCC
TCCCCCCGGGACGAAAAGCGTCACAAAGCTTTTTGCAGGACCTTGACTGC
GCCCTCCCTCCATCGCTTCGCGGCTGCCGCCTTTGTCTTGTGGGCGACCC
CCCCCCGCCTCCGCACCCTACAGGACCGCCGGGAAGGAATTGAAAGCCCG
GCATTTCCCTTACT
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Coding sequence (CDS) from alignment at CM002467.1:212967..214130-

>rna5961 ID=rna5961|Name=rna5961|organism=Nannochloropsis gaditana|type=CDS|length=447bp|location=Sequence derived from alignment at CM002467.1:212967..214130- (Nannochloropsis gaditana)
ATGTCCCTAAACTTTCCTGTCCTTCTCATCGTTCCCTCCCTTCCTCTCCC
CACGCTCCCTCCATCCCGCCGTATTTTTATTCAAACCTCCGCCGTCAGTT
TTTCCGGGCTCGGCGGCTTTCTCAAACGCGTCGTCTCTACCCTCCTGGCT
CCCCTTGCCGGGTCTTCCCCTCCCTCTTTCACCTCCACCTTCGAGAAGGA
ATTTGGGACGGCCCATGTCCCTTTCCTCGAAGCCCCTCCTCCCACTCGCC
TTGGCGCAGGCTCGTGCCTCTTGCCGCTTCCTCATCGTGTACCTGCCGTC
TTCCTCCCCCCGGGACGAAAAGCGTCACAAAGCTTTTTGCAGGACCTTGA
CTGCGCCCTCCCTCCATCGCTTCGCGGCTGCCGCCTTTGTCTTGTGGGCG
ACCCCCCCCCGCCTCCGCACCCTACAGGACCGCCGGGAAGGAATTGA
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Synonyms
Publications