rna5957, rna5957 (mRNA) Nannochloropsis gaditana

Overview
Namerna5957
Unique Namerna5957
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length321
Alignment locationCM002467.1:202058..203238 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100459g5.448.mrna
Orig protein idgnl|cribi|Naga_100459g5.448
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:202058..203238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100459g5gene5754Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5957rna5957-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24728.1cds5942Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5957 ID=rna5957|Name=rna5957|organism=Nannochloropsis gaditana|type=mRNA|length=321bp
ATGCACTCCAGGGCAGCCAGGGCCGCGGCTGAGTTCGGGCGGGGGATACG
GAGGGAGGGAGGAAAGGAGAAGGGTGAAACCTCCCCTGCTTCCTCCTCTT
CCTCCTTGTCGTGGATGGAGAGTGTGGGGGGGAGGGACGAGGTGGAGGAA
GAGGAGGAAGAGGAGGGTGGAAGGGAGGGCGGGCGGGAGGGCGAGCGGGA
GTGCGGGCGGGAGGAGGCGGGGGAAGGAGAGGACCGTCACAGCTGGCCTT
TCGAGATGGACTTGGAGCCTCGTCACTCCGCTTTAGGAAGCGACGCAGGG
GGGGGGCATGGACCGAAATGA
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protein sequence of rna5957

>rna5957-protein ID=rna5957-protein|Name=rna5957|organism=Nannochloropsis gaditana|type=polypeptide|length=280bp
AAGQTRRHRDRQDRALECEQRNGSIALARPKGGRSRQAAHKHEEAGAETR
SLLFQKVLPPLPCLPTYHQRHDQAVETVDVVWREGGTKGGREGGQEKGKV
PMWGLPLSRAISSPDFFSEAKRSLWEGKGVGGGEGGGERGTGHNGFRTGT
SQKVKTPLPPYIPPSLPPLPPVLKERPHSLSESGRPARRETGKEDGQDGG
REGGRDGGWSERVEGAGKLNLGGNVMMERKNRVLRESEAFRKAYFHYVEV
LLRDVVRRKREARQRRREEEEEGGGESVVP
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mRNA from alignment at CM002467.1:202058..203238+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5957 ID=rna5957|Name=rna5957|organism=Nannochloropsis gaditana|type=mRNA|length=1181bp|location=Sequence derived from alignment at CM002467.1:202058..203238+ (Nannochloropsis gaditana)
ATGCAGCCGGGCAGACACGTCGCCACCGGGACCGCCAGGACCGGGCCCTA
GAGTGTGAGCAGCGGAATGGAAGCATTGCCCTGGCTCGTCCCAAGGGGGG
GCGCTCGCGTCAGGCTGCCCACAAGCACGAGGAGGCTGGCGCTGAGaccc
gctctctccttttccagaaggtccttcctcccttgccctgcctcccgacC
TACCACCAGCGTCACGACCAAGCTGTGGAGACGGTGGACGtggtgtggag
ggagggagggacgaaaggagggagggagggagggcaggagaaggggaaag
tgCCCATGTGGGGTCTTCCGCTCTCccgcgccatttcctcccccgactTC
TTCTCCGAAGCCAAGCGAAGTCTGTGGGAAGGCaaaggagtgggaggggg
ggagggagggggagagagagggacgggtcACAATGGCTTTCGGACCGGCA
CGAGCCAGAAGGTCAAGACACCTCTGCCTCCCtacattcctccctctctt
cctcccctcccaccggtACTGAAAGAACGACCGCACAGTCTCTCCGAAAG
TGGCCGCCCAGCGAGGAGAGaaacaggaaaggaggatgggcaggacggag
gaagggaaggaggaagggatggagggtggagtgagagggtggagggagcc
ggTAAATTGAATTTGGGGGGAAACGTgatgatggagaggaagaacagGGT
CCTGCGCGAGTCAGAGGCGTTTCGAAAAGCCTACTTTCACTACGTGGAGG
TTCTCCTTCGTGATGTCGttaggaggaagcgggaggctaggcagaggaga
agggaggaggaagaggaaggaggaggagagagcgtggTCCCATGAAGATT
AGTGTACACAGGCAGCAACAATGTTGAGGGGGACTTGTCAGGGGTAGATA
GAAATAATTGTGCATCTTAGTCTCTTCTGGGGTCGGTTGGGCCTGGGAGC
ACGCAAAGAATCGCAATGGCAGCGTAACCGAGCCGCAGCAGTAATAGAAT
GGACAGACGCGACAGCAGTCACGGAACCTTACAGAAGACAAAATTTGGCA
TTGACGTGAGAATGATTCAATGTTATGCGACAGAAATCATGGCGTAAATA
AATGGAGCCTCCACTCATATGGCCTtaaaaagaggaagataTTACAGATG
TACCTGCACTTTGAAAGTATGCCCCGGTCGC
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Coding sequence (CDS) from alignment at CM002467.1:202058..203238+

>rna5957 ID=rna5957|Name=rna5957|organism=Nannochloropsis gaditana|type=CDS|length=843bp|location=Sequence derived from alignment at CM002467.1:202058..203238+ (Nannochloropsis gaditana)
GCAGCCGGGCAGACACGTCGCCACCGGGACCGCCAGGACCGGGCCCTAGA
GTGTGAGCAGCGGAATGGAAGCATTGCCCTGGCTCGTCCCAAGGGGGGGC
GCTCGCGTCAGGCTGCCCACAAGCACGAGGAGGCTGGCGCTGAGacccgc
tctctccttttccagaaggtccttcctcccttgccctgcctcccgacCTA
CCACCAGCGTCACGACCAAGCTGTGGAGACGGTGGACGtggtgtggaggg
agggagggacgaaaggagggagggagggagggcaggagaaggggaaagtg
CCCATGTGGGGTCTTCCGCTCTCccgcgccatttcctcccccgactTCTT
CTCCGAAGCCAAGCGAAGTCTGTGGGAAGGCaaaggagtgggaggggggg
agggagggggagagagagggacgggtcACAATGGCTTTCGGACCGGCACG
AGCCAGAAGGTCAAGACACCTCTGCCTCCCtacattcctccctctcttcc
tcccctcccaccggtACTGAAAGAACGACCGCACAGTCTCTCCGAAAGTG
GCCGCCCAGCGAGGAGAGaaacaggaaaggaggatgggcaggacggagga
agggaaggaggaagggatggagggtggagtgagagggtggagggagccgg
TAAATTGAATTTGGGGGGAAACGTgatgatggagaggaagaacagGGTCC
TGCGCGAGTCAGAGGCGTTTCGAAAAGCCTACTTTCACTACGTGGAGGTT
CTCCTTCGTGATGTCGttaggaggaagcgggaggctaggcagaggagaag
ggaggaggaagaggaaggaggaggagagagcgtggTCCCATGA
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Synonyms
Publications