|
|
Properties
| Property Name | Value |
|---|
| Product | beta- aspartyl asparaginyl family |
| Orig transcript id | gnl|cribi|Naga_100272g1.10156.mrna |
| Orig protein id | gnl|cribi|Naga_100272g1.10156 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002467.1 | supercontig | CM002467.1:181714..184676 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5948 ID=rna5948|Name=rna5948|organism=Nannochloropsis gaditana|type=mRNA|length=937bp
TCTGTCACAGTGTCCTTTTCACGCCGTACAATGCCACCGTACTTTCCTAC
GCGTGCCCTTCATTCATTTGTAGGTTTGTGTGCTCGCCATGCGTATGCAT
AGACGCACATGGATTGACCTCGATATCTGAGCTCGCTAGCCTCCCCTCCC
TTCCTTCTCTGGATACTCCCATTTTCTCTTATCTGTTACATGCTTCCAAA
ACCCCATGCACGCACTTCGAAACCCATGAAACAGGAAGCTTTTCAAGAAT
TCTCAAACAGGACCAAGATGGTGGAAGAGCACGAGCCTGAGAACCCGAAA
GTCGAGGAGGAAGGAAGCGAGGAGGAGGAGGAGGAGGAGGAGTCTGAGGA
GGAGGGGGAGGAGACAGGGGCGGGCCGGGGGGGGAAGCAAAGTCGCAGCG
AGAAAAAGAGCCGTAAGGCTGTCCAGAAATTGGGCATGAAGCCTTTACCG
GGCATCGCCCGGGTGACGGTGAAGAAGAGTAAGAACATTCTCTTCGTGAT
CGGACAGCCGGACGTGTACAAATCCCCCTTTTCGGACACCTACATCGTCT
TTGGCGAGGCTAAGTTGGAAGACTTGGGGGCCCAGGCTCAAAGCGCGGCC
GCGGCGCAATTTTCCCGGGAGCCCACCGGCATGCCTCAGGGGCTGGGCGG
AGGAGGGGGAGGAGGGGCGGGGGCGCCGGTGGTGGAGGAGGAGGGGGAGG
TGGATGAGACAGGGGTGGAGGCGAAGGATATTGAGCTGGTGATGAGCCAG
GCGGCGTGCTCCCGGGCGCGGGCGGTGGGCGCTCTGAAGAAAAACGACGG
GGACATTGTGAACGCGATCATGGAGCTGACCGTGTAGGAGTGAGGGAGGG
AGGGTGTGCGGGATCGAGGGAGGGATCGAGGGAGGGATCGAGGGAGGGCT
AGGGGAAGCGAAGGAAACAAAAAGAAACTTTGAGGGA back to topprotein sequence of rna5948 >rna5948-protein ID=rna5948-protein|Name=rna5948|organism=Nannochloropsis gaditana|type=polypeptide|length=321bp
MKLFSILMLAATASAFLPPLPPSTPTFRPSTSLGMSSLLMDENAVADRIK
DGLLIRYMPEDIHRVLASWNRMVENQPFEDKEAQRFATSYIEGLEAKPWH
DVSKFPWLQKLEENAGVVQQELKEALAMGEMLEKTGNNVWVGALTSEGAA
YGPDWKTLVLQDRAWDETNARIFPKTVQLLREIGAPTVEVFFAKQKGKTG
IQPHSDGCNFVLTAHLGVDVPEGECWIKVGGQKEEWRNGKALAFDTHYFH
ETGNASDKDRYVLLMRFWHPGVTPKEREALQYVFDALDGPQAQTDMDFEY
LNGLAEAQLASRRVEEVEEDG back to topmRNA from alignment at CM002467.1:181714..184676- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5948 ID=rna5948|Name=rna5948|organism=Nannochloropsis gaditana|type=mRNA|length=2963bp|location=Sequence derived from alignment at CM002467.1:181714..184676- (Nannochloropsis gaditana)
TCGACACACCGTATTCACCCGTTCAACCCCATGATGAACGGAAAATAATC
CCGATACAGGCATACAGGCTGCCCGTCCGTCCTTCGATTCCCTTGGTGCG
GCGCGATGAAGCTTTTTTCCATCCTTATGCTCGCGGCCACGGCTTCTGCC
TTCCTCCCTCCCCTTCCTCCCTCGACCCCAACCTTCCGGCCATCCACGTC
CTTGGGCATGTCCTCCTTGCTCATGGACGAAAACGCGGTGGCAGACCGCA
TTAAGGACGGACTGCTCATTCGCTACATGCCCGAGGTGATGATATGATGG
GGGAGAGGGGAGGGATTTGGAATGGCTTAAAGAGATGCTTTCTATCTGTG
ATCATCTAGCCTGCGTGCAAGCTAACTGTCGCCGCGCATCACGGTTCGAC
AGCACGAGGTGCTCGTATCGTAAAGGTGTCTGTGTTTTCCAACCCCCCTC
GGCATGACACATGCGTTGTGTCCACGGAGGCCTGCTATGAGGGTCCTTCT
CTACCTCCTCCCGGGTGTATATCCCTGGCCCATGGCCCGCTCCATGCAAG
CAACATGTAAAATATTCCTGCTCCACTCAAACTTTTGCATTATTTGACTC
GAGTGTGCATCAATCGTGAATAGTGTAAGCTACAGGTATATGGCCATATG
GGTGAGGCGTGTGAGCTTCGCCTCTTTTGAGAGCAGGCAGTGTGTTGCTA
TTTCCCTGTCCCTCCACTTTTATCTGCATGTTTTTCCTTACAATGTCCTT
CCTGATGGTGCGTGGTGCCGAAAGGAAGCCGCTGTGATGCAGCGCGGACC
GAGTCGGGCATTGCCCTCTTACTCGAGCCCGCTCCTAGTGAAAGTACAGC
TAGAATGGACTCTTTCCCCGTCTTTTCCTGATAAGCTTCCGGTCCTATGG
CCCATACCGGACGATCAACTGCGCGATGGGGACATGTTAGGATGGATCCG
TTGCCTGGCCGGCGATGCGTTCCCTAATGTGTGGAGTGTAGCGGTGCCAG
GGCTTGAGCACAAGAAGAGGGGGCTGGACTTGGCGGGGGGCGTCTCCGCG
GGGCCCGCTCCCTCCCGGCACATGCCAGTCTCGTCCATGTCACAAGTCTT
TGTTTTTCTTTTTGAGATATGTGATTCATTTTTAGTTAGATTTCTGCGGC
TTACAATTTGTTTTCAACGCGCCAAGAGGCGGTCTCTTTCTCCTGAAAGT
CCCTCATGCCTCCCCTCCCTCCCTCCCTCCCTCTTTACCTCCTCCCTCCC
TCAGGATATTCACAGGGTGCTCGCCTCCTGGAACCGCATGGTGGAGAACC
AGCCGTTCGAGGACAAGGAGGCGCAGCGCTTCGCGACCTCGTACATTGAG
GGGCTGGAGGCAAAGCCATGGCACGATGTCTCCAAGTACGCCCGCCCTCC
CTCCCTCCCTCCTTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCA
CTTTCCTTTGCTTCCTTCCTGTTGTTTCGTCGCGCCAAACCTCTCCGGGA
TCTTCCTCTCCCCTCCCCCCTTCTCGCACTTCCCCCTCCCACCCTCGTCC
TCGCCCTCCGCCCGCCCGCCCTCCCTCCTTCCCTCCTTCCCTCCTCCCCT
GCCTCTTCCCTCCCAGGTTCCCCTGGCTGCAAAAGCTTGAGGAGAATGCG
GGGGTGGTGCAGCAGGAGCTGAAAGAGGCCTTGGCTATGGGAGAGATGCT
CGAGAAAACGGGGAACAACGTGTGGGTGGGCGCTCTGACCTCTGAGGGGG
CGGCATACGGGCCCGACTGGAAGACCTTGGTTCTGCAGGTACTAGAATGG
ATTGGTGGGATTGGAGTTTTTTTGGGGGGGGATTCGGGAGAGGGAGGTCG
TCAATGGCGCGGACCTGCGTGAAGTACTTGTCTCGTGTACATGTGAGTCT
TTCATGTCCATCTATCTATTTCTCGTTGTCGTATTCATCTACATACGTAC
TTGCATGGGAGGGTCCACGTCTTTCATGCATCTATGCTGACATGCCGTTG
GTGCCTGCGTGTAAAGAAGCCTTCCTCCTCTGTCCCTCTCCCTCCCCACA
GGACCGGGCTTGGGACGAGACCAATGCCCGAATCTTCCCCAAAACCGTCC
AGCTTCTTCGGGAAATTGGGGCCCCCACGGTGGAGGTCTTCTTTGCCAAG
CAGAAGGGAAAGACGGGGATCCAGCCGCATTCGGACGGCTGCAACTTCGT
CTTGACGGCTCACCTGGGTGTGGACGTGCCGGAGGGGGAGTGTTGGATCA
AGGTGGGGGGGCAGAAGGAGGAATGGCGGAACGGGAAGGCTCTGGCCTTC
GACACGCACTACTTCCACGAGACGGGCAATGCCAGCGACAAGGACCGTTA
CGTGCTTTTGATGCGGTTTTGGCACCCTGGTGTCACGCCCAAGGAGCGGG
AGGCGTTGCAGTACGTGTTTGACGCCCTGGATGGGCCCCAGGCGCAAACG
GACATGGATTTTGAATATTTGAACGGGCTCGCCGAAGCCCAGCTGGCGAG
TCGACGGGTGGAGGAGGTTGAGGAGGATGGGTGAGGGGTAAGGCAATGGA
GAGGAGGGAGGAGGCAACGGTGGGAATGGAAGGAGGAGCGGCAGCGGGCA
TGTAAGGGGGGGGGGGTTGACGGGAATGCGGGAGGAGGAGGATGATGGGT
AGGAAGATCTGGGAGGTAAAAGAAGGGGCGGTGACGCTCGCCTCGGAAAA
ACGCTGACAATGAAGGCTGTTGCAGGCCCTCCTGCTCGAGGAAAGAGGAG
TGGGGAGGGAGAGGAAATGGTTTTTTGAATTTTGATTGAACGAGGATGAA
TTGTGTACTGAGAGTTGACGATGACTTGGGAAGTGCGGGGGAACGGGGTG
AAAGGAGAAGGGCTTGAGGGATGACGGAAGGTGTCTCAGAGAGGCAGAGG
CGGGAGGCGGGAAGCGTCATGAAAGAAGAGTGAGGCCTTCGACCGTCGAT
CGCTGCGAGACTC back to topCoding sequence (CDS) from alignment at CM002467.1:181714..184676- >rna5948 ID=rna5948|Name=rna5948|organism=Nannochloropsis gaditana|type=CDS|length=3864bp|location=Sequence derived from alignment at CM002467.1:181714..184676- (Nannochloropsis gaditana)
GACCGGGCTTGGGACGAGACCAATGCCCGAATCTTCCCCAAAACCGTCCA
GCTTCTTCGGGAAATTGGGGCCCCCACGGTGGAGGTCTTCTTTGCCAAGC
AGAAGGGAAAGACGGGGATCCAGCCGCATTCGGACGGCTGCAACTTCGTC
TTGACGGCTCACCTGGGTGTGGACGTGCCGGAGGGGGAGTGTTGGATCAA
GGTGGGGGGGCAGAAGGAGGAATGGCGGAACGGGAAGGCTCTGGCCTTCG
ACACGCACTACTTCCACGAGACGGGCAATGCCAGCGACAAGGACCGTTAC
GTGCTTTTGATGCGGTTTTGGCACCCTGGTGTCACGCCCAAGGAGCGGGA
GGCGTTGCAGTACGTGTTTGACGCCCTGGATGGGCCCCAGGCGCAAACGG
ACATGGATTTTGAATATTTGAACGGGCTCGCCGAAGCCCAGCTGGCGAGT
CGACGGGTGGAGGAGGTTGAGGAGGATGGGTGAGTTCCCCTGGCTGCAAA
AGCTTGAGGAGAATGCGGGGGTGGTGCAGCAGGAGCTGAAAGAGGCCTTG
GCTATGGGAGAGATGCTCGAGAAAACGGGGAACAACGTGTGGGTGGGCGC
TCTGACCTCTGAGGGGGCGGCATACGGGCCCGACTGGAAGACCTTGGTTC
TGCAGGATATTCACAGGGTGCTCGCCTCCTGGAACCGCATGGTGGAGAAC
CAGCCGTTCGAGGACAAGGAGGCGCAGCGCTTCGCGACCTCGTACATTGA
GGGGCTGGAGGCAAAGCCATGGCACGATGTCTCCAAATGAAGCTTTTTTC
CATCCTTATGCTCGCGGCCACGGCTTCTGCCTTCCTCCCTCCCCTTCCTC
CCTCGACCCCAACCTTCCGGCCATCCACGTCCTTGGGCATGTCCTCCTTG
CTCATGGACGAAAACGCGGTGGCAGACCGCATTAAGGACGGACTGCTCAT
TCGCTACATGCCCGAGGACCGGGCTTGGGACGAGACCAATGCCCGAATCT
TCCCCAAAACCGTCCAGCTTCTTCGGGAAATTGGGGCCCCCACGGTGGAG
GTCTTCTTTGCCAAGCAGAAGGGAAAGACGGGGATCCAGCCGCATTCGGA
CGGCTGCAACTTCGTCTTGACGGCTCACCTGGGTGTGGACGTGCCGGAGG
GGGAGTGTTGGATCAAGGTGGGGGGGCAGAAGGAGGAATGGCGGAACGGG
AAGGCTCTGGCCTTCGACACGCACTACTTCCACGAGACGGGCAATGCCAG
CGACAAGGACCGTTACGTGCTTTTGATGCGGTTTTGGCACCCTGGTGTCA
CGCCCAAGGAGCGGGAGGCGTTGCAGTACGTGTTTGACGCCCTGGATGGG
CCCCAGGCGCAAACGGACATGGATTTTGAATATTTGAACGGGCTCGCCGA
AGCCCAGCTGGCGAGTCGACGGGTGGAGGAGGTTGAGGAGGATGGGTGAG
TTCCCCTGGCTGCAAAAGCTTGAGGAGAATGCGGGGGTGGTGCAGCAGGA
GCTGAAAGAGGCCTTGGCTATGGGAGAGATGCTCGAGAAAACGGGGAACA
ACGTGTGGGTGGGCGCTCTGACCTCTGAGGGGGCGGCATACGGGCCCGAC
TGGAAGACCTTGGTTCTGCAGGATATTCACAGGGTGCTCGCCTCCTGGAA
CCGCATGGTGGAGAACCAGCCGTTCGAGGACAAGGAGGCGCAGCGCTTCG
CGACCTCGTACATTGAGGGGCTGGAGGCAAAGCCATGGCACGATGTCTCC
AAATGAAGCTTTTTTCCATCCTTATGCTCGCGGCCACGGCTTCTGCCTTC
CTCCCTCCCCTTCCTCCCTCGACCCCAACCTTCCGGCCATCCACGTCCTT
GGGCATGTCCTCCTTGCTCATGGACGAAAACGCGGTGGCAGACCGCATTA
AGGACGGACTGCTCATTCGCTACATGCCCGAGGACCGGGCTTGGGACGAG
ACCAATGCCCGAATCTTCCCCAAAACCGTCCAGCTTCTTCGGGAAATTGG
GGCCCCCACGGTGGAGGTCTTCTTTGCCAAGCAGAAGGGAAAGACGGGGA
TCCAGCCGCATTCGGACGGCTGCAACTTCGTCTTGACGGCTCACCTGGGT
GTGGACGTGCCGGAGGGGGAGTGTTGGATCAAGGTGGGGGGGCAGAAGGA
GGAATGGCGGAACGGGAAGGCTCTGGCCTTCGACACGCACTACTTCCACG
AGACGGGCAATGCCAGCGACAAGGACCGTTACGTGCTTTTGATGCGGTTT
TGGCACCCTGGTGTCACGCCCAAGGAGCGGGAGGCGTTGCAGTACGTGTT
TGACGCCCTGGATGGGCCCCAGGCGCAAACGGACATGGATTTTGAATATT
TGAACGGGCTCGCCGAAGCCCAGCTGGCGAGTCGACGGGTGGAGGAGGTT
GAGGAGGATGGGTGAGTTCCCCTGGCTGCAAAAGCTTGAGGAGAATGCGG
GGGTGGTGCAGCAGGAGCTGAAAGAGGCCTTGGCTATGGGAGAGATGCTC
GAGAAAACGGGGAACAACGTGTGGGTGGGCGCTCTGACCTCTGAGGGGGC
GGCATACGGGCCCGACTGGAAGACCTTGGTTCTGCAGGATATTCACAGGG
TGCTCGCCTCCTGGAACCGCATGGTGGAGAACCAGCCGTTCGAGGACAAG
GAGGCGCAGCGCTTCGCGACCTCGTACATTGAGGGGCTGGAGGCAAAGCC
ATGGCACGATGTCTCCAAATGAAGCTTTTTTCCATCCTTATGCTCGCGGC
CACGGCTTCTGCCTTCCTCCCTCCCCTTCCTCCCTCGACCCCAACCTTCC
GGCCATCCACGTCCTTGGGCATGTCCTCCTTGCTCATGGACGAAAACGCG
GTGGCAGACCGCATTAAGGACGGACTGCTCATTCGCTACATGCCCGAGGA
CCGGGCTTGGGACGAGACCAATGCCCGAATCTTCCCCAAAACCGTCCAGC
TTCTTCGGGAAATTGGGGCCCCCACGGTGGAGGTCTTCTTTGCCAAGCAG
AAGGGAAAGACGGGGATCCAGCCGCATTCGGACGGCTGCAACTTCGTCTT
GACGGCTCACCTGGGTGTGGACGTGCCGGAGGGGGAGTGTTGGATCAAGG
TGGGGGGGCAGAAGGAGGAATGGCGGAACGGGAAGGCTCTGGCCTTCGAC
ACGCACTACTTCCACGAGACGGGCAATGCCAGCGACAAGGACCGTTACGT
GCTTTTGATGCGGTTTTGGCACCCTGGTGTCACGCCCAAGGAGCGGGAGG
CGTTGCAGTACGTGTTTGACGCCCTGGATGGGCCCCAGGCGCAAACGGAC
ATGGATTTTGAATATTTGAACGGGCTCGCCGAAGCCCAGCTGGCGAGTCG
ACGGGTGGAGGAGGTTGAGGAGGATGGGTGAGTTCCCCTGGCTGCAAAAG
CTTGAGGAGAATGCGGGGGTGGTGCAGCAGGAGCTGAAAGAGGCCTTGGC
TATGGGAGAGATGCTCGAGAAAACGGGGAACAACGTGTGGGTGGGCGCTC
TGACCTCTGAGGGGGCGGCATACGGGCCCGACTGGAAGACCTTGGTTCTG
CAGGATATTCACAGGGTGCTCGCCTCCTGGAACCGCATGGTGGAGAACCA
GCCGTTCGAGGACAAGGAGGCGCAGCGCTTCGCGACCTCGTACATTGAGG
GGCTGGAGGCAAAGCCATGGCACGATGTCTCCAAATGAAGCTTTTTTCCA
TCCTTATGCTCGCGGCCACGGCTTCTGCCTTCCTCCCTCCCCTTCCTCCC
TCGACCCCAACCTTCCGGCCATCCACGTCCTTGGGCATGTCCTCCTTGCT
CATGGACGAAAACGCGGTGGCAGACCGCATTAAGGACGGACTGCTCATTC
GCTACATGCCCGAG back to top
|