rna5931, rna5931 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5931
Unique Name	rna5931
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1157
Alignment location	CM002467.1:128926..131652 +

Link to JBrowse

Properties


Property Name	Value
Product	Arrestin-like protein
Orig transcript id	gnl\|cribi\|Naga_100292g2.1294.mrna
Orig protein id	gnl\|cribi\|Naga_100292g2.1294
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:128926..131652 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100292g2	gene5728	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5931	rna5931-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24759.1	cds5916	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:128926..131652+
coding sequence from alignment at CM002467.1:128926..131652+

mRNA sequence

>rna5931 ID=rna5931|Name=rna5931|organism=Nannochloropsis gaditana|type=mRNA|length=1157bp
ATGAAGGTGAAATATTGCGATGGGACTATCAAAGGCGTCATGTTTAAGGA
TGTAATTGTAGTACCCAATCTGAGTCGCGAATTATTATCCATGGCAAAAA
CAGATAAGGCTGGTGGAAGAATTGTTATCCGTGAAGGAAAGGGTATAATT
CAAAAGGGTGACACATGCTTGCCGATGAGAAAAGTAGATAACATGTACCT
GTTAGACTGCTACGGCGAACCATGTGAGGAAGCTAATGTAGTTAGCTCAC
CTGAATTATGGCATAAAAGGTTCGGACACATCAATTATGAATACCTGAGA
CAAATGGGTGAAATTGATGATACCGGAGTGCCAAAAGGGATGAAGAAACC
TGAGACACCGGCGAGTATAAGGCAACCTAACACTAGAGGTGAAACTTATC
ATAATGAGGAAGAAGATGATAAGGATTCTCTGGAAGAGACACCGGCGAGT
ATAAGGCAACCTAACACTAGAGGTGAAACTTATCATAATGAGGAAGAAGA
TGATAAGGATTCTCTGAAGACAGTGGGGGCTCATCAGGAAGATGATGTAC
TACCTTCTGATACAAGTGAGGATGATGACGGCATCGAAAATGGGTCACAT
CAAGATGAACAACCTGATGATCGTGATGTCGATCATGTCAGGGAGGATCC
GTCGCAAGTGGGGGCGACAGGATGGAAAGACACTGATGATATTATTCGGA
ATATGAACAATATGGGACGCACACGAAGCAGGACGAAAGCTCGTGAATAT
CATCGAATATATGATGGACCAGCAACCATGGGAGGTAATTTAGCCGTTGC
TGCAGCCTCAGAAATTGTCAATGAGGACTATCATCGTACGGAAGATGAGA
ATGAGGTGCGAGCTGAAGGGAAGAAAGCCAAGGATGCAGAATACCAGGCA
CACATGAAGAACGTCCTCATTGACAATTTCTGAGGCTGCAGCAAAGGCTA
AATTACCTCCCATGGTTACTGGTCCATCACATATTCGATGATATTCACGA
GCTTTCGTCCTGCTTCGTGTGCATCCCATATTGTTCATATTCCGAACAAT
ATCATCAGGGTTGTAAAAAAATCAATCAGACAGATACGATCTCCTTTCCG
TAGGTTTTGAGTTGACTAAGAATTACGTGATTGACTCTGCCTGGTGCATC
ATGACGA

protein sequence of rna5931

>rna5931-protein ID=rna5931-protein|Name=rna5931|organism=Nannochloropsis gaditana|type=polypeptide|length=198bp
MKMEKSSATTPLLPVGHGIQDGALIQVASTKNGISLWLLKDVFYPGETIH
GKMKATFTSQMSVRAIKIKLTSRAKAFWWIFNGTQMVPICASLNLAPTIE
SSLQEMIPIRTNFVLEPGQQYEWPVELTLPQSLPSSFSFKKWTNVMREKT
HIAYTLTLLVEVPGWMDYKLNYNLKVHSSPVSITPVSTWLRDQKVAIA

mRNA from alignment at CM002467.1:128926..131652+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5931 ID=rna5931|Name=rna5931|organism=Nannochloropsis gaditana|type=mRNA|length=2727bp|location=Sequence derived from alignment at CM002467.1:128926..131652+ (Nannochloropsis gaditana)
AGATCAGATGGAGTGTTAACCTTATTTTCTATTGTCCAATATGTTTACAT
ATGGAGGGTTTCCAATCAGGCGTTGATTGTGAAAAATTATTCTATGAAGT
TGCTCTTCCCACTGTCAAAGAAGACTGACAGAAAAGGCAATATTGTGGAA
CATAAGTGTGAAGCACAGGTGTTAACTTAAAGATTCCGGTACTTCAGAAG
AAGTGAGCTTCGTATTCGATGAAGATGGAAAAGTCTTCTGCCACCACGCC
TTTGCTTCCAGTAGGACATGGCATTCAAGATGGCGCTTTGGTAAGAAGAC
CCTTCGAAACCTTTATACTTCAGCTTTTCCCCATACTTTTATGACCATAC
TTCCCACCTCAAATTGCTTGCGTTATGTGTATTTGATATTGTCCGTTCCA
GATACAAGTCGCTTCTACCAAAAATGGGATCTCATTATGGCTGCTCAAAG
ACGTATTCTATCCCGGGGAAACAATTCACGGGAAAATGAAAGCTACATTC
ACTTCTCAAATGAGTGTCAGGGCAATAAAAATAAAGGTACCCACAAAAGT
CTCACATGTGTTCATAGAACGTACGAGCGTGTAATGCTTTACTTGGGGAC
GTGGTTGATAAGTCAAAGTCCTCAAATCTTAATAAGTTTGTTCTCAACCA
AAAGCTGACAAGTAGAGCAAAAGCTTTCTGGTGGATATTCAACGGCACAC
AAATGGTGCCTATATGCGCCAGCCTTAATCTGGCTCCTACAATCGAATCA
AGTTTGCAGGAGATGATTCCGATACGCACCAACTTTGTACTGGAACCTGG
TCAGCAGTATGAATGGCCGGTAGGAAGTTGAAATATCACAAAATGTCTTC
CATTCACCGCGTACCGCCCTCAATCACCATTTAATTTCGATCACCCTATT
CACAGGTGGAGCTCACGCTTCCTCAATCTCTCCcgtcttcattttccttC
AAAAAGTGGACCAATGTGATGAGAGAAAAAACACACATCGCTTATACCCT
AACTCTTTTGGTGGAAGTCCCAGGTTGGATGGACTACAAATTAAACTATA
ATTTGAAAGTTCATTCCTCCCCCGTATCCATCACTCCAGTAAGCACTTGG
TTGAGAGATCAGAAAGTTGCCATTGCATAGAATACAAGGAACGGAACTTT
CCCCACAAGCACTTTGCCCCATCGCATCCTTACCGCCCCTATGCCTGTCC
TGTGCAGGAAATGCGTCTTCCTGTAGAGCTTAGGACCTGCGGTCCCATCA
GCTCGTGTTACTGTTTTCTGGGGAAGGTACTTGGAGGAAAGCATAAGCGA
AAAAGATAAACCACCCTCGGGACGTGATACACTCATAACGGGTGTATTTA
TGCCTCATTATAATATGGACTGCCGGTTTTTAGAAATCTATCCCTCTTTT
GTATCACATTGCACGGCATCCTACCATACATCTGTAAGCAATTGATAGAG
AGGACAGTCATTTCATCTCTTTTCTGCTCCATGACTATGTGCCAGGGGGA
GGCTACTCTACATCTTGTGGTTCCTGTCAGCTGCCTTCCTTTTGCGGACG
GGACTTCTGTTTCTCCTAACTCCTTTCCCATTTCTGTGGGCGTGGAGAAT
CTGAGTGGAACAGCTGTCACAAACGTCCGCCTTGCGCTGATtggaggtga
gagaggaaCAGAAAAGATCAATCTTCTCTTCGTATGCTTGAAAGATTTCC
TTAATATTATGCGAAATCACAGAGATTCTGCTGTCCAACAGACTCGAAGA
GTCGAGATGTACGATACGAGATCGCTGCTCCTTCACTGTTATCGACCACC
TAATCGTACCCAAGATCCTACCGGGGACCACCTTCCCTCTACAGGCCGTC
AGCACATTTCCCACCTTGCAATTGAAGTGGGACTCAGAGATTGAtgtcgc
ttcctcccgttTTTCCACTCCGAAAAACTTGCACACAGTTCAGATGCCCA
CTCTTGCGGCGGGAAATTTGATAAAGGTAGTGTCCGGGGCAGGAACGGGT
GTCTCTTTTCTCAAATGCCGCAAGCGTGCCGTATCACACTAACTTAAAAT
TTTCGTCCTTGAAAATACAAAGATAACCTACTAAACGAAATGGTGCTTCT
GTGCCTACTCGTGATTGCCGCAGCCACCCACTCCGCcaacctttccttcc
ctaGATCACTTATCGATTGGAGCTCACCGCTAAAGGCGGCCGGTGCAAGA
GTCTGAAGCTTGTGACACCAATCACATTTGCGCCCTCGgattcccctcct
ccgccggacAATGCCACTTCACCGCTGCGTTCTCCATATACGGGGGATGG
TCCGTCGACATGACACATACTATCGTCTCGTACTTTGTACTCGGTGCGTC
ATTTCAAAGTCATGGCATGTCAGGGTTTAATTTGCCCCTTGTTTGTGGAT
ATCAAAAGGTTGTCTTGcgagggaaaatggagagaAGGAATTGCAGTCAC
GTTGCTAACAGGAGTAAAGCCCATGAATCAGGTTGAGCGAAGTTGGGAAG
CAGTGGTCAGTATAAACGGAGAAAATCCCGAAACGTAACCTAGCAAAGAT
ACTCAAAAAACGTCGAGACAATGGCGGTATGCCCGCAATTAAGCTACTTT
GAGACATGTGCGTCCTCCCTATCGGACAGAGTATTTCCGGCTTCCGATTT
CgtccttccaccttccccccgcctcagCCTCTGCTTTTGCAACCCCTTGG
ATAGAGAGCCCCGTGGTGGATCCTGGA

Coding sequence (CDS) from alignment at CM002467.1:128926..131652+

>rna5931 ID=rna5931|Name=rna5931|organism=Nannochloropsis gaditana|type=CDS|length=2388bp|location=Sequence derived from alignment at CM002467.1:128926..131652+ (Nannochloropsis gaditana)
ATGAAGATGGAAAAGTCTTCTGCCACCACGCCTTTGCTTCCAGTAGGACA
TGGCATTCAAGATGGCGCTTTGATACAAGTCGCTTCTACCAAAAATGGGA
TCTCATTATGGCTGCTCAAAGACGTATTCTATCCCGGGGAAACAATTCAC
GGGAAAATGAAAGCTACATTCACTTCTCAAATGAGTGTCAGGGCAATAAA
AATAAAGCTGACAAGTAGAGCAAAAGCTTTCTGGTGGATATTCAACGGCA
CACAAATGGTGCCTATATGCGCCAGCCTTAATCTGGCTCCTACAATCGAA
TCAAGTTTGCAGGAGATGATTCCGATACGCACCAACTTTGTACTGGAACC
TGGTCAGCAGTATGAATGGCCGGTGGAGCTCACGCTTCCTCAATCTCTCC
cgtcttcattttccttCAAAAAGTGGACCAATGTGATGAGAGAAAAAACA
CACATCGCTTATACCCTAACTCTTTTGGTGGAAGTCCCAGGTTGGATGGA
CTACAAATTAAACTATAATTTGAAAGTTCATTCCTCCCCCGTATCCATCA
CTCCAGTAAGCACTTGGTTGAGAGATCAGAAAGTTGCCATTGCATAGATG
AAGATGGAAAAGTCTTCTGCCACCACGCCTTTGCTTCCAGTAGGACATGG
CATTCAAGATGGCGCTTTGATACAAGTCGCTTCTACCAAAAATGGGATCT
CATTATGGCTGCTCAAAGACGTATTCTATCCCGGGGAAACAATTCACGGG
AAAATGAAAGCTACATTCACTTCTCAAATGAGTGTCAGGGCAATAAAAAT
AAAGCTGACAAGTAGAGCAAAAGCTTTCTGGTGGATATTCAACGGCACAC
AAATGGTGCCTATATGCGCCAGCCTTAATCTGGCTCCTACAATCGAATCA
AGTTTGCAGGAGATGATTCCGATACGCACCAACTTTGTACTGGAACCTGG
TCAGCAGTATGAATGGCCGGTGGAGCTCACGCTTCCTCAATCTCTCCcgt
cttcattttccttCAAAAAGTGGACCAATGTGATGAGAGAAAAAACACAC
ATCGCTTATACCCTAACTCTTTTGGTGGAAGTCCCAGGTTGGATGGACTA
CAAATTAAACTATAATTTGAAAGTTCATTCCTCCCCCGTATCCATCACTC
CAGTAAGCACTTGGTTGAGAGATCAGAAAGTTGCCATTGCATAGATGAAG
ATGGAAAAGTCTTCTGCCACCACGCCTTTGCTTCCAGTAGGACATGGCAT
TCAAGATGGCGCTTTGATACAAGTCGCTTCTACCAAAAATGGGATCTCAT
TATGGCTGCTCAAAGACGTATTCTATCCCGGGGAAACAATTCACGGGAAA
ATGAAAGCTACATTCACTTCTCAAATGAGTGTCAGGGCAATAAAAATAAA
GCTGACAAGTAGAGCAAAAGCTTTCTGGTGGATATTCAACGGCACACAAA
TGGTGCCTATATGCGCCAGCCTTAATCTGGCTCCTACAATCGAATCAAGT
TTGCAGGAGATGATTCCGATACGCACCAACTTTGTACTGGAACCTGGTCA
GCAGTATGAATGGCCGGTGGAGCTCACGCTTCCTCAATCTCTCCcgtctt
cattttccttCAAAAAGTGGACCAATGTGATGAGAGAAAAAACACACATC
GCTTATACCCTAACTCTTTTGGTGGAAGTCCCAGGTTGGATGGACTACAA
ATTAAACTATAATTTGAAAGTTCATTCCTCCCCCGTATCCATCACTCCAG
TAAGCACTTGGTTGAGAGATCAGAAAGTTGCCATTGCATAGATGAAGATG
GAAAAGTCTTCTGCCACCACGCCTTTGCTTCCAGTAGGACATGGCATTCA
AGATGGCGCTTTGATACAAGTCGCTTCTACCAAAAATGGGATCTCATTAT
GGCTGCTCAAAGACGTATTCTATCCCGGGGAAACAATTCACGGGAAAATG
AAAGCTACATTCACTTCTCAAATGAGTGTCAGGGCAATAAAAATAAAGCT
GACAAGTAGAGCAAAAGCTTTCTGGTGGATATTCAACGGCACACAAATGG
TGCCTATATGCGCCAGCCTTAATCTGGCTCCTACAATCGAATCAAGTTTG
CAGGAGATGATTCCGATACGCACCAACTTTGTACTGGAACCTGGTCAGCA
GTATGAATGGCCGGTGGAGCTCACGCTTCCTCAATCTCTCCcgtcttcat
tttccttCAAAAAGTGGACCAATGTGATGAGAGAAAAAACACACATCGCT
TATACCCTAACTCTTTTGGTGGAAGTCCCAGGTTGGATGGACTACAAATT
AAACTATAATTTGAAAGTTCATTCCTCCCCCGTATCCATCACTCCAGTAA
GCACTTGGTTGAGAGATCAGAAAGTTGCCATTGCATAG

Synonyms

Publications