rna5930, rna5930 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5930
Unique Name	rna5930
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2030
Alignment location	CM002467.1:126200..128377 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100292g3.1293.mrna
Orig protein id	gnl\|cribi\|Naga_100292g3.1293
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:126200..128377 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100292g3	gene5727	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5930	rna5930-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24758.1	cds5915	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:126200..128377+
coding sequence from alignment at CM002467.1:126200..128377+

mRNA sequence

>rna5930 ID=rna5930|Name=rna5930|organism=Nannochloropsis gaditana|type=mRNA|length=2030bp
ACGCCTTTATTCATTACACACCGATATAAATTGTACATTATAAACAGATG
AACATATCAATCTTGAGCTTGTTGGGCTCTTTGAGCACAGCGCGTCTGCC
GATGGTGAACCAGCGCTTGTGCTCGTGTATTCCCGCCCTTCTGTTTGCCA
CCCTCCTTCTCTTTTTATCTTCTGCACATGCCTACCGCGAGAATTATACG
TGCCATTTCGCACCTTCCATCCCTGAAGATCGTCGTCCAAGTCCTTATCG
ACTTCGTATAGTCCAGTTCAACGTGGAATTTTTCTTCCTCGATCAAAGTG
AAGGAGGTTTAGTATGTCCGGGACCTGATTGTCCTTGGCCAGACGCGGAA
ACTGCGCATGCTCATGCACTTCGGATAGCCAACGTTTTGAAAGAATTGCG
ACCTGACATTGTAAATTTGTGCGAAGTGGAAGGATGTGACGAGATAAACT
GGTTGGCGACGAGGTTGAATGAAGAGGCCTCCGAGCGCGTGCAGGAAGAA
GCAGGACCAGACACGCCGACTCAAGCCTTTGGCTACAATTATTTCCTGCT
GAAAGGCCAGGACACTTTTACGGGTCAAAACACTGCCCTTCTCACCCGTA
TCGATCCCTCCACGGACCTTGATCGAAGCACCGACAGGGTTCCATACCCT
CTGCCTGGATCCCAGTGTGGTTGGGAGACAAGGAGAGCCAGCGCCTGGGC
GGGGGGAAATTTCCGGCAGCAATTTGGAGACCGAACCAACGGGCACATTG
GAGGGTCGGCCGATGGACAGGCGGGGGTTTCCAAGCATTATTTCACGACC
TTCCACCTGCAAGAGGTGGGCGTGAAAATCGCCATAGTGGGGATCCATCT
GTTGGCCCGGCCCATAGACCCAGAGCGATGCGCGGAGCGGGAGGCCCAAG
CCACGGTGTTGCGGGGTGTGGTCGACGGCTTTATTGCCGAGGGTTACGAG
GTTGTCGTCCTCGGTGACTTTAATGACTTTGATGGCTCGGTGCCGGACAT
CAACAACAACTTGCCCACGTCCCGCGTGATGGAAATTCTGAAGGGAACGG
ATCTTTTTCCCACCGCCACTTTTCTGCCTCAAGCAGAGCGTTACACCGAT
TGGTGGGACCGAAATGGAAATTGTCAGGTGGACGCTCCGGAGGAGCTGGA
TATGATCGACCACGTCCTGCTCACAAAAGGCCTGCAGGAGCGTGTCATTG
CCGTGTACGTCTACCATGCGTATGACGAGTATTGTGGCACCTTAGATAGC
GACCATTACCCGGTGGTGATTGATTTGGAGTGGGAAGGGGTCAAGAAGGA
GTGGTTGGACGACTTGGAAACGGAAGGGTCAAGCAAAATGGCGTAAAATT
ATCTGTAGATGGTCAAGTTCTGTAAAGGGTGCGATGAAACAGAAAGATGG
AGACAAGTCCCCAAAAATCGATAGGCACGTAGATTGTACATAGAAAGATG
AGTACGCCTGTGAAGGTGAAAATGGATGACGTCATGACTGAATGGCGGTG
GATAGCTGGAGAAATCGACGTTCCTTGGGGGACCGGAGCTTGTGTCAGTA
CGACTTGAGCAAAGTAAAGAGCACGAGCAATCAGAAAGCGGAGGAGCGGA
TGATCATCTTGATGCGAATGGCAAGCGCTTGATCTTATTTTGCCGTGTAA
CCTTTGACACGAATATAAGGATGACATGATGATGACAATTAAGGAACAGG
AGATCAGCGCTAGGAGGTTGGGGGAATCGGGTATCAGCGATAGGAGGTTT
AGAGAGTGTTGCAGCTATTTTCCTTTATGAGTTCTAGGTCTGTACCACGT
CGTGCTGATCGCTATTGAGTCATGTCATGGTTTTGCGTCCACCTAATCAT
TTTCTATGTTATATCATAATACGACAACAGGACTGGCGTCGACCAGTGTC
TTTGGTTGTCTGTCCTATTGGTTATCTTAGTACGAGATTCTTGGGTGAAT
CATTGGTATACATTCTCAGGGAGAATAGTGGTCGTACTGAAGAATTAATT
GGGTATTGAGTTACCCGTGACGTTTTGGTT

protein sequence of rna5930

>rna5930-protein ID=rna5930-protein|Name=rna5930|organism=Nannochloropsis gaditana|type=polypeptide|length=310bp
MKVKYCDGTIKGVMFKDVIVVPNLSRELLSMAKTDKAGGRIVIREGKGII
QKGDTCLPMRKVDNMYLLDCYGEPCEEANVVSSPELWHKRFGHINYEYLR
QMGEIDDTGVPKGMKKPETPASIRQPNTRGETYHNEEEDDKDSLEETPAS
IRQPNTRGETYHNEEEDDKDSLKTVGAHQEDDVLPSDTSEDDDGIENGSH
QDEQPDDRDVDHVREDPSQVGATGWKDTDDIIRNMNNMGRTRSRTKAREY
HRIYDGPATMGGNLAVAAASEIVNEDYHRTEDENEVRAEGKKAKDAEYQA
HMKNVLIDNF

mRNA from alignment at CM002467.1:126200..128377+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5930 ID=rna5930|Name=rna5930|organism=Nannochloropsis gaditana|type=mRNA|length=2178bp|location=Sequence derived from alignment at CM002467.1:126200..128377+ (Nannochloropsis gaditana)
ATGAAGGTGAAATATTGCGATGGGACTATCAAAGGCGTCATGTTTAAGGA
TGTAATTGTAGTACCCAATCTGAGTCGCGAATTATTATCCATGGCAAAAA
CAGATAAGGCTGGTGGAAGAATTGTTatccgtgaaggaaagggtatAATT
CAAAAGGGTGACACATGCTTGCCGATGAGAAAAGTAGATAACATGTACCT
GTTAGACTGCTACGGCGAACCATGTGAGGAAGCTAATGTAGTTAGCTCAC
CTGAATTATGGCATAAAAGGTTCGGACACATCAATTATGAATACCTGAGA
CAAATGGGTGAAATTGATGATACCGGAGTGCCAAAAGGGATGAAGAAACC
TGGTATTTGTGGGACGTGTGAACGAGGAAAACAAACTAAAATGAGTTTCA
GCGCCAAGtctagggagagggcgaaggagcCTCTCGAACTAGTTCACACT
GATGTACTTGGACCAGTCGAAGTAGAATCACTTGGTGGCGCACGATATGC
GATTGGATTTACGGATGATTACACCCGATGGAGGGTGGTATATCCAATAA
ACTGCAAATCAGAATCTCTAGATTGTTTGAAACGGTACCTTCAAGAAATG
AAAGTATTACTCCATGATTACGAAGTAAATACTTTGATTGGAATAAGATC
GGACAATGGAGGTGAATATACTGGCATAGATTTCAAGAATTTCTGCAAGA
ACAACAGTATCAGACAAGATTTTAGTATGCCATATAGGCCACAAGATAAT
TGAGTTGCCGAGAAGTCATGGCATATATTGTTAAATTTGCTCGAAATCTT
CGCATACAAGCCGGACTGGGAAAATGTTTTTGGGCTGAAGCCTTGCATAC
TGCAACATATATTCTAAACCGATCTAGAACTGCATTGAGTGGAGGCGAAA
CGCCCTACTACAAAATGTTCGGGAAGCATGCGAACGTCAAGCATTTAAAA
TTTTTCGGATGCAAGGCATTTGTGCATAACACATCTGTTACAAGAAGAAA
ACTTGATGATCGCGCTTCAGAAGGGATCATGATTGGATATGATGACATAG
GGAACAATCCTAAATGTTATTGAATTTATTTGCCTTCTATTGGAAAATAC
ATCAGATCTGGTCATGTCACGTTTGATGAAGAGACACCGGCGAGTATAAG
GCAACCTAACACTAGAGGTGAAACTTATCataatgaggaagaagatgata
aGGATTCTCTGGAAGAGACACCGGCGAGTATAAGGCAACCTAACACTAGA
GGTGAAACTTATCataatgaggaagaagatgataaGGATTCTCTGAAGAC
AGTGGGGGCTCATCAGGAAGATGATGTACTACCTTCTGATACAagtgagg
atgatgacggCATCGAAAATGGGTCACATCAAGATGAACAACCTGATGAT
CGTGATGTCGATCATGTCAGGGAGGATCCGTCGCAAGTGGGGGCGACAGG
ATGGAAAGACACTGATGATATTATTCGGAATATGAACAATATGGGACGCA
CACGAAGCAGGACGAAAGCTCGTGAATATCATCGAATATATGATGGACCA
GCAACCATGGGAGGTAATTTAGCCGTTGCTGCAGCCTCAGAAATTGTCAA
TGAGGACTATCATCGTACGGAAGATGAGAATGAGGTGCGAGctgaaggga
agaaagccaAGGATGCAGAATACCAGGCACACATGAAGAACGGTACCTGG
GAATTAACCCCATTACCAAAGGGAGAACGATGCACCACGAGTGGCTGGGT
TGAAACGGATAAACGAGATCAAAATGGCATCAtcggaaggagaaaagcaA
GATTCATTGCAAAGGGCTACAGTCCAGTCAGGGTTAATTCCCAGGTACCG
TTCTTCATGTGCGCCTGGTACTCCGCATGCTtggctttcttcttttcagC
TCGCACCTCATTCTCATCTTCCGTACGATGATAGTCCTCATTGACAATTT
CTGAGGCTGCAGCAAAGGCTAAATTACCTCCCATGGTTACTGGTCCATCA
CATATTCGATGATATTCACGAGCTTTCGTCCTGCTTCGTGTGCATCCCAT
ATTGTTCATATTCCGAACAATATCATCAGGGTTGTAAAAAAATCAATCAG
ACAGATACGATCTCCTTTCCGTAGGTTTTGAGTTGACTAAGAATTACGTG
ATTGACTCTGCCTGGTGCATCATGACGA

Coding sequence (CDS) from alignment at CM002467.1:126200..128377+

>rna5930 ID=rna5930|Name=rna5930|organism=Nannochloropsis gaditana|type=CDS|length=2799bp|location=Sequence derived from alignment at CM002467.1:126200..128377+ (Nannochloropsis gaditana)
ATGAAGGTGAAATATTGCGATGGGACTATCAAAGGCGTCATGTTTAAGGA
TGTAATTGTAGTACCCAATCTGAGTCGCGAATTATTATCCATGGCAAAAA
CAGATAAGGCTGGTGGAAGAATTGTTatccgtgaaggaaagggtatAATT
CAAAAGGGTGACACATGCTTGCCGATGAGAAAAGTAGATAACATGTACCT
GTTAGACTGCTACGGCGAACCATGTGAGGAAGCTAATGTAGTTAGCTCAC
CTGAATTATGGCATAAAAGGTTCGGACACATCAATTATGAATACCTGAGA
CAAATGGGTGAAATTGATGATACCGGAGTGCCAAAAGGGATGAAGAAACC
TGAGACACCGGCGAGTATAAGGCAACCTAACACTAGAGGTGAAACTTATC
ataatgaggaagaagatgataaGGATTCTCTGGAAGAGACACCGGCGAGT
ATAAGGCAACCTAACACTAGAGGTGAAACTTATCataatgaggaagaaga
tgataaGGATTCTCTGAAGACAGTGGGGGCTCATCAGGAAGATGATGTAC
TACCTTCTGATACAagtgaggatgatgacggCATCGAAAATGGGTCACAT
CAAGATGAACAACCTGATGATCGTGATGTCGATCATGTCAGGGAGGATCC
GTCGCAAGTGGGGGCGACAGGATGGAAAGACACTGATGATATTATTCGGA
ATATGAACAATATGGGACGCACACGAAGCAGGACGAAAGCTCGTGAATAT
CATCGAATATATGATGGACCAGCAACCATGGGAGGTAATTTAGCCGTTGC
TGCAGCCTCAGAAATTGTCAATGAGGACTATCATCGTACGGAAGATGAGA
ATGAGGTGCGAGctgaagggaagaaagccaAGGATGCAGAATACCAGGCA
CACATGAAGAACGTCCTCATTGACAATTTCTGAATGAAGGTGAAATATTG
CGATGGGACTATCAAAGGCGTCATGTTTAAGGATGTAATTGTAGTACCCA
ATCTGAGTCGCGAATTATTATCCATGGCAAAAACAGATAAGGCTGGTGGA
AGAATTGTTatccgtgaaggaaagggtatAATTCAAAAGGGTGACACATG
CTTGCCGATGAGAAAAGTAGATAACATGTACCTGTTAGACTGCTACGGCG
AACCATGTGAGGAAGCTAATGTAGTTAGCTCACCTGAATTATGGCATAAA
AGGTTCGGACACATCAATTATGAATACCTGAGACAAATGGGTGAAATTGA
TGATACCGGAGTGCCAAAAGGGATGAAGAAACCTGAGACACCGGCGAGTA
TAAGGCAACCTAACACTAGAGGTGAAACTTATCataatgaggaagaagat
gataaGGATTCTCTGGAAGAGACACCGGCGAGTATAAGGCAACCTAACAC
TAGAGGTGAAACTTATCataatgaggaagaagatgataaGGATTCTCTGA
AGACAGTGGGGGCTCATCAGGAAGATGATGTACTACCTTCTGATACAagt
gaggatgatgacggCATCGAAAATGGGTCACATCAAGATGAACAACCTGA
TGATCGTGATGTCGATCATGTCAGGGAGGATCCGTCGCAAGTGGGGGCGA
CAGGATGGAAAGACACTGATGATATTATTCGGAATATGAACAATATGGGA
CGCACACGAAGCAGGACGAAAGCTCGTGAATATCATCGAATATATGATGG
ACCAGCAACCATGGGAGGTAATTTAGCCGTTGCTGCAGCCTCAGAAATTG
TCAATGAGGACTATCATCGTACGGAAGATGAGAATGAGGTGCGAGctgaa
gggaagaaagccaAGGATGCAGAATACCAGGCACACATGAAGAACGTCCT
CATTGACAATTTCTGAATGAAGGTGAAATATTGCGATGGGACTATCAAAG
GCGTCATGTTTAAGGATGTAATTGTAGTACCCAATCTGAGTCGCGAATTA
TTATCCATGGCAAAAACAGATAAGGCTGGTGGAAGAATTGTTatccgtga
aggaaagggtatAATTCAAAAGGGTGACACATGCTTGCCGATGAGAAAAG
TAGATAACATGTACCTGTTAGACTGCTACGGCGAACCATGTGAGGAAGCT
AATGTAGTTAGCTCACCTGAATTATGGCATAAAAGGTTCGGACACATCAA
TTATGAATACCTGAGACAAATGGGTGAAATTGATGATACCGGAGTGCCAA
AAGGGATGAAGAAACCTGAGACACCGGCGAGTATAAGGCAACCTAACACT
AGAGGTGAAACTTATCataatgaggaagaagatgataaGGATTCTCTGGA
AGAGACACCGGCGAGTATAAGGCAACCTAACACTAGAGGTGAAACTTATC
ataatgaggaagaagatgataaGGATTCTCTGAAGACAGTGGGGGCTCAT
CAGGAAGATGATGTACTACCTTCTGATACAagtgaggatgatgacggCAT
CGAAAATGGGTCACATCAAGATGAACAACCTGATGATCGTGATGTCGATC
ATGTCAGGGAGGATCCGTCGCAAGTGGGGGCGACAGGATGGAAAGACACT
GATGATATTATTCGGAATATGAACAATATGGGACGCACACGAAGCAGGAC
GAAAGCTCGTGAATATCATCGAATATATGATGGACCAGCAACCATGGGAG
GTAATTTAGCCGTTGCTGCAGCCTCAGAAATTGTCAATGAGGACTATCAT
CGTACGGAAGATGAGAATGAGGTGCGAGctgaagggaagaaagccaAGGA
TGCAGAATACCAGGCACACATGAAGAACGTCCTCATTGACAATTTCTGA

Synonyms

Publications