rna5922, rna5922 (mRNA) Nannochloropsis gaditana

Overview
Namerna5922
Unique Namerna5922
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2632
Alignment locationCM002467.1:105323..106146 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101200g2.103.mrna
Orig protein idgnl|cribi|Naga_101200g2.103
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:105323..106146 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101200g2gene5719Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5922rna5922-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24766.1cds5907Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5922 ID=rna5922|Name=rna5922|organism=Nannochloropsis gaditana|type=mRNA|length=2632bp
TAATTGCAGAAGGAGCACAACTTAGAATAAAGAGGAATAGCGAAACAAGA
ACAAAGGCCAAAAGATACAGGAAACAGGGACCAGGAATCACGAATGCACC
TACCCAATGAGCAGCTCCTCACGCAATCGAGTGTTACTACTCGCCGCACG
CATATCCCCAGGGTCTTTCAAATGGAAAAGAAGCTTGCGGAGCATATTTT
GATACTCTCGGGAGGCAATCCTATGCTCAATGTCGCAGCCCACGAAAGGG
AAATGAGTACAAGCCAGTCAGTGAGTCACATTGCTAAAAGACCGCGGGTA
TTGACGACCGTAAGCGACCTCTCCCTTCTCGGTCCACAGGCACGACATTC
ACCAATTCGGTACCCGACACCACGCCCCAGAAACCCCATGGCGGCTTTTC
GTTTTGCACACCATCCCATCGCCCACGTCTCCCTCTTTGAACGCCATCCC
CTGGCGCACTCACCGTTCCTGCGTCGCCAAGAATAGTTCGCGCTCAAGGG
CTCGGCAAAGGGGCTCAGGCAGTTTGGTTTTCTGTACCAAGGCATCCACG
TGACGTGCCCGCAGGACTAGGGCAGGAGGGAAAGGAGCAAAGGGAACGAG
GGAAGGCGGGGTGAAGGGAGAGCGAGGGACAGGGGGGGTAGAGATCTTGT
CTTACTATTCCTGATACCGTGATCGACTGTCTCAGGCGTCCACCACTATT
TTTAATTGGTATCCTTTTTCCTGTCATTTCCTCCTTCACACTTGACAGTT
ACGCCCTTGACCCTCCGTTTTATGGCCTTTTCGGGTTCGACACAGCCAGC
ACGCCTCCCTGGAGTACACTTCTTACCCAATGTTTTCGCTTTTTCCCATC
GTTTGCAGCATTTCCCGCGTGAAGACCCTGCGTAGGTGAGGATGCGGCAA
AGGACGTCCTGTGGACAGTGCAACATTAGAAAATAAGCTCAGATGGCAGC
ACAGAGCACACAAATGATATGACCGGATGATTTGATACGACTAATGATTA
ATTGGGAAGATATCTTTCATAGAAGGGGCGGACTTTCAGACGTACGTCGG
GTACTGGCTCGAAGTACGATGGCTTGGACCTTGAGTCTCCATCTTCCGCC
GTTGAACTGAATGCAAGGTAGCTCTTTTCAGATGCCTCTAAAATCGGATC
AAAATCAGCTGCTGGGGCTTTCTCTGTTTCAATACATGTCTTCTCCTCCT
CCTCTGTTTCTCCCCCTGACGGGGATGAGGCTTCCAAAGCCATGGCCAAA
GCCGCCTCCAAGCAATAAGAGCCCTTCCCCTCAATTGTTGCGTCGTCATG
ATATATTACGCTGGTAATTTTGCCGTTTCTTCTGGCTGAACTCATTTCTA
TAGGGTGTAGCGTGGAAAGGGTTGTGGGCTGAGGAGGAGGAGGTAGTCAA
AAGCGCAACTCGGACCAAAAAACTTCAACCGACGGAAACGTCACCCGATT
ACAACCATTATCATGCTGACAACACGCCTCTTAACCAATATAGCATTCCT
ATAGCTTACAAAGGACCTTTGTTTCCCTCTTGATATGTTATTGGTAGCCG
TCTTTATTGAATTGACGGCCATTAATCCCTGTCTGGACGCCGGGACTTGA
TCATTGCGTGACGCCGCCAGGTGTCGTTTTGCTGGATTTACCGTTTCCGA
CTCTCAAGACGTTCGGGCAAAGGACATTGTCGCCTGTCACCGATACCCTT
TAATACCTTCGATTTCGCTGCATCTGAATCGATAAACATGCATGTATGAA
GGCCGTAGCAACCCAACCAGTCCACCGCCCATTGCTGTTTTGCCGCCGTT
TCCTCGTGTTTACCGTCGTCCTCTCCCTGACGGTGCTGACTTGCATCTCT
CCTTCCTACAACGCCTTTGATCTTGTCCCCGCGCTCAGGACGGCAACGAG
CAGAGACAAAGGAATTAAAACTCGGGCGCTTCCTCCTCCTTCGCCGGCAC
CCCCGTTCCTCTCACAGCCATCCCTTCTCCTTCGCTTCGCCACTCCATCC
TCCCCTCCCTCTCCTCCCTCCCCCCACGAAGCGAAACGCCGCCGTCGAGC
CATGGCCCGTCAGAGGCGACGGAGACGGCACGCGGAGGAAAGAGCGGCGT
TCCAGAACCAAACCTTGCATGCTCCCGGTCTCGTCCCCTCGCAGGTGTAC
CTCTCCCCTCGCCACAAAAAGCGGCCTCCCTTCCCTGATCTTTCCACGAC
CCCGACCTCCTCCTCTTCCTCCCCCTCTTCCTCCGAGGAGGACGCCCAGG
ACCTGATCGTCCTCGAAGTGCCTGCCTGTCCTCCGTCCCTCCCTCCTTCG
CCCCCCCCCTCCCTCCCTCCTTCGCCCCCTCCTTCCCTCCCTCCTTCGCC
CCCTCCTTCCTCTCCTCCCTCCCCAGCACCCTACCGACGAAGCGGGGACT
GCCCCAACGTGCACTGGCGGGCGATACCCTTCCCCCACCTGCGACAACAC
CCCTCCTTCCAAGCCCTCCCTCCCTCCCGCCCTCCCTCCCGCCTGGCCGA
CCTCCGTTTCTTTCGACAGGACTCGTGGGAGTGGAGAGCCTTGCACGTGG
GGCGATTGACCACCTCCCGCGTGGGGGGCTTGCTGGGTGGGGACGGGGGG
AGAAGGGAGGGAGGGAAGGAGGGAGGGAGGAA
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protein sequence of rna5922

>rna5922-protein ID=rna5922-protein|Name=rna5922|organism=Nannochloropsis gaditana|type=polypeptide|length=101bp
MYTAHDTAYGAIGGSLLHFESRNEKEPPGNKSGEGSNTIAESFIFGRFAV
VKRCIRTFDSKENSIVEAQSPLWTHLRSLKIHKSKNHSLIAMRIHPRIPV
F
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mRNA from alignment at CM002467.1:105323..106146-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5922 ID=rna5922|Name=rna5922|organism=Nannochloropsis gaditana|type=mRNA|length=824bp|location=Sequence derived from alignment at CM002467.1:105323..106146- (Nannochloropsis gaditana)
ATGTACACCGCGCATGACACCGCCTACGGAGCCATTGGCGGCTCTCTCCT
GCGTCCACGGTTTCAGCAGGCATGACACGTGCGACCTAAAGGCATTGGCC
GGCGGATCTGTCCGTCGTGTGGACTCACAGGATTCCCTCCTTTTTCGGGG
GGTTGGTGCTAGTATCAGGCCACTTTGTCTCATAATTTCATTTTCATGGG
CGTCGGCATTCCCGGCGTCGGCCACGAGTTTGGTCGAGATACGCTTGCAT
TTCTTTGCATTTTTTTTTTTGCCTCTTTGCTCATCTCTACGTTAGTGGGT
TTTCGGTGTTTTTTTAAAGTGGGTTTTAAAAAGCCTTTTTTTATAGGAGG
GCTTCGTCACGCCGTCAAAATACACTCCGAAGGCGCCGAGAGCCCTATTT
CTGGGCGCGTTAAGCGCGAAAATGCCTGGTATTTTGGCCGTTTTAATGCC
ATATTTAAATGTCAACCGCTTTTTTCCCCATTTTAAAAGCCCATGTCGCG
TCTAACATTTTTTTGGGTGGCCAGATTTTGAATCCAGAAATGAAAAAGAA
CCTCCCGGAAACAAAAGCGGGGAAGGCTCTAATACGATAGCAGAAAGCTT
TATATTTGGAAGATTCGCGGTTGTAAAGCGATGCATTCGTACTTTTGACA
GCAAAGAAAATTCGATAGTTGAGGCCCAAAGTCCGCTGTGGACGCATTTG
CGAAGCCTTAAAATCCATAAATCAAAGAACCACAGCCTAATTGCTATGAG
AATACATGTGATACTTCAGTTCAATTGTTATTTAATTTCATATCAATGCC
TAGCCACGCATTCCTGTCTTTTAA
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Coding sequence (CDS) from alignment at CM002467.1:105323..106146-

>rna5922 ID=rna5922|Name=rna5922|organism=Nannochloropsis gaditana|type=CDS|length=918bp|location=Sequence derived from alignment at CM002467.1:105323..106146- (Nannochloropsis gaditana)
CCACGCATTCCTGTCTTTTAAATTTTGAATCCAGAAATGAAAAAGAACCT
CCCGGAAACAAAAGCGGGGAAGGCTCTAATACGATAGCAGAAAGCTTTAT
ATTTGGAAGATTCGCGGTTGTAAAGCGATGCATTCGTACTTTTGACAGCA
AAGAAAATTCGATAGTTGAGGCCCAAAGTCCGCTGTGGACGCATTTGCGA
AGCCTTAAAATCCATAAATCAAAGAACCACAGCCTAATTGCTATGAGAAT
ACATATGTACACCGCGCATGACACCGCCTACGGAGCCATTGGCGGCTCTC
TCCTGCCCACGCATTCCTGTCTTTTAAATTTTGAATCCAGAAATGAAAAA
GAACCTCCCGGAAACAAAAGCGGGGAAGGCTCTAATACGATAGCAGAAAG
CTTTATATTTGGAAGATTCGCGGTTGTAAAGCGATGCATTCGTACTTTTG
ACAGCAAAGAAAATTCGATAGTTGAGGCCCAAAGTCCGCTGTGGACGCAT
TTGCGAAGCCTTAAAATCCATAAATCAAAGAACCACAGCCTAATTGCTAT
GAGAATACATATGTACACCGCGCATGACACCGCCTACGGAGCCATTGGCG
GCTCTCTCCTGCCCACGCATTCCTGTCTTTTAAATTTTGAATCCAGAAAT
GAAAAAGAACCTCCCGGAAACAAAAGCGGGGAAGGCTCTAATACGATAGC
AGAAAGCTTTATATTTGGAAGATTCGCGGTTGTAAAGCGATGCATTCGTA
CTTTTGACAGCAAAGAAAATTCGATAGTTGAGGCCCAAAGTCCGCTGTGG
ACGCATTTGCGAAGCCTTAAAATCCATAAATCAAAGAACCACAGCCTAAT
TGCTATGAGAATACATATGTACACCGCGCATGACACCGCCTACGGAGCCA
TTGGCGGCTCTCTCCTGC
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Synonyms
Publications