rna5905, rna5905 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5905
Unique Name	rna5905
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	753
Alignment location	CM002467.1:46287..48574 +

Link to JBrowse

Properties


Property Name	Value
Product	u4 u6 small nuclear ribonucleoprotein prp4
Orig transcript id	gnl\|cribi\|Naga_101037g1.9836.mrna
Orig protein id	gnl\|cribi\|Naga_101037g1.9836
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:46287..48574 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101037g1	gene5700	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5905	rna5905-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24783.1	cds5890	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:46287..48574+
coding sequence from alignment at CM002467.1:46287..48574+

mRNA sequence

>rna5905 ID=rna5905|Name=rna5905|organism=Nannochloropsis gaditana|type=mRNA|length=753bp
ATGACTGGAGGGGTTGGAGGTGCGGTTCCCTCTTTCTTGCGTCTGTGTAT
TGCTCTCTCATTGTCTGGTGTGGCATCCGATGGAGTGTTGATTTGGGCTG
ATCAGGGTAGATTGTATAAACGAGGGGATCAGGAGTGTGTCTTGTGGCAA
ACAAAAAAATGGCGGAGAATAGACTCTTCTCATAGAGAGGGAAAGCATCT
TTCAAACCAGCGTGTGTACGAAGGACTTGAATCAAGAAGTTGTAAAAGAA
GAGAGGTGGAAGAGGAGTCAACGCGAAGATCCCCCCGCGGGACTCCGGGA
AAAATGAAAAATAACACGCAGGAGACAGCGAAACAAGAGACTGCAGGCTC
GTTGTTCGTGACGTCCCCTCCTCCGTGCTACACCCCCTCGAGTGCGCGTC
ATTTTATGGGCAATAACCCATCCACTCCCTCTAATTCCACCAATTTGGGC
GTGGATCAGGGCAACAGCAGCCACAATACTCCCCGTGCCAATCCACGGTC
ACCTTCTCCACGTGTGAATAAGGCCAAAGACGTCGAGGACGCTCTCCTTG
TCTCTCACGGAAGCAGCAGCAGCAGCAGGAATAGCAGCGTTGGCAGCATT
GACAAGTCGAACCCTTCCGCGGACGTAAAAGGGACAATCATGGAAGAAAA
GCCAATTTTCGCGACGACGACTGCCGAAGAGGTACGGGAAAAGAAGCCGG
GGTGGAAGAGGGAGCGTACTCAGGGAGGGGACGGAGGGGGAAGAGGAAGG
TAA

protein sequence of rna5905

>rna5905-protein ID=rna5905-protein|Name=rna5905|organism=Nannochloropsis gaditana|type=polypeptide|length=301bp
PRSRPRQAVGIPSRRGQGRAGAPNLHGPCRPPLCLCFPPVWSVLGHDELG
LYLEAVGRGERAGTAASGRALQGDARHSLPGRRRSGRDWRLCGYWACLGL
TVREEHLPAAWTHREGPLRRLEPLRVSFYWVLSCPHIDGLAPNSFLCRFS
PRAALPPPLALLPILGTVAATQHCTNSSSRSPLPPSLLPFLFPISYQIAT
GSSENVVKIWDVRRRQNIYTLPAHSALVAAVKYAPHDGEFLATASFDGKA
KVWGMRDFRLLRTLEGHEGRVVGVDWTPDGRRLVSCSHDRTFKVWADSKE
F

mRNA from alignment at CM002467.1:46287..48574+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5905 ID=rna5905|Name=rna5905|organism=Nannochloropsis gaditana|type=mRNA|length=2288bp|location=Sequence derived from alignment at CM002467.1:46287..48574+ (Nannochloropsis gaditana)
CCTCGGTCGCGCCCACGCCAGGCTGTGGGTATTCCCTCCCGAcggggaca
aggaagggcgggcgctCCAAACCTACATGGGCCATGCCGCCCGCCTCTCT
GCCTGTGCTTTCCACCCGTGTGGTCGGTACTTGGGCACGACGAGCTGGGA
CTATACCTGGAGGTAGGCGCCCGATGGAAGCCTGGTTGGGGCTGGAGAGA
TTGCGGGGCATGCGTGGATGGGCGaggcatttccttccctttttgccttc
tctttcgttcttccgaggggggggcacagCCAACGCTTCCAGAAAGTCCC
ATGCGCCGTATCCGCTGGCACCcacccgccctttcccccttcctccctcc
ctcctccctctttttccttgttCTCGTGCCTGGCTTTCTCCTAGGCTGTG
GGACGTGGAGAGCGGGCAGGAACTGCTGCTTCAGGACGGGCACTACAAGG
AGACGCACGCCATAGCCTTCCAggtaggggggaaagggaagagagagggg
tggaggagggggagaggatgccTGGGAGGACGGAACGGACTCTTGCcgat
gaaaggaggggggagcctGCGCTATGTCCGCATGCAGTGAGGGGACAGAT
GGTCCCTCGGTCGTGCCCGGGGCgcggcctccttctcctgcccgggCGTC
GCCACTCCCCGgcgccccttcctgcctttggcctccgtcttctcctcccg
agGCGACCCCCATCTTTTGGCCCGAGCGATGAGCGCTctcccccgttccc
cgcTGATTACgtactcccccccctccctctctacttCCCACCTGTCCCTC
GGGGAGTGAGGCGTGGTAGTAGGCACAAACCAGgacttcctccttgtccc
aaTCCCACCCACCCACGGGAACGTCGTGAACCCCCCCGCTTTATTCCTCT
ACTTTCCCCACAGGGAGACGGCGCTCTGGTCGTGACTGGAGACTATGCGG
GTATTGGGCATGTCTGGGACTTACGGTCCGGGAAGAGCATCTACCAGCTG
CATGtagggccggggggaggaggcggggggatggggagaaagggagggag
aggggagaggatggggagaaagggagggagaggggagagggtgatTTCTG
GACAGGCGCTTGTGTATGCGTGAGTCCGGGTGTAGGGAGGTATTTTTGGC
TGAGCTGTAGCGTGCCCTCGTCGTCACAGGGACACACCGAGAAGGTCCTT
TGCGCCGACTGGAGCCCCTCCGGGTGAGTTTTTACTGGGTTCTTTCATGC
CCGCACATAGATGGTCTTGCCCCTAACTCCTTCCTTTGCAGATTCTCTCC
TAGGGCCGCCCTACCACCGCCCTTGGCCCTTCTGCCCATTCTTGGAACCG
TCGCCGCAACGCAACATTGTACGAATTCCTCCTCACGAagccccctgcct
ccctccctccttccctttctctttcccatcAGCTACCAAATTGCCACGGG
CTCCTCGGAAAATGTCGTGAAGATCTGGGACGTACGGAGACGCCAGAACA
TCTACACGCTCCCGGCCCACAGCGCCCTTGTCGCCGCAGTCAAGTACGTT
CCCGGGGGGTGAGGTGATGACTTGGTGTGTAAAGCTCCATCGTGGTTGGT
CGCTTTTCTTTCATGACCTCTGGCCGAGTGCTCGAGGCTCTTGCATTTTT
TacattttcccctttctctcggCAGATATGCGCCGCATGACGGTGAATtc
ctggccacggcctccttcgATGGAAAAGCCAAGGTACGTGGCGACATCTG
AAGCACCAAACATGACGTTGTTGCCTTTTGAAGTTACATGCCTGTGATAG
ATGTTATTGGCAAAAAACACGTGCCATAACAACGTGCGTTCGGTCTGGTC
TTCAACGCCTTCTCTATCAATCTTAGTATGCTGAACACCGGCGCCCATGT
CGCCCCCGTACTTACTTTATGTCACAGGTGTGGGGTATGCGGGATTTCAG
GCTTCTACGGACGCTTGAAGGCCACGAAGGGCGAGTGGTTGGAGTGGACT
GGACACCCGACGGGAGGCGGCTGGTGTCTTGCTCGCACGACAGGACCTTC
AAGGTCTGGGCGGATAGTAAAGAGTTTTGAACAGCTTGCATCTAAAGTAA
ACTTAAAACCACTGGCAAAGCAATGGATGGAATCTCCTTTTTATTGCGGG
ATGACTCTTTCTTTAAGTTTGCGTTGTGAGGAGCTGAGTGGACGACAAAG
TGCATTGCAGGGCATCTTAGTGAGGAGGTTATGAGAGGAGATAACATTAC
CCAAAATAACCAATACGACGCGAGGCAGGCGCCTTCCA

Coding sequence (CDS) from alignment at CM002467.1:46287..48574+

>rna5905 ID=rna5905|Name=rna5905|organism=Nannochloropsis gaditana|type=CDS|length=5436bp|location=Sequence derived from alignment at CM002467.1:46287..48574+ (Nannochloropsis gaditana)
CCTCGGTCGCGCCCACGCCAGGCTGTGGGTATTCCCTCCCGAcggggaca
aggaagggcgggcgctCCAAACCTACATGGGCCATGCCGCCCGCCTCTCT
GCCTGTGCTTTCCACCCGTGTGGTCGGTACTTGGGCACGACGAGCTGGGA
CTATACCTGGAGGCTGTGGGACGTGGAGAGCGGGCAGGAACTGCTGCTTC
AGGACGGGCACTACAAGGAGACGCACGCCATAGCCTTCCAgGGAGACGGC
GCTCTGGTCGTGACTGGAGACTATGCGGGTATTGGGCATGTCTGGGACTT
ACGGTCCGGGAAGAGCATCTACCAGCTGCATGGACACACCGAGAAGGTCC
TTTGCGCCGACTGGAGCCCCTCCGGGTGAGTTTTTACTGGGTTCTTTCAT
GCCCGCACATAGATGGTCTTGCCCCTAACTCCTTCCTTTGCAGATTCTCT
CCTAGGGCCGCCCTACCACCGCCCTTGGCCCTTCTGCCCATTCTTGGAAC
CGTCGCCGCAACGCAACATTGTACGAATTCCTCCTCACGAagccccctgc
ctccctccctccttccctttctctttcccatcAGCTACCAAATTGCCACG
GGCTCCTCGGAAAATGTCGTGAAGATCTGGGACGTACGGAGACGCCAGAA
CATCTACACGCTCCCGGCCCACAGCGCCCTTGTCGCCGCAGTCAAATATG
CGCCGCATGACGGTGAATtcctggccacggcctccttcgATGGAAAAGCC
AAGGTGTGGGGTATGCGGGATTTCAGGCTTCTACGGACGCTTGAAGGCCA
CGAAGGGCGAGTGGTTGGAGTGGACTGGACACCCGACGGGAGGCGGCTGG
TGTCTTGCTCGCACGACAGGACCTTCAAGGTCTGGGCGGATAGTAAAGAG
TTTTGACCTCGGTCGCGCCCACGCCAGGCTGTGGGTATTCCCTCCCGAcg
gggacaaggaagggcgggcgctCCAAACCTACATGGGCCATGCCGCCCGC
CTCTCTGCCTGTGCTTTCCACCCGTGTGGTCGGTACTTGGGCACGACGAG
CTGGGACTATACCTGGAGGCTGTGGGACGTGGAGAGCGGGCAGGAACTGC
TGCTTCAGGACGGGCACTACAAGGAGACGCACGCCATAGCCTTCCAgGGA
GACGGCGCTCTGGTCGTGACTGGAGACTATGCGGGTATTGGGCATGTCTG
GGACTTACGGTCCGGGAAGAGCATCTACCAGCTGCATGGACACACCGAGA
AGGTCCTTTGCGCCGACTGGAGCCCCTCCGGGTGAGTTTTTACTGGGTTC
TTTCATGCCCGCACATAGATGGTCTTGCCCCTAACTCCTTCCTTTGCAGA
TTCTCTCCTAGGGCCGCCCTACCACCGCCCTTGGCCCTTCTGCCCATTCT
TGGAACCGTCGCCGCAACGCAACATTGTACGAATTCCTCCTCACGAagcc
ccctgcctccctccctccttccctttctctttcccatcAGCTACCAAATT
GCCACGGGCTCCTCGGAAAATGTCGTGAAGATCTGGGACGTACGGAGACG
CCAGAACATCTACACGCTCCCGGCCCACAGCGCCCTTGTCGCCGCAGTCA
AATATGCGCCGCATGACGGTGAATtcctggccacggcctccttcgATGGA
AAAGCCAAGGTGTGGGGTATGCGGGATTTCAGGCTTCTACGGACGCTTGA
AGGCCACGAAGGGCGAGTGGTTGGAGTGGACTGGACACCCGACGGGAGGC
GGCTGGTGTCTTGCTCGCACGACAGGACCTTCAAGGTCTGGGCGGATAGT
AAAGAGTTTTGACCTCGGTCGCGCCCACGCCAGGCTGTGGGTATTCCCTC
CCGAcggggacaaggaagggcgggcgctCCAAACCTACATGGGCCATGCC
GCCCGCCTCTCTGCCTGTGCTTTCCACCCGTGTGGTCGGTACTTGGGCAC
GACGAGCTGGGACTATACCTGGAGGCTGTGGGACGTGGAGAGCGGGCAGG
AACTGCTGCTTCAGGACGGGCACTACAAGGAGACGCACGCCATAGCCTTC
CAgGGAGACGGCGCTCTGGTCGTGACTGGAGACTATGCGGGTATTGGGCA
TGTCTGGGACTTACGGTCCGGGAAGAGCATCTACCAGCTGCATGGACACA
CCGAGAAGGTCCTTTGCGCCGACTGGAGCCCCTCCGGGTGAGTTTTTACT
GGGTTCTTTCATGCCCGCACATAGATGGTCTTGCCCCTAACTCCTTCCTT
TGCAGATTCTCTCCTAGGGCCGCCCTACCACCGCCCTTGGCCCTTCTGCC
CATTCTTGGAACCGTCGCCGCAACGCAACATTGTACGAATTCCTCCTCAC
GAagccccctgcctccctccctccttccctttctctttcccatcAGCTAC
CAAATTGCCACGGGCTCCTCGGAAAATGTCGTGAAGATCTGGGACGTACG
GAGACGCCAGAACATCTACACGCTCCCGGCCCACAGCGCCCTTGTCGCCG
CAGTCAAATATGCGCCGCATGACGGTGAATtcctggccacggcctccttc
gATGGAAAAGCCAAGGTGTGGGGTATGCGGGATTTCAGGCTTCTACGGAC
GCTTGAAGGCCACGAAGGGCGAGTGGTTGGAGTGGACTGGACACCCGACG
GGAGGCGGCTGGTGTCTTGCTCGCACGACAGGACCTTCAAGGTCTGGGCG
GATAGTAAAGAGTTTTGACCTCGGTCGCGCCCACGCCAGGCTGTGGGTAT
TCCCTCCCGAcggggacaaggaagggcgggcgctCCAAACCTACATGGGC
CATGCCGCCCGCCTCTCTGCCTGTGCTTTCCACCCGTGTGGTCGGTACTT
GGGCACGACGAGCTGGGACTATACCTGGAGGCTGTGGGACGTGGAGAGCG
GGCAGGAACTGCTGCTTCAGGACGGGCACTACAAGGAGACGCACGCCATA
GCCTTCCAgGGAGACGGCGCTCTGGTCGTGACTGGAGACTATGCGGGTAT
TGGGCATGTCTGGGACTTACGGTCCGGGAAGAGCATCTACCAGCTGCATG
GACACACCGAGAAGGTCCTTTGCGCCGACTGGAGCCCCTCCGGGTGAGTT
TTTACTGGGTTCTTTCATGCCCGCACATAGATGGTCTTGCCCCTAACTCC
TTCCTTTGCAGATTCTCTCCTAGGGCCGCCCTACCACCGCCCTTGGCCCT
TCTGCCCATTCTTGGAACCGTCGCCGCAACGCAACATTGTACGAATTCCT
CCTCACGAagccccctgcctccctccctccttccctttctctttcccatc
AGCTACCAAATTGCCACGGGCTCCTCGGAAAATGTCGTGAAGATCTGGGA
CGTACGGAGACGCCAGAACATCTACACGCTCCCGGCCCACAGCGCCCTTG
TCGCCGCAGTCAAATATGCGCCGCATGACGGTGAATtcctggccacggcc
tccttcgATGGAAAAGCCAAGGTGTGGGGTATGCGGGATTTCAGGCTTCT
ACGGACGCTTGAAGGCCACGAAGGGCGAGTGGTTGGAGTGGACTGGACAC
CCGACGGGAGGCGGCTGGTGTCTTGCTCGCACGACAGGACCTTCAAGGTC
TGGGCGGATAGTAAAGAGTTTTGACCTCGGTCGCGCCCACGCCAGGCTGT
GGGTATTCCCTCCCGAcggggacaaggaagggcgggcgctCCAAACCTAC
ATGGGCCATGCCGCCCGCCTCTCTGCCTGTGCTTTCCACCCGTGTGGTCG
GTACTTGGGCACGACGAGCTGGGACTATACCTGGAGGCTGTGGGACGTGG
AGAGCGGGCAGGAACTGCTGCTTCAGGACGGGCACTACAAGGAGACGCAC
GCCATAGCCTTCCAgGGAGACGGCGCTCTGGTCGTGACTGGAGACTATGC
GGGTATTGGGCATGTCTGGGACTTACGGTCCGGGAAGAGCATCTACCAGC
TGCATGGACACACCGAGAAGGTCCTTTGCGCCGACTGGAGCCCCTCCGGG
TGAGTTTTTACTGGGTTCTTTCATGCCCGCACATAGATGGTCTTGCCCCT
AACTCCTTCCTTTGCAGATTCTCTCCTAGGGCCGCCCTACCACCGCCCTT
GGCCCTTCTGCCCATTCTTGGAACCGTCGCCGCAACGCAACATTGTACGA
ATTCCTCCTCACGAagccccctgcctccctccctccttccctttctcttt
cccatcAGCTACCAAATTGCCACGGGCTCCTCGGAAAATGTCGTGAAGAT
CTGGGACGTACGGAGACGCCAGAACATCTACACGCTCCCGGCCCACAGCG
CCCTTGTCGCCGCAGTCAAATATGCGCCGCATGACGGTGAATtcctggcc
acggcctccttcgATGGAAAAGCCAAGGTGTGGGGTATGCGGGATTTCAG
GCTTCTACGGACGCTTGAAGGCCACGAAGGGCGAGTGGTTGGAGTGGACT
GGACACCCGACGGGAGGCGGCTGGTGTCTTGCTCGCACGACAGGACCTTC
AAGGTCTGGGCGGATAGTAAAGAGTTTTGACCTCGGTCGCGCCCACGCCA
GGCTGTGGGTATTCCCTCCCGAcggggacaaggaagggcgggcgctCCAA
ACCTACATGGGCCATGCCGCCCGCCTCTCTGCCTGTGCTTTCCACCCGTG
TGGTCGGTACTTGGGCACGACGAGCTGGGACTATACCTGGAGGCTGTGGG
ACGTGGAGAGCGGGCAGGAACTGCTGCTTCAGGACGGGCACTACAAGGAG
ACGCACGCCATAGCCTTCCAgGGAGACGGCGCTCTGGTCGTGACTGGAGA
CTATGCGGGTATTGGGCATGTCTGGGACTTACGGTCCGGGAAGAGCATCT
ACCAGCTGCATGGACACACCGAGAAGGTCCTTTGCGCCGACTGGAGCCCC
TCCGGGTGAGTTTTTACTGGGTTCTTTCATGCCCGCACATAGATGGTCTT
GCCCCTAACTCCTTCCTTTGCAGATTCTCTCCTAGGGCCGCCCTACCACC
GCCCTTGGCCCTTCTGCCCATTCTTGGAACCGTCGCCGCAACGCAACATT
GTACGAATTCCTCCTCACGAagccccctgcctccctccctccttcccttt
ctctttcccatcAGCTACCAAATTGCCACGGGCTCCTCGGAAAATGTCGT
GAAGATCTGGGACGTACGGAGACGCCAGAACATCTACACGCTCCCGGCCC
ACAGCGCCCTTGTCGCCGCAGTCAAATATGCGCCGCATGACGGTGAATtc
ctggccacggcctccttcgATGGAAAAGCCAAGGTGTGGGGTATGCGGGA
TTTCAGGCTTCTACGGACGCTTGAAGGCCACGAAGGGCGAGTGGTTGGAG
TGGACTGGACACCCGACGGGAGGCGGCTGGTGTCTTGCTCGCACGACAGG
ACCTTCAAGGTCTGGGCGGATAGTAAAGAGTTTTGA

Synonyms

Publications