rna5901, rna5901 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5901
Unique Name	rna5901
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1239
Alignment location	CM002467.1:32510..35692 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100725g2.711.mrna
Orig protein id	gnl\|cribi\|Naga_100725g2.711
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:32510..35692 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100725g2	gene5696	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5901	rna5901-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24787.1	cds5886	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:32510..35692+
coding sequence from alignment at CM002467.1:32510..35692+

mRNA sequence

>rna5901 ID=rna5901|Name=rna5901|organism=Nannochloropsis gaditana|type=mRNA|length=1239bp
GTCGAAGCCCGCCATCTCTCTCCATATAGCTAAGCAATGCGATCATCGAT
TCACTCCAAGGCTCCCTTTTTTTCTTCACAAAAAGCATGAATGTCCGCAT
CGTTTTAAAGAATGGGCAGGAGCTTGATGCACCCGTTGAGGCGGCTTTGC
TCCTTCCGTCGACCCTCCTAGCCGGTATGCTGGAAGCGGAGGAAGATTGC
GGAGAAGATGAGCGTACATTGGAGCTTCCTTCCGTGGAGAAGACGGCCTT
TGAGTACGTCATGCGATTTTTGAGAGTGCACGCGGCAACCCCCCTGCAGG
ATATCCCCAAGCCGATCCTAGAAAACAGTCTGGGTGAGATAGTGCAAAAG
GAGTACAGCGAATTTATCGAGTCCTTACCCTATCGGGACCTTGTTCAGGT
CATGGAGCTTGCCCATTTTCTGGTCCTGGATCCCCTCCTTCGCCTCTCCC
TTGCCCGGGTCCACTTTATATTGAAAGCGACGCCTTTGGAGGAATTCAAG
CGACTTTTCCTCTTTCAAAACGATCTGACTCAGGAGGAGGAGAAGGTAAG
GAGGGAGACACACAGTATCCTTTCGATGGGAGGATGAAAAGATGCATACA
CTGAAGCAAGAATTTAGATGTATATATATACATTGAAGCAAAAGTATAAA
CATTTGAATATGTCTGAATGTTGCTTCGATAGGTAAATTTTCCTCATTCC
AATCTATATGATCTTTTTTCCTAACCCGCAGGAGCTCCGACGAGAATACT
TAGAGGAGATCAAGGCGCGAAATGCACACCTCTTCAAGCTCAACAGCCAA
GGAGAGCAGACCAGCACGGCACAACCGTGAGAAAAGAATATGTTAATAGA
ATAGAAGCAAGCAGGCGCTCCGGTGGGATCAGATTCAATAAAGCCTTTTT
GAAGGAACAGAAATACTTGTGATGACAAGGCCGTTCGTGGGTGCAAATTC
AAAAATTCTCGATCATACAAGGAAAGATAGCTCTTCTTGACGGGCCGTAA
GCAGGCGTACTTGTGCGGAGAGTGTGGCGTCACTTGACGCCGAAGAGTTT
GCAAGATGGACAATGCAGGGGGGATTGTGAAAGCCTCGTGATTGGACAGC
CGAAGTACGCACTATACGAACTTTTCGCATTTAATTGGATACAAATTATT
GCTGTCGTACATTTTCAAATGGCAAGGAAAAAGAGACACATCGTCTATAA
AATAAAATGCGAAGAAAAATTAATTTCAAGCATCGTTTG

protein sequence of rna5901

>rna5901-protein ID=rna5901-protein|Name=rna5901|organism=Nannochloropsis gaditana|type=polypeptide|length=295bp
MFRGRASTARQRKSSVIDSSIECSRVMFCKLPVFLVILSFSCPPPPHSGT
GPPANVTSHLQLHLHRIHAKVLTAIYHLPYITKTGFVAQPQRWKTVASLR
MALRPAGASSADMLRLIITGLRTLLLLLSLWELALSNFFLLSPHIVSGPT
IQAWSFTSPASTSTPLSPSSTSASPQESIACSLFYYKLCAASSVLVGRGL
LATSLGLAIALVLLLFRVSWDACTPIGGPWKDLFVPRLGAEEGPEDSPSP
FLLPALPPALLWIHRVRGRGDQGREGGGRYLRAWEWTTARVAAAG

mRNA from alignment at CM002467.1:32510..35692+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5901 ID=rna5901|Name=rna5901|organism=Nannochloropsis gaditana|type=mRNA|length=3183bp|location=Sequence derived from alignment at CM002467.1:32510..35692+ (Nannochloropsis gaditana)
TGGTATTCTTGTCGtcagcgagggaggcagagcgaCATGAGAAGCCCCGA
GAAGTGGAAGGGCGGAAATACCCTATGCATCACACGAAATAATGTTCCGG
GGACGCGCTTCCACCGCGCGTCAACGCAAGAGTAGTGTAATCGACTCATC
CATTGAATGCAGTCGGGTGATGTTCTGCAAATTACCTGTATTTCTGGTGA
TTTTAAGCTTttcatgtcctccacctccccactCGGGGACTGGCCCTCCG
GCGAATGTTACATCACATCTACAGCTTCACCTTCATCGGATTCATGCAAA
AGTGCTCACGGCTATCTACCATCTCCCATATATAACAAAAACAGGATTTG
TAGCGCAACCACAGAGGTGGAAGACTGTAGCGTCACTCAGAATGGCGCTA
CGCCCTGCGGGGGCCTCGAGTGCTGACATGCTTCGTCTCATCATCACCGG
CCTTCGgactcttctcctcctcctctccctatGGGAACTGGCACTCTCGA
ACTTCTTCCTGCTCTCACCACACATAGTGTCAGGCCCGGTGAGTGTCGGT
ttggaaatgaaggaggcaTGCGGGACAAATGAAAGGGGTCCGCAAATAAG
ACAGCATGCCAtcattcttctcccctctctcatGTCTGATTTCGCCATCA
TTCATGAAGAACCCTGAAGGGAAATGGCCACATCCGGTGGGAGACGGCAT
GCCTCTGATTCCTCACGCTTCGTCTTCAtttttctccatccctccgtcAG
ACTATACAGGCCTGGAGCttcacctccccggcctctaCCTCgacccccct
ctccccctcctcgacttccgcttccccccaggAAAGTATTGCCTGTAGCC
TCTTCTACTACAAGCTGTGTGCAGCTTCTTCGGTTCTGGTGGGACGGGTG
CGTAACACAACTTCGCCTCTGCTcgttacctccctccctctctctttccc
ggCGTCCTCTTTTATTGGAGATGCGGCCTCCCCGCGGGGCGTTGGCTCAT
TTCCTCGGAGTCTGCTGCTTTTTGCTATCTCGATGGAGTCTTCGcgcttc
tctcctctcttcctcacctccctcccttccctccctgcctccctccgccc
cccccctcccctgcagGGGCTGCTGGCCACCAGCCTCGGTCTAGCGATAG
CGCTcgtcctgctccttttccGGGTATCATGGGACGCTTGTACTCCCATC
GGCGGCCCTTGGAAGGTGGGAATATGTacaagaggggggagggagggaaa
aagggagggagggagggagggagggaggaccatCCTCTGGGGtctcacgc
cctccttggccccaCCTGGTGACCTCTCTAACCCCATGCCCCACACCTCC
AGTCACGATAACGATCGACTCTTGACTGCAACATGTGTGCATTTCCTTAA
AGGATTGACGCTTACCCCCTATTGTGTTTCGATGACAGGATCTCTTTGTT
CCACGTCTGGGTGCCGAGGAAGGGCCGGAGGACTcaccctcgcccttcct
ccttcccgccctccctcccgccctcctctggATCCACCGGGTCCGGGGAC
GAGGGGATCAGggtagagaaggaggagggcggtacCTGCGGGCCTGGGAG
TGGACGACGGcgcgggtggcggcggcggggtaatgtgggagggagggaga
gagaggagaggtagaagaaagggagggcgtgaaaggagagcaagaaaggc
gagggggcagaagagaggagggagaaagggaaggcctGGTGGCCCTGGAA
ATGTATTGGCGATGTGAATAAGCGTCTTTGAATGAAAGTAAGTGAGTCAA
TCAGAAATCGAGGGTCTCGTACGAAGGGAGCTGGATCCACGGGCGTGACG
GAGAGGGATTTGGTTTCCAGAAAAGagcaaagagaggggaagaaaagcat
tGACGCGAGCTCCGTTGGATTTTTCGTCGCGGGAAGCGGCACgacgggcg
gaagggatTAGGGTAAAAGGGTGATCCCGAGAGGATTGTGCTGGATTAGC
GGTTTCTCAAAAGCAATGTAACACGATACGCCCCACTGGCGGCTGGTGGG
AGGTTCCGaaggggacaagggaggaaggagggacaggaaagTTCAGACGA
TAAGCATACCCCACAAGCCAAATCAAGCACTATCAATACACCCCACCCAG
CGAAAGCCTTTATGTGTGCAGCGAACCTATCTGGCACGGAGCCATGCGGC
AACCGCGTTAGTCGTGACATGTCTTTCTTCAGGCacctccaccgtccctc
tccgcctggaCACCATCACAGCTATCGCCGGATAAATGACCATGTTTGAC
ATAAAATCTCTCAGATGCGACAGGATCAAAAGGCCGTTCCACCACCTCAC
GCGTTTCTATCTGTATCGGAAAGGCATTGCACGGGCCGGGCGTGGCGAGC
AGACAGCCGGAGCTGCCACAAGCAAGCTTaccctgcccccgccgcgGGCG
TCAGGGCCCAAGCCGAAGCAAGCGACCATCAAGAGTAGGACGCACTTACC
CGGACATTGACGCCATGGTCCCCACACTCCCCtacccctcctgccccagc
ctctgtctctccttccctccctctctcccttcctctcttcctccctccct
cgcctagTCCTCCCCTCACCACAAAGCAAGGACTTGGGCTCTATACCGGC
CCAGCTGCCCGCTCTTCGGTCCACAGGCGGAAAATTTCTCTGACTCTCCA
ATAAAAAAAGACACGTACACATACAGACACGCACTATCACTCACACGAAC
GCTCCTCTATATACACACCGGCCATGCGCGCGTCGCCCTCTCTGCTTCTA
CTTCCACTGCTCATTGTATCATATCTTGAAACATCGACAGCTTCCCTGAC
GCCGTGCTCTCACACCCAAAGGATTTAAAACTCAGGCGACAACGCGCACT
CcgtgcccctctcctcccaaggCTGttatcctctctcccttggcCGCGCT
TCAACATCCTCTCCCCagactctccctcccttcctccgtcccttcccccc
tcacgCGTACAGGGACTCGATCAAGGCCGCATGCTTCTTGGCTACCACGC
TCCTCTTCAGCTTCAGCGTCGGCGTCaggtcgccctccttctcgctgaAG
TCCTTCTCGAGCAGGGTGTACTTCTGCACGTATTGGGCCCGACTGGTGGC
CTGGCTGTTGGCCGCCTatagaggaagaaggga

Coding sequence (CDS) from alignment at CM002467.1:32510..35692+

>rna5901 ID=rna5901|Name=rna5901|organism=Nannochloropsis gaditana|type=CDS|length=3552bp|location=Sequence derived from alignment at CM002467.1:32510..35692+ (Nannochloropsis gaditana)
ATGTTCCGGGGACGCGCTTCCACCGCGCGTCAACGCAAGAGTAGTGTAAT
CGACTCATCCATTGAATGCAGTCGGGTGATGTTCTGCAAATTACCTGTAT
TTCTGGTGATTTTAAGCTTttcatgtcctccacctccccactCGGGGACT
GGCCCTCCGGCGAATGTTACATCACATCTACAGCTTCACCTTCATCGGAT
TCATGCAAAAGTGCTCACGGCTATCTACCATCTCCCATATATAACAAAAA
CAGGATTTGTAGCGCAACCACAGAGGTGGAAGACTGTAGCGTCACTCAGA
ATGGCGCTACGCCCTGCGGGGGCCTCGAGTGCTGACATGCTTCGTCTCAT
CATCACCGGCCTTCGgactcttctcctcctcctctccctatGGGAACTGG
CACTCTCGAACTTCTTCCTGCTCTCACCACACATAGTGTCAGGCCCGACT
ATACAGGCCTGGAGCttcacctccccggcctctaCCTCgacccccctctc
cccctcctcgacttccgcttccccccaggAAAGTATTGCCTGTAGCCTCT
TCTACTACAAGCTGTGTGCAGCTTCTTCGGTTCTGGTGGGACGGGGGCTG
CTGGCCACCAGCCTCGGTCTAGCGATAGCGCTcgtcctgctccttttccG
GGTATCATGGGACGCTTGTACTCCCATCGGCGGCCCTTGGAAGGATCTCT
TTGTTCCACGTCTGGGTGCCGAGGAAGGGCCGGAGGACTcaccctcgccc
ttcctccttcccgccctccctcccgccctcctctggATCCACCGGGTCCG
GGGACGAGGGGATCAGggtagagaaggaggagggcggtacCTGCGGGCCT
GGGAGTGGACGACGGcgcgggtggcggcggcggggtaaATGTTCCGGGGA
CGCGCTTCCACCGCGCGTCAACGCAAGAGTAGTGTAATCGACTCATCCAT
TGAATGCAGTCGGGTGATGTTCTGCAAATTACCTGTATTTCTGGTGATTT
TAAGCTTttcatgtcctccacctccccactCGGGGACTGGCCCTCCGGCG
AATGTTACATCACATCTACAGCTTCACCTTCATCGGATTCATGCAAAAGT
GCTCACGGCTATCTACCATCTCCCATATATAACAAAAACAGGATTTGTAG
CGCAACCACAGAGGTGGAAGACTGTAGCGTCACTCAGAATGGCGCTACGC
CCTGCGGGGGCCTCGAGTGCTGACATGCTTCGTCTCATCATCACCGGCCT
TCGgactcttctcctcctcctctccctatGGGAACTGGCACTCTCGAACT
TCTTCCTGCTCTCACCACACATAGTGTCAGGCCCGACTATACAGGCCTGG
AGCttcacctccccggcctctaCCTCgacccccctctccccctcctcgac
ttccgcttccccccaggAAAGTATTGCCTGTAGCCTCTTCTACTACAAGC
TGTGTGCAGCTTCTTCGGTTCTGGTGGGACGGGGGCTGCTGGCCACCAGC
CTCGGTCTAGCGATAGCGCTcgtcctgctccttttccGGGTATCATGGGA
CGCTTGTACTCCCATCGGCGGCCCTTGGAAGGATCTCTTTGTTCCACGTC
TGGGTGCCGAGGAAGGGCCGGAGGACTcaccctcgcccttcctccttccc
gccctccctcccgccctcctctggATCCACCGGGTCCGGGGACGAGGGGA
TCAGggtagagaaggaggagggcggtacCTGCGGGCCTGGGAGTGGACGA
CGGcgcgggtggcggcggcggggtaaATGTTCCGGGGACGCGCTTCCACC
GCGCGTCAACGCAAGAGTAGTGTAATCGACTCATCCATTGAATGCAGTCG
GGTGATGTTCTGCAAATTACCTGTATTTCTGGTGATTTTAAGCTTttcat
gtcctccacctccccactCGGGGACTGGCCCTCCGGCGAATGTTACATCA
CATCTACAGCTTCACCTTCATCGGATTCATGCAAAAGTGCTCACGGCTAT
CTACCATCTCCCATATATAACAAAAACAGGATTTGTAGCGCAACCACAGA
GGTGGAAGACTGTAGCGTCACTCAGAATGGCGCTACGCCCTGCGGGGGCC
TCGAGTGCTGACATGCTTCGTCTCATCATCACCGGCCTTCGgactcttct
cctcctcctctccctatGGGAACTGGCACTCTCGAACTTCTTCCTGCTCT
CACCACACATAGTGTCAGGCCCGACTATACAGGCCTGGAGCttcacctcc
ccggcctctaCCTCgacccccctctccccctcctcgacttccgcttcccc
ccaggAAAGTATTGCCTGTAGCCTCTTCTACTACAAGCTGTGTGCAGCTT
CTTCGGTTCTGGTGGGACGGGGGCTGCTGGCCACCAGCCTCGGTCTAGCG
ATAGCGCTcgtcctgctccttttccGGGTATCATGGGACGCTTGTACTCC
CATCGGCGGCCCTTGGAAGGATCTCTTTGTTCCACGTCTGGGTGCCGAGG
AAGGGCCGGAGGACTcaccctcgcccttcctccttcccgccctccctccc
gccctcctctggATCCACCGGGTCCGGGGACGAGGGGATCAGggtagaga
aggaggagggcggtacCTGCGGGCCTGGGAGTGGACGACGGcgcgggtgg
cggcggcggggtaaATGTTCCGGGGACGCGCTTCCACCGCGCGTCAACGC
AAGAGTAGTGTAATCGACTCATCCATTGAATGCAGTCGGGTGATGTTCTG
CAAATTACCTGTATTTCTGGTGATTTTAAGCTTttcatgtcctccacctc
cccactCGGGGACTGGCCCTCCGGCGAATGTTACATCACATCTACAGCTT
CACCTTCATCGGATTCATGCAAAAGTGCTCACGGCTATCTACCATCTCCC
ATATATAACAAAAACAGGATTTGTAGCGCAACCACAGAGGTGGAAGACTG
TAGCGTCACTCAGAATGGCGCTACGCCCTGCGGGGGCCTCGAGTGCTGAC
ATGCTTCGTCTCATCATCACCGGCCTTCGgactcttctcctcctcctctc
cctatGGGAACTGGCACTCTCGAACTTCTTCCTGCTCTCACCACACATAG
TGTCAGGCCCGACTATACAGGCCTGGAGCttcacctccccggcctctaCC
TCgacccccctctccccctcctcgacttccgcttccccccaggAAAGTAT
TGCCTGTAGCCTCTTCTACTACAAGCTGTGTGCAGCTTCTTCGGTTCTGG
TGGGACGGGGGCTGCTGGCCACCAGCCTCGGTCTAGCGATAGCGCTcgtc
ctgctccttttccGGGTATCATGGGACGCTTGTACTCCCATCGGCGGCCC
TTGGAAGGATCTCTTTGTTCCACGTCTGGGTGCCGAGGAAGGGCCGGAGG
ACTcaccctcgcccttcctccttcccgccctccctcccgccctcctctgg
ATCCACCGGGTCCGGGGACGAGGGGATCAGggtagagaaggaggagggcg
gtacCTGCGGGCCTGGGAGTGGACGACGGcgcgggtggcggcggcggggt
aa

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