rna590, rna590 (mRNA) Nannochloropsis gaditana

Overview
Namerna590
Unique Namerna590
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1759
Alignment locationCM002455.1:1477707..1478567 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101255g1.8344.mrna
Orig protein idgnl|cribi|Naga_101255g1.8344
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1477707..1478567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101255g1gene568Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna590rna590-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30081.1cds590Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna590 ID=rna590|Name=rna590|organism=Nannochloropsis gaditana|type=mRNA|length=1759bp
CTTGTCAGCCGCTTGGTCTGAGGTCTTTGTGAACGTCTTCTCGCGCGCAA
GCCCCCACACCGCGGGACGTCGCATGGTTACATGTGCACGTGCTTTTTGT
TTCTTATGTATGGGGGCCTGAAGGATCTGAGGCTGGGTTTAGTGCCGCAG
GTGTGCTTGTTGTATCCAAAGTGCTTTTTTCTTCTTCAACTTCTCGTTTA
CATGCCCCTTGGGTGGCGAGAAAGGCTGCCAAGCCTGAAACTTGTTTCAC
AGATTCTTTCAAAACACACAGTTGTAAAATAACGGCCTTAGTCTCATGGT
GGCCTTGGTATTTTTCTATTATTCACGTTGTCTTTCGAAGAGATTTTCCT
CAGAGCCCTCTCTCCCCTTCTTCCTGTTCCAAAACTTCAAGCTCGCATCC
AGAAATCCGAGGCCCAGCAGAAACACCGGTCATTTGATGCGCACACGATT
ATACACACATTATCACCAATCCACGACGCTAGTGACACACATATGTCGGG
TCAAGCCATCGACGGTGGTGGAATGACCTCAACAACGTCCTACCATCCTC
TGCAGGAGCAGCCGGTCCATCCACAGCACCAACAGCCACCCCCTCACCAC
CACCCCCACCACCCCCACTACCCACTCAGTCATCATCAACAATGTCAATC
GGCTCCACAGACAGCAGGGTCGCTCTCAACGGGGCCTGGGTTTAATTTTC
GGGGGCCTGTCTACCCCCATATCATGCCTCAACATTCTCTGTACCTCTCT
GCATCTGGGCCCCAACTCAATGGCAGAGAGCGAGACCGGCCGGAAAACGG
CATGCTCTATCCAGAATATTTCTCGCCCAATCCTTCTTCACATCCCCGCG
CCCATGCCTACAATGGGATCTCGGCCTCGGGGGGTATGGTTGCCTCGTCA
GCTCCTGTTCCCTCCGCCTCTGTGCCTGCCCGGCCATTGGCAAGCCCAAC
TTCCACGTTGCCTGGAGGCTACTGCCCTGCTCCATGTGCGCTGCCTCCTT
CCTCTCACTCCTACTCGCTCCAGGAGGGAGGACTGGTCAAGGCCCCTCTC
CCGCCTTCACTGGCGTCTGGGGCGTCCCCCCCCTTGTCCCCCCCCCCTAG
CTCGACTTGCACGAATTCTGTGGCTGATCCTTTGCAGCACCATGCCGTGT
ATCAAGCACAGTACCTTGTTAAGCCTGGCCATCCTGGAGGAGAAAAAGGA
AGTGGGAGAGGCGAAGGAGAGAAGGAGGGGGGCCGGGGGCAACAGCACAG
AACGACACCTTCGTCACCACCACCACCACAGCAGCAGCAGCAGCAGCAGC
AGCAACAACAACAACAACAACAACAGCAACAATCTCAACAGCAACAACAA
CAACAGCAACAACAACAGCAGCAACAACAACAGCAACAACAACAGCAGCA
ACAACAATCACAACAACAACAACAACAACAACAGCAACATATCGACGAAC
AGCAACAGCAGCAGTCACACCAGCATCCGCACAGCTCGAGGACGACGGCA
TGCGCCAGTCCCGCTATCATGAAAGAACGCCGGCAGAAAGGTTGGTGGCG
CAATGGTCGCTGGTCCGATCAAGAATTAAGGTATCTGGACGTGCTCAAGC
AAGACTTCGAGGACGGTACGTGCCAGATTGTTTCCTTTCCCTCCTACCCC
TCCCTCTCTGCCTCTCCCCTTGCTTGGCAGCTCTTGCTCCCTTCCTTCCT
CCCTGTCCCCCGGCCCTGACTGCTCTCTCCTGTCCACGCGAGATTCTCTC
ACCGTTCCC
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protein sequence of rna590

>rna590-protein ID=rna590-protein|Name=rna590|organism=Nannochloropsis gaditana|type=polypeptide|length=286bp
MEGGRVEEGRVSVFSGRGGGDGEGEQGGAEGGREGRLEEGEGGGNLSESG
ETRVSVGPPKKKRLLEGRKEGGREGGREGKEDGAGRNEAERESAMSMIML
TGIKALPALPLKEAVALGEEGETTGGKENERVGETGKDEKEKLMSPDYWQ
GREEEEGEGGKEGKRKTKGRKAEKEGEGRRRGEEGGSPSGALEKEKEGGG
KSAGGPRGKEGKEGKEGKEGKERGENSASLPLLKRGRPLASSVPPPVTAS
AGEEGGTGGGAGGWSLSCSSLSSTSSMSAASRLSSF
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mRNA from alignment at CM002455.1:1477707..1478567+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna590 ID=rna590|Name=rna590|organism=Nannochloropsis gaditana|type=mRNA|length=861bp|location=Sequence derived from alignment at CM002455.1:1477707..1478567+ (Nannochloropsis gaditana)
atggaaggagggagggtcgaggaagggagggtttcGGTCTTCTCCggtag
gggcgggggcgatggagaaggcgagcagggaggggcggagggcgggaggg
agggaaggctggaggaaggggaggggggggggaatctGTCGGAGAGTGGG
GAGACGCGGGTGAGTGTGGGCCCAccgaagaagaagcggttgctggaagg
aaggaaggagggagggagggagggagggagggaggggaaggaggacgggg
cgggcagAAAtgaagcagagagggaaagcgccATGTCGATGATCATGTTG
ACCGGGATTAAAGccctgcctgccctccctcttaaggaggcagtggcttt
gggagaagaaggagaaacgacgggggggaaagagaacgaaagggtgggag
aaacagggaaggatgagaaggagaagctgaTGTCCCCTGACTATTGGcaa
ggccgggaggaggaggaaggggagggagggaaggagggaaagaggaagac
gaaggggaggaaggcggagaaggaaggagagggacgacggagaggggagg
aggggggctcGCCCTCGGGCGCtttggaaaaggagaaggagggaggaggg
aaaagtgcGGGAGGCCCgcgcgggaaggaggggaaggaagggaaggaggg
gaaggaagggaaggagcgaggagagaacagtgcctccctccccctgctca
aGAGGGGGCGGCCACtggcttcctccgtcccgcccccAGTGACGGCcagc
gcgggggaggaaggaggtaccgggggaggggcggggggatggtccctttc
ctgctcctccctctcctccacgtcctcgatgTCTGCCGCCAGTCGGCTGT
CGTCGTTctaa
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Coding sequence (CDS) from alignment at CM002455.1:1477707..1478567+

>rna590 ID=rna590|Name=rna590|organism=Nannochloropsis gaditana|type=CDS|length=861bp|location=Sequence derived from alignment at CM002455.1:1477707..1478567+ (Nannochloropsis gaditana)
atggaaggagggagggtcgaggaagggagggtttcGGTCTTCTCCggtag
gggcgggggcgatggagaaggcgagcagggaggggcggagggcgggaggg
agggaaggctggaggaaggggaggggggggggaatctGTCGGAGAGTGGG
GAGACGCGGGTGAGTGTGGGCCCAccgaagaagaagcggttgctggaagg
aaggaaggagggagggagggagggagggagggaggggaaggaggacgggg
cgggcagAAAtgaagcagagagggaaagcgccATGTCGATGATCATGTTG
ACCGGGATTAAAGccctgcctgccctccctcttaaggaggcagtggcttt
gggagaagaaggagaaacgacgggggggaaagagaacgaaagggtgggag
aaacagggaaggatgagaaggagaagctgaTGTCCCCTGACTATTGGcaa
ggccgggaggaggaggaaggggagggagggaaggagggaaagaggaagac
gaaggggaggaaggcggagaaggaaggagagggacgacggagaggggagg
aggggggctcGCCCTCGGGCGCtttggaaaaggagaaggagggaggaggg
aaaagtgcGGGAGGCCCgcgcgggaaggaggggaaggaagggaaggaggg
gaaggaagggaaggagcgaggagagaacagtgcctccctccccctgctca
aGAGGGGGCGGCCACtggcttcctccgtcccgcccccAGTGACGGCcagc
gcgggggaggaaggaggtaccgggggaggggcggggggatggtccctttc
ctgctcctccctctcctccacgtcctcgatgTCTGCCGCCAGTCGGCTGT
CGTCGTTctaa
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Synonyms
Publications