rna5898, rna5898 (mRNA) Nannochloropsis gaditana

Overview
Namerna5898
Unique Namerna5898
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length611
Alignment locationCM002467.1:24884..26168 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100912g1.9915.mrna
Orig protein idgnl|cribi|Naga_100912g1.9915
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:24884..26168 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100912g1gene5693Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5898rna5898-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24790.1cds5883Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5898 ID=rna5898|Name=rna5898|organism=Nannochloropsis gaditana|type=mRNA|length=611bp
ATGGAGCGCGAGGCGGTGGTGGAGCAAGCCCGCTTCCTCCAGTCCCTCTA
CGACAACGAGACCGCCCGCTTTGAGGCTGGCATGCGTAAGATGGTGCGCA
TGCTCAAGGAGGAGGAGGCGGCCCATCTCGCGAAGGAGGCGAAGGCCCGC
ACCGAGACGCAAGATGTCATCCGCGAGTACACAGAGGCCCTAAAGGCTAA
GGACGGTCTCCTTGAGGCCTGGAACAAGAAGGATGAGGAGTGGGAGGCCG
CGCGGGAGGGATGGAGGGAGGAGCGGGCGGAGGGGGAGGCGGCCCTTCTG
AAGGCCTTGGAGGTAGTGGCGCGGTTGGAGGGGGAAGTGGCGCGGAGGGA
GCAGGAGAATGCCGCCTGGGCTCGAAAGGCGGAGGAGAAACAAAAGCGAA
TCAAAGAGCTCCAGAGCACCATCTCCTCCCTGGAGGCCGCCAAGAGAACC
GCCGGGAAGGAGGCAGCTCGCCTCTTGGCCCTCACTCAGGAGGAGCACGC
CCGCGCCGCCGCGAGCTGGCAGGCCGAGATGGCTTCCGCACGCGTCCAGG
CGAGGGTGAGAAACCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCCCC
TCCTACTCGCC
back to top

protein sequence of rna5898

>rna5898-protein ID=rna5898-protein|Name=rna5898|organism=Nannochloropsis gaditana|type=polypeptide|length=341bp
MYQRLPSLLLLLPVLSAVDAFHSLFPNRAFSRLSRQSKPLYSSTFASTTI
SSPSSHSPSVSEKKRDSVQVLEYLQSFLTSAPTASSSTTTTSSATPASLP
PLDPNLPSDVKAALDDVLAMVQAREEQVRNGDDGARAVKEWKTRAYRLEQ
DLQATRRNLKEITNIRRDLAHRLQQAQTVAEAGRRGNEERVRGMEEELAE
KKRQLTELQEREASLAQAREAARRETDSLLAILSPGQEASRREALEARLA
SLSDSLPASRPLPEVEELVGEGEREAYRSWYARCFSSLEQDMKGVEDGAL
RAMEEMRGEVKRMEGCVRAAEEGEGGRRGGGGSGKVGSGGG
back to top

mRNA from alignment at CM002467.1:24884..26168-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5898 ID=rna5898|Name=rna5898|organism=Nannochloropsis gaditana|type=mRNA|length=1285bp|location=Sequence derived from alignment at CM002467.1:24884..26168- (Nannochloropsis gaditana)
ATGTATCAGCGCCTTCCTTCCCTCCTCCTCCTCCTCCCCGTGCTTTCGGC
CGTTGATGCCTTCCACTCTCTCTTCCCAAACCGAGCCTTCAGTCGCCTGT
CCAGACAGTCCAAGCCCCTTTACTCCTCTACCTTCGCTTCGACTACCATA
TCATCTCCTTCTTCTCATTCGCCATCGGTTTCCGAAAAAAAGAGGGACTC
TGTGCAAGTATTAGAGTACCTCCAGTCCTTCTTGACTTCGGCGCCGACTG
CCTCTTCCTCCACCACCACCACCTCCTCCGCCACTCCTGCCTCCTTACCA
CCCTTGGATCCGAACCTCCCCTCTGACGTCAAGGCGGCCCTAGATGACGT
TCTGGCGATGGTGCAGGCGCGCGAGGAGCAAGTGAGGAACGGAGACGATG
GGGCGAGGGCCGTGAAGGAATGGAAGACGAGGGCGTACCGGTAAGGCTGT
TGCGGCGATAAATGATGGTGATGATAGCCATGTGGTCGCGTGATAATCCG
TATGGCGACAATGTTGACATTGCGGGCGTGAAGCATCGACGCGATCTTCC
TGCCCACCTCTTCCCCCCCCTTCCCCCCCTCCCACGTCTCACCCTCTCCT
CCCTCCAATCTCATCAGCCTCGAGCAAGACCTTCAGGCCACGCGTCGCAA
CCTTAAGGAGATCACCAACATCCGCCGCGATCTCGCCCACCGGCTCCAGC
AGGCCCAGACCGTGGCAGAGGCCGGGCGGAGAGGGAACGAGGAGAGGGTG
CGCGGGATGGAGGAAGAGCTCGCCGAAAAAAAGCGACAGCTGACGGAGCT
ACAAGAGCGGGAGGTAGGTCTCATGCCCCCCTCGACCCGGGCCCTTCTTC
TTCATTCCGTTGATTCCTCCTCCCTCCCCCTCTTCCTCCCTTCAGGCCTC
CCTCGCCCAAGCCCGGGAGGCTGCCCGGCGGGAGACGGACTCCCTCCTCG
CCATCCTCTCGCCCGGCCAAGAAGCTTCCAGAAGGGAGGCCTTGGAAGCC
CGCCTCGCCTCCCTGAGCGACTCTCTCCCTGCCTCTAGGCCACTCCCGGA
GGTGGAGGAGCTGGTAGGGGAGGGCGAGAGGGAGGCTTACCGAAGCTGGT
ACGCGAGGTGTTTCTCGTCCCTGGAGCAAGACATGAAGGGCGTGGAGGAC
GGGGCGCTGAGGGCAATGGAGGAGATGAGGGGGGAGGTGAAGAGGATGGA
GGGCTGTGTGCGGGCGGCGGAGGAAGGTGAGGGGGGAAGGCGAGGCGGAG
GGGGAAGTGGAAAGGTCGGCTCGGGAGGTGGTTGA
back to top

Coding sequence (CDS) from alignment at CM002467.1:24884..26168-

>rna5898 ID=rna5898|Name=rna5898|organism=Nannochloropsis gaditana|type=CDS|length=3078bp|location=Sequence derived from alignment at CM002467.1:24884..26168- (Nannochloropsis gaditana)
GCCTCCCTCGCCCAAGCCCGGGAGGCTGCCCGGCGGGAGACGGACTCCCT
CCTCGCCATCCTCTCGCCCGGCCAAGAAGCTTCCAGAAGGGAGGCCTTGG
AAGCCCGCCTCGCCTCCCTGAGCGACTCTCTCCCTGCCTCTAGGCCACTC
CCGGAGGTGGAGGAGCTGGTAGGGGAGGGCGAGAGGGAGGCTTACCGAAG
CTGGTACGCGAGGTGTTTCTCGTCCCTGGAGCAAGACATGAAGGGCGTGG
AGGACGGGGCGCTGAGGGCAATGGAGGAGATGAGGGGGGAGGTGAAGAGG
ATGGAGGGCTGTGTGCGGGCGGCGGAGGAAGGTGAGGGGGGAAGGCGAGG
CGGAGGGGGAAGTGGAAAGGTCGGCTCGGGAGGTGGTTGACCTCGAGCAA
GACCTTCAGGCCACGCGTCGCAACCTTAAGGAGATCACCAACATCCGCCG
CGATCTCGCCCACCGGCTCCAGCAGGCCCAGACCGTGGCAGAGGCCGGGC
GGAGAGGGAACGAGGAGAGGGTGCGCGGGATGGAGGAAGAGCTCGCCGAA
AAAAAGCGACAGCTGACGGAGCTACAAGAGCGGGAGATGTATCAGCGCCT
TCCTTCCCTCCTCCTCCTCCTCCCCGTGCTTTCGGCCGTTGATGCCTTCC
ACTCTCTCTTCCCAAACCGAGCCTTCAGTCGCCTGTCCAGACAGTCCAAG
CCCCTTTACTCCTCTACCTTCGCTTCGACTACCATATCATCTCCTTCTTC
TCATTCGCCATCGGTTTCCGAAAAAAAGAGGGACTCTGTGCAAGTATTAG
AGTACCTCCAGTCCTTCTTGACTTCGGCGCCGACTGCCTCTTCCTCCACC
ACCACCACCTCCTCCGCCACTCCTGCCTCCTTACCACCCTTGGATCCGAA
CCTCCCCTCTGACGTCAAGGCGGCCCTAGATGACGTTCTGGCGATGGTGC
AGGCGCGCGAGGAGCAAGTGAGGAACGGAGACGATGGGGCGAGGGCCGTG
AAGGAATGGAAGACGAGGGCGTACCGGCCTCCCTCGCCCAAGCCCGGGAG
GCTGCCCGGCGGGAGACGGACTCCCTCCTCGCCATCCTCTCGCCCGGCCA
AGAAGCTTCCAGAAGGGAGGCCTTGGAAGCCCGCCTCGCCTCCCTGAGCG
ACTCTCTCCCTGCCTCTAGGCCACTCCCGGAGGTGGAGGAGCTGGTAGGG
GAGGGCGAGAGGGAGGCTTACCGAAGCTGGTACGCGAGGTGTTTCTCGTC
CCTGGAGCAAGACATGAAGGGCGTGGAGGACGGGGCGCTGAGGGCAATGG
AGGAGATGAGGGGGGAGGTGAAGAGGATGGAGGGCTGTGTGCGGGCGGCG
GAGGAAGGTGAGGGGGGAAGGCGAGGCGGAGGGGGAAGTGGAAAGGTCGG
CTCGGGAGGTGGTTGACCTCGAGCAAGACCTTCAGGCCACGCGTCGCAAC
CTTAAGGAGATCACCAACATCCGCCGCGATCTCGCCCACCGGCTCCAGCA
GGCCCAGACCGTGGCAGAGGCCGGGCGGAGAGGGAACGAGGAGAGGGTGC
GCGGGATGGAGGAAGAGCTCGCCGAAAAAAAGCGACAGCTGACGGAGCTA
CAAGAGCGGGAGATGTATCAGCGCCTTCCTTCCCTCCTCCTCCTCCTCCC
CGTGCTTTCGGCCGTTGATGCCTTCCACTCTCTCTTCCCAAACCGAGCCT
TCAGTCGCCTGTCCAGACAGTCCAAGCCCCTTTACTCCTCTACCTTCGCT
TCGACTACCATATCATCTCCTTCTTCTCATTCGCCATCGGTTTCCGAAAA
AAAGAGGGACTCTGTGCAAGTATTAGAGTACCTCCAGTCCTTCTTGACTT
CGGCGCCGACTGCCTCTTCCTCCACCACCACCACCTCCTCCGCCACTCCT
GCCTCCTTACCACCCTTGGATCCGAACCTCCCCTCTGACGTCAAGGCGGC
CCTAGATGACGTTCTGGCGATGGTGCAGGCGCGCGAGGAGCAAGTGAGGA
ACGGAGACGATGGGGCGAGGGCCGTGAAGGAATGGAAGACGAGGGCGTAC
CGGCCTCCCTCGCCCAAGCCCGGGAGGCTGCCCGGCGGGAGACGGACTCC
CTCCTCGCCATCCTCTCGCCCGGCCAAGAAGCTTCCAGAAGGGAGGCCTT
GGAAGCCCGCCTCGCCTCCCTGAGCGACTCTCTCCCTGCCTCTAGGCCAC
TCCCGGAGGTGGAGGAGCTGGTAGGGGAGGGCGAGAGGGAGGCTTACCGA
AGCTGGTACGCGAGGTGTTTCTCGTCCCTGGAGCAAGACATGAAGGGCGT
GGAGGACGGGGCGCTGAGGGCAATGGAGGAGATGAGGGGGGAGGTGAAGA
GGATGGAGGGCTGTGTGCGGGCGGCGGAGGAAGGTGAGGGGGGAAGGCGA
GGCGGAGGGGGAAGTGGAAAGGTCGGCTCGGGAGGTGGTTGACCTCGAGC
AAGACCTTCAGGCCACGCGTCGCAACCTTAAGGAGATCACCAACATCCGC
CGCGATCTCGCCCACCGGCTCCAGCAGGCCCAGACCGTGGCAGAGGCCGG
GCGGAGAGGGAACGAGGAGAGGGTGCGCGGGATGGAGGAAGAGCTCGCCG
AAAAAAAGCGACAGCTGACGGAGCTACAAGAGCGGGAGATGTATCAGCGC
CTTCCTTCCCTCCTCCTCCTCCTCCCCGTGCTTTCGGCCGTTGATGCCTT
CCACTCTCTCTTCCCAAACCGAGCCTTCAGTCGCCTGTCCAGACAGTCCA
AGCCCCTTTACTCCTCTACCTTCGCTTCGACTACCATATCATCTCCTTCT
TCTCATTCGCCATCGGTTTCCGAAAAAAAGAGGGACTCTGTGCAAGTATT
AGAGTACCTCCAGTCCTTCTTGACTTCGGCGCCGACTGCCTCTTCCTCCA
CCACCACCACCTCCTCCGCCACTCCTGCCTCCTTACCACCCTTGGATCCG
AACCTCCCCTCTGACGTCAAGGCGGCCCTAGATGACGTTCTGGCGATGGT
GCAGGCGCGCGAGGAGCAAGTGAGGAACGGAGACGATGGGGCGAGGGCCG
TGAAGGAATGGAAGACGAGGGCGTACCG
back to top
Synonyms
Publications