rna5894, rna5894 (mRNA) Nannochloropsis gaditana

Overview
Namerna5894
Unique Namerna5894
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length330
Alignment locationCM002467.1:15554..16075 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_103136g1.10513.mrna
Orig protein idgnl|cribi|Naga_103136g1.10513
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:15554..16075 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_103136g1gene5689Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24794.1cds5879Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5894rna5894-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5894 ID=rna5894|Name=rna5894|organism=Nannochloropsis gaditana|type=mRNA|length=330bp
ATGCCCCTCTCCCCTTCAGACGGCCCCTCCCGAGCCTTTTCGGCCCTTCC
TGCTTCCCGCCCTCCCTCCCTCGCTGCCCCGCTTCTCCTGCAGCCCCGTG
GCAACTTTTCTTCCTATCCACTCTCCCCTTGTTTGAAGCCGGAAAGCGGG
GGAATCGGTCTGGATGGAAGCGAAGATGGCACCCAGCACCAGGAGGGGAT
AGGCAGCAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTTTGAGTC
CCGAAGAGCTTTTCTCTTCCCACAAAACAATGCGCGCGCACGCTGCTCTT
GAGGTACCAGGTGCAGCGACACCACCTTAA
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protein sequence of rna5894

>rna5894-protein ID=rna5894-protein|Name=rna5894|organism=Nannochloropsis gaditana|type=polypeptide|length=166bp
PAPPVPHASSEDSEEMAEASVTRQPPPGAWRAPEREAGSNVTGDGPPASA
AMEGEGAWEGLGEGQGEDEGSQSSSFASALSSTSPSIPSSSAPSALTEAR
SPSLSISSCSSASCSGSSSSCSPSFSETEGEDGREGGHSNPQSPAKQRRE
PYGPTLRRTGLGGKLL
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mRNA from alignment at CM002467.1:15554..16075-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5894 ID=rna5894|Name=rna5894|organism=Nannochloropsis gaditana|type=mRNA|length=522bp|location=Sequence derived from alignment at CM002467.1:15554..16075- (Nannochloropsis gaditana)
CCCGCGCCTCCCGTCCCCCACGCGTCCTCCGAAGACTCTGAAGAGATGGC
AGAGGCCTCGGTGACTAGGCAGCCCCCACCTGGGGCGTGGAGGGCGCCGG
AGAGGGAGGCCGGCTCCAATGTGACTGGGGATGGGCCCCCCGCTTCGGCG
GCCATGGAAGGGGAAGGGGCGTGGGAGGGGTTGGGGGAGGGGCAGGGGGA
AGACGAGGGGAGCCAAAGCAGCAGCTTCGCCTCCGCCCTGTCCTCCACCT
CGCCCTCCATCCCTTCCTCCTCCGCGCCGTCCGCCTTGACAGAGGCCCGC
TCCCCTTCGCTTTCCATCTCTTCCTGCTCTTCCGCCTCCTGCAGCGGCTC
TTCTTCCTCCTGCTCCCCCTCCTTCTCAGAGACAGAGGGGGAGGACGGGA
GGGAGGGCGGGCATAGCAATCCCCAAAGCCCAGCCAAACAGCGTCGGGAA
CCGTATGGGCCGACGCTCCGGCGCACCGGCTTGGGCGGGAAGCTGCTGTG
AGGAGGAAGGAGGGAGGGAGGG
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Coding sequence (CDS) from alignment at CM002467.1:15554..16075-

>rna5894 ID=rna5894|Name=rna5894|organism=Nannochloropsis gaditana|type=CDS|length=501bp|location=Sequence derived from alignment at CM002467.1:15554..16075- (Nannochloropsis gaditana)
CCCGCGCCTCCCGTCCCCCACGCGTCCTCCGAAGACTCTGAAGAGATGGC
AGAGGCCTCGGTGACTAGGCAGCCCCCACCTGGGGCGTGGAGGGCGCCGG
AGAGGGAGGCCGGCTCCAATGTGACTGGGGATGGGCCCCCCGCTTCGGCG
GCCATGGAAGGGGAAGGGGCGTGGGAGGGGTTGGGGGAGGGGCAGGGGGA
AGACGAGGGGAGCCAAAGCAGCAGCTTCGCCTCCGCCCTGTCCTCCACCT
CGCCCTCCATCCCTTCCTCCTCCGCGCCGTCCGCCTTGACAGAGGCCCGC
TCCCCTTCGCTTTCCATCTCTTCCTGCTCTTCCGCCTCCTGCAGCGGCTC
TTCTTCCTCCTGCTCCCCCTCCTTCTCAGAGACAGAGGGGGAGGACGGGA
GGGAGGGCGGGCATAGCAATCCCCAAAGCCCAGCCAAACAGCGTCGGGAA
CCGTATGGGCCGACGCTCCGGCGCACCGGCTTGGGCGGGAAGCTGCTGTG
A
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Synonyms
Publications