rna588, rna588 (mRNA) Nannochloropsis gaditana

Overview
Namerna588
Unique Namerna588
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length722
Alignment locationCM002455.1:1470866..1472109 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100758g1.9340.mrna
Orig protein idgnl|cribi|Naga_100758g1.9340
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1470866..1472109 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100758g1gene566Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna588rna588-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30085.1cds588Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna588 ID=rna588|Name=rna588|organism=Nannochloropsis gaditana|type=mRNA|length=722bp
AAGGGGGGGACCGAGTGAGGGCAGCGGTTAGGGATAGAAGAGAACGGTCA
GAGCGCTCATCAGGATACGGCTTGTATTATGATCATTCTCATGATCATCA
TTTCCTTTTGAGGACCACTCTTCATTTCTTCCCATTCCTTCCTTATCCCT
CCCCCCCCTGGTCCCAGCTACCGGCCTGGCTCTCCCCCATGCTCCAAGCA
GCACAGGGCCACGCCCTGGCCTTTGCCAAGGCGCGAGGGCTCCACTTGGC
GTGGAGAAAGCTGCGCTCCTTCGTCCAAGACCGACAGCTGGCCAGAGCGA
AAGGCCACGGGCCCATATCCTTTTGCCTCGCCGTGCTCGGGCAAGGAGGG
CGGGAAGAAGGGCGGGAAGGAGGGCGGCCGGTCTGGAGGAAGACCCTCCT
GGTTGTGCTCTCAGGCATGGCGTGGGTGGGGGCGTGGCTCCTGCTCACTT
GGAGGAAAGTGCAGACCTGGGGGAAGAAGGCAGCGCTCGGTCTCCGGGTG
GAGAAGTGGACAGACCTCAGCCAGGCCGCCTGCCACAAGGCAAGCTCGGC
GGCCGCGCAGGCCTTGGCGATCATCCGGATCACGCTGTGCCGTTGCTTGG
CAAGTGTGCAAACCACGTGGAAAGAGAGGCTTTATCCCTCCATCATGGCC
GCATGGACGAGCTTCCTTTCCGGTCTCTCCCCGCTCTGGGCCTGGTTGGC
CTCGCGGTGGGAGCAAGCGAGG
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protein sequence of rna588

>rna588-protein ID=rna588-protein|Name=rna588|organism=Nannochloropsis gaditana|type=polypeptide|length=213bp
MAELPKGRHRRQARIVTRLCSVALLFCSWFFLFMASTTASSASSSATHDV
ISTASTSAAAGRAPFAPAVAGWFFSTTSRMTKQEKRGQADMMLQAHEVPP
TDRAENPIKALKIIFLSHGKESGMGVAHLFAVTLQTAVTPILRSVGYHLQ
RLYRALVWALNAGVVDGSRRVGALLVQGLGSLASSLCQGLVAVVELAEVR
FHVEGGRYFILPK
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mRNA from alignment at CM002455.1:1470866..1472109-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna588 ID=rna588|Name=rna588|organism=Nannochloropsis gaditana|type=mRNA|length=1244bp|location=Sequence derived from alignment at CM002455.1:1470866..1472109- (Nannochloropsis gaditana)
ACGGGCCGCTGTCCGAAAAGTGACGCGAAGAAAGCGAAGAGGTCGAAAGC
CCATAGCTGACGTAGCACTCCACACTGAAATCGGACCTAAAATGCCCATT
CATGCATTCATTTACCCAACATACGTCAAATTTGAACCGTTTCCTAAGCA
TTGCACAGTTCTAATAAAGGGCTGGATTCTCATACTGGTCGTCCTTGCGC
AGACTCCAGTCCCCAGGTCTCCGAATCGCTTGGAAAGAGTGCAACTGACA
CCAACATCAACCTGTCGGTGCACTCGCCCCCCTTGTTTGCACCACTGACA
ACCTCCAGCAAAAACACCATCATATTTCTTAAAACTGCCATGGCCGAATT
GCCGAAGGGGAGGCACCGGCGACAGGCGCGCATTGTCACGCGTCTGTGCA
GTGTGGCGCTGTTATTCTGCTCCTGGTTTTTCCTTTTCATGGCTTCTACG
ACTGCCTCCTCGGCGTCCTCCTCTGCCACGCATGATGTAATTAGCACAGC
GAGCACCAGTGCTGCTGCTGGCAGGGCTCCATTTGCCCCGGCTGTGGCAG
GCTGGTTCTTCTCGACAACGTCGCGCATGACCAAGCAGGAAAAACGAGGA
CAGGCGGATATGATGCTGCAAGCACACGAAGTGCCGCCAACGGATCGAGC
AGAAAATCCCATCAAAGCCTTAAAAATTATATTCCTGAGCCACGGAAAAG
AGAGCGGGATGGGTGTGGCGCACTTGTTTGCTGTAACCCTTCAGACCGCC
GTCACTCCCATCCTGCGGTCCGTCGGCTATCACTTGCAACGCCTGTACCG
AGCTTTGGTTTGGGCACTTAACGCTGGGGTTGTGGATGGGTCACGGAGAG
TTGGTGCATTACTGGTGCAGGTACGGGCCAAAGGGTGGAGAAGAAAGGAG
AAGGCGGGGGCTGGTATCCATACGCCCCCGTCCCCATGCCGACGCCATGC
TCTCTGTCCGCCGTCAATGGATTCTTACCAAGCAGACAGTGGATTGTAAA
GGGAAAGCGCGAGTAAATTTGTGTGTCGCGGTGGCAAGGATGTTTCTCCA
TCTGCTTTTCCCTCCAATGCTCTGACCGACCACACGCCTTCCTCTTTCCC
TCCCTCCTTTCCCCCCTCCCTTTGCTCCACCTCAGGGGCTCGGTTCTCTT
GCTTCCTCTCTTTGCCAGGGTCTCGTGGCTGTTGTTGAGCTGGCAGAGGT
GAGGTTTCATGTGGAAGGTGGCCGCTACTTCATTCTCCCAAAGG
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Coding sequence (CDS) from alignment at CM002455.1:1470866..1472109-

>rna588 ID=rna588|Name=rna588|organism=Nannochloropsis gaditana|type=CDS|length=1280bp|location=Sequence derived from alignment at CM002455.1:1470866..1472109- (Nannochloropsis gaditana)
GGGCTCGGTTCTCTTGCTTCCTCTCTTTGCCAGGGTCTCGTGGCTGTTGT
TGAGCTGGCAGAGGTGAGGTTTCATGTGGAAGGTGGCCGCTACTTCATTC
TCCCAAAGGATGGCCGAATTGCCGAAGGGGAGGCACCGGCGACAGGCGCG
CATTGTCACGCGTCTGTGCAGTGTGGCGCTGTTATTCTGCTCCTGGTTTT
TCCTTTTCATGGCTTCTACGACTGCCTCCTCGGCGTCCTCCTCTGCCACG
CATGATGTAATTAGCACAGCGAGCACCAGTGCTGCTGCTGGCAGGGCTCC
ATTTGCCCCGGCTGTGGCAGGCTGGTTCTTCTCGACAACGTCGCGCATGA
CCAAGCAGGAAAAACGAGGACAGGCGGATATGATGCTGCAAGCACACGAA
GTGCCGCCAACGGATCGAGCAGAAAATCCCATCAAAGCCTTAAAAATTAT
ATTCCTGAGCCACGGAAAAGAGAGCGGGATGGGTGTGGCGCACTTGTTTG
CTGTAACCCTTCAGACCGCCGTCACTCCCATCCTGCGGTCCGTCGGCTAT
CACTTGCAACGCCTGTACCGAGCTTTGGTTTGGGCACTTAACGCTGGGGT
TGTGGATGGGTCACGGAGAGTTGGTGCATTACTGGTGCAGGGGCTCGGTT
CTCTTGCTTCCTCTCTTTGCCAGGGTCTCGTGGCTGTTGTTGAGCTGGCA
GAGGTGAGGTTTCATGTGGAAGGTGGCCGCTACTTCATTCTCCCAAAGGA
TGGCCGAATTGCCGAAGGGGAGGCACCGGCGACAGGCGCGCATTGTCACG
CGTCTGTGCAGTGTGGCGCTGTTATTCTGCTCCTGGTTTTTCCTTTTCAT
GGCTTCTACGACTGCCTCCTCGGCGTCCTCCTCTGCCACGCATGATGTAA
TTAGCACAGCGAGCACCAGTGCTGCTGCTGGCAGGGCTCCATTTGCCCCG
GCTGTGGCAGGCTGGTTCTTCTCGACAACGTCGCGCATGACCAAGCAGGA
AAAACGAGGACAGGCGGATATGATGCTGCAAGCACACGAAGTGCCGCCAA
CGGATCGAGCAGAAAATCCCATCAAAGCCTTAAAAATTATATTCCTGAGC
CACGGAAAAGAGAGCGGGATGGGTGTGGCGCACTTGTTTGCTGTAACCCT
TCAGACCGCCGTCACTCCCATCCTGCGGTCCGTCGGCTATCACTTGCAAC
GCCTGTACCGAGCTTTGGTTTGGGCACTTAACGCTGGGGTTGTGGATGGG
TCACGGAGAGTTGGTGCATTACTGGTGCAG
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Synonyms
Publications