rna5861, rna5861 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5861
Unique Name	rna5861
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	4428
Alignment location	CM002466.1:1014666..1015072 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100234g8.1031.mrna
Orig protein id	gnl\|cribi\|Naga_100234g8.1031
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:1014666..1015072 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100234g8	gene5657	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5861	rna5861-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24827.1	cds5846	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:1014666..1015072+
coding sequence from alignment at CM002466.1:1014666..1015072+

mRNA sequence

>rna5861 ID=rna5861|Name=rna5861|organism=Nannochloropsis gaditana|type=mRNA|length=4428bp
ATGGGAGAGTCCTTGGTCTTTCTCACTCGGACACCTCCCCTCGACTACAC
AGGTCCTTGTGCAAACATGAGGCTCCTCTTCTTTGTCCCTCTTCTTCTTT
TGGGATGCAGAGCAGACAATGTTATCACCCCATGGTCGCTAGCAATGCGT
ACCCATATCCAGCAAGCCCAATTAAGCAACAGTGATGCCTCTCGACTCCT
CTCCATGCTGCATGTGGCCCAGCATTTGGCAGTCCAAGACGTCCTTCAGA
GGAAGAATATCCTCCCCGAAGACGAAGAGAGCATCCGCGACCCCGATTTA
CAGCCAGATCTCATCGCAGCTGTGGCAGGGGCGGGAAAATTTGTAATGGA
CCGGATGGCGCCGGCTGCGGGGGCTGCCACGGACCTGCTAGTATCATCCC
AGACGGAGATCCCCAACGTCTCCTCTCGACGCATTCGAGACTCCAAGACC
CAGGGCTCCAAGGTGGCAGAAAACATGCTGAACATCCGATTGAACGATGC
GAGTGACCGGGCCATGCCGGAACCGAACGTGGGAAGCCAAGAGGAGGGTT
TTTGGCGCCCCACTCCTCCCGAGTTCTCGCCGGGCGCTGACTACCAGTGG
CCCCGGGTCACGCCCTGGATCCTAGATCCTAACGCTCTCCCTATTGACTT
TCGCATGCCTGTTCCTGCAACCACATCCAGCGAGATCTACAAGACTAGCT
TTGACGAGACGATCGCCTTGGGCTCAAAAGTCTCGGAGGTCCGCCTGGCG
AACCAGACTCAGGCGGCCGAGTTCTGGGCAACGGGCCCGCAGGAGCTGTG
GATGCAGGTGCTGGATCAACTGACCATCAGATCTGATCCTTTCCCAGAGT
CGCGACCGGCGGAGCCTCGTACTGTCTTCTTGCGGCAGGGCGCAGGAGTC
AAGGAGGCGGCCAAGGAATGGGGCAATGAATGGAACAACCAGTGGAACAA
CAACCAATGGAACAAGGGCAATGAATGGAATAATCAGTGGAATAACAACC
AGTGGAATAACCAGGGCAATGACTGGAACAATCAATGGAACAATAATCAG
TGGAATAACCAGTGGAATAACCAGGGCAACAACCAATGGAACAACAATCA
GTGGAACCAAGGCAATGACTGGAACAACCAATGGAACAACAACCAATGGA
ACAACAATCAGTGGAACAACCAGGGGACTGACTGGAACAACCAGTGGAAT
AACCAGTGGAACAACCAGGCCAATAATTGGAACAATCAGGACTGGAATAA
TCAGTGGAATAACCAGGGAAATGATTGGAACAACCAAGGGAACAACCAGT
GGAATAACCAAGGCAACAATTGGAACAACCAGTGGAATAACCAAGGCAAC
CAATGGAACAACCAATGGAATAACAACTGGAACAATGCAGCCAGCAAGGA
GGTCGTAGACGGGGCGGCCGCGAGCTGGGGGGCTGCGGTCGGAAGCGGGG
AGGGAGCATCCGGCTCTGTCGTGGAGAAGGTGCCCGATGTGACGGACCCA
GCCAAGGAGTGGGGCAACGACTGGAACACGCAATGGCAGTGGAATAACCG
AGGACCCACTGGCGGTTGGAACAACCAAGGCAACAACTGGAACAACGGTG
CCAACAATTGGAACAACCAATGGAACAACCAGGGCAACCAATGGAACAAC
AATTGGAATAACCAAGGCAACAATTGGAATAATTGGAACAACCAAGGCAA
CTGGAACAACCAATGGAACAACAATTGGAACAACAATTGGAACAACAATA
ATTGGAACAACCAGGGAACCAATTGGAACAACAATTGGAATAACCAGGGC
AACCAATGGAACAACAATTGGAACAATTGGAATAATTGGAATAACCAGGG
CAACCAATGGAACAACAATTGGAACAACAATTGGAATAACAATAACTGGA
ACAACCAAGGAACCAATTGGAACAACAATTGGAACAACAATTGGAACAAT
AATAACTGGAACAACCAGGGCAACCAATGGAACAACCAGTGGAACAACCA
GTGGAACAACCAAGGCAACCAATGGAACAACAACCAGTGGAATAACCAAG
GCAACAATTGGAACAACGGACAAGCCAATTGGAACAATGCCAACAATGGG
AACAACCAAGGCACGAATTGGAATACCATGGCCAGCAAGGAGGCACTCGC
TGAAGCAGCGGTCAGCCCACAAGCCGCGGTAGAAGGCGTTGAAATCGTTC
CAGGTTCTGTGACAGAGAAGCTACCTGGGGTACCGGTCCCAGCCAAGGAT
GATTGGAATAACCAGAGGGACAAGCACGAAGAGGACTGGAAAGGCAATGA
TTGGGATGGCAAAGGCAATGATTGGAAAGGCAACGATTGGGATGGCAAAG
GCAATGATTGGAAAGGGAATGATTGGAAAGGGAATGATTGGAAAGGCAAC
GATTGGGATGGCAAAGGCAATGATTGGAAAGGGAATGATTGGAAAGGGAA
TGATTGGAAAGGCAACGATTGGAAAGGAAATGATTGGAAAGGGAACGATT
GGAAAGGGAATGATTGGAAAGGAAATGATTGGAAAGGGAATGATTGGAAA
GGCAACGATTGGAAAGGGAATGATTGGAAAGGGAATGATTGGAAAGGCAA
CGATTGGAAAGGGAATGATTGGAATAACCCGTGGAACAACCAGTGGAACA
ACCAGTGGGGCAATAATCAGTGGAACAACCAGTGGGGCAATAATCAATGG
AACAACCAGTGGGGCAACAACCAATGGAACAATCCGTGGAATAACCAATG
GAACAACCAATGGAACAATCAGGGCAACTGGAACAACCAGTGGAATAATC
AATGGGGCAACAACCAGTGGGATAATAACCAGTGGAACAACCAATGGAAC
AACCCGTGGAATAATCAATGGAACAACCAGTGGGGCAACAATCAATGGAA
CAACCAGTGGGGCAACAACCAATGGAACAACCAGTGGGGCAACAATTGGA
ACAATGGTTGGAACAATCAATGGTACAGCCAGAGCAACGGGTTGAACAGC
ACCGGAGGAGAAGACGCCCTTGACCAGACGAGAACGACGCCCGCAATTGA
AAGCAGCAAGGATTCGGCGGCCTCCGTCTTGGCGCCGCAGGGCCCAGGCG
ACAAGGAGGCCGACAAAGAATGGGGCAATGAGTGGAAAAACGACTGGAAT
AACCAGGGTAATAACCAGTGGAACAATCAGGGAAATCAATGGAATAACCA
GGGTAATAACCAGTGGAATAACCAAGGCAATCAATGGAATAACCAGGGTA
ACAATCAGTGGAACAATCAAGGCAACAATCAGTGGAACAATCAAGGCAAC
AATCAGTGGAACAATCAAGGCAACAATCAGTGGAATAATCAGGGAAACAA
TTGGAACAATCAGGGTAATCAATGGAACAACCAGGGAAATCAATGGAACA
GCCAGGGCAACAACCAGTGGAACAACCAAGGCAACCAGAATAATAACTGG
AACAATGGGGCTACTGATTGGAACGCAGCGAATGGTGGTGCTGACGCTGG
AAACTGGAACCAGGGCAACAACCAGTGGAATAACCAAGGCAACCAGTGGA
ATAACCAGGGCAATCAATGGAATGCTGCCAACGGAGGTGCCCCTGCGGCC
AACGATTGGAACAACGGAGGGAACAACCAGTGGAATAACCAGGGGGTCCA
GGGCGCCAATTGGAACGACGGGGCAAACGCAGCCCCCGATACGACCAACA
ATTTCAACAACGGAGTCAACGCCAGGAACGGCGCAACCACTGCGAATGGA
TGGATGAACGCTGGCAATAATGGGGCAGTGGTCGGGAAAGAGGGCATGCA
AACAGCCACCGGAATGGCCAGCAACCTTGCTTTCAACGTGGCGGCGGCGG
CCCGGGCTTACGCAATGGCCAGTGTGGCGGCGATGGACAACCGCATCGTC
ACCTTGGACAACAAATATTTCTTCGACACCTGGAGGCCTGTCACGGCGAT
CCGGCTGAACGCTGATCCCCCACAGCCAGAGTGGGAGCCGCTTTTGGTCA
CGCCCGCCACTCCGGAGTACCCAAGCGGGTACGGAACGCTGGCGGGGGCG
ATGGTGGAGGTGATCAAGACGGTGGCAAACAACGGCTTGGATGAAGCGCC
TTTCATGCTGGCGCTCAAGGGCGCAAATGGCGAGCAACGGAACTATGCGA
CCTTGTCAAGCATCGCCGAGGAGAGCGCCGCTTCACGCGTCTATGGGGGC
CTCCAGTGGGCCCACACGACCGCCCCCTCCTTTGGCTTGGGACAACAGGT
TGCGACCGCGGTGTTGGCTGGCTTTGACACCATGTACGCGCCACAGGCGG
CTATTGAGACCATGAACCAGCAGTATCATCTGGCAGAGCCCGTGCAGCAC
GTTCTCCTACCTGGCCCACAGCAACGGGGCAACCGACATAAGAAGAAGCG
TTGGCATGGTCTACGGATATTCAAGTGA

protein sequence of rna5861

>rna5861-protein ID=rna5861-protein|Name=rna5861|organism=Nannochloropsis gaditana|type=polypeptide|length=111bp
MHALAGVPPSLRAVLSFVEMWCVVWSQYEAWALLLVPNCQLFKAFLSDGC
SLVSEGLRKINNGSYVVKFYVMNRYFSSPTYMMGEFPLLRGKDRSSFAFC
DHAGGYTTRHN

mRNA from alignment at CM002466.1:1014666..1015072+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5861 ID=rna5861|Name=rna5861|organism=Nannochloropsis gaditana|type=mRNA|length=407bp|location=Sequence derived from alignment at CM002466.1:1014666..1015072+ (Nannochloropsis gaditana)
ATGCACGCTTTAGCGGGCGTCCCACCAAGTCTGCGGGCCGTCTTATCCTT
TGTAGAAATGTGGTGTGTTGTCTGGTCGCAATATGAAGCATGGGCCTTGC
TTCTTGTACCAAATTGTCAATTGTTTAAAGCATTTCTCTCCGATGGCTGT
TCTTTAGTTTCAGAGGGGCTACGAAAAATTAATAACGGATCGTATGTGGT
GAAATTTTATGTCATGAATCGATATTTTTCTGTGCGTGCTACGAATTCAT
GTCTTTAGGGGTTAAGGGAAAAACAGTCACGCAGGCGTCAATCAGTGGTT
AGAGCCCGACGTACATGATGGGTGaatttcctctccttcgggGCAAGGAT
AGGTCATCTTTCGCTTTCTGTGACCATGCTGGAGGCTACACGACTCGTCA
CAATTAG

Coding sequence (CDS) from alignment at CM002466.1:1014666..1015072+

>rna5861 ID=rna5861|Name=rna5861|organism=Nannochloropsis gaditana|type=CDS|length=672bp|location=Sequence derived from alignment at CM002466.1:1014666..1015072+ (Nannochloropsis gaditana)
ATGCACGCTTTAGCGGGCGTCCCACCAAGTCTGCGGGCCGTCTTATCCTT
TGTAGAAATGTGGTGTGTTGTCTGGTCGCAATATGAAGCATGGGCCTTGC
TTCTTGTACCAAATTGTCAATTGTTTAAAGCATTTCTCTCCGATGGCTGT
TCTTTAGTTTCAGAGGGGCTACGAAAAATTAATAACGGATCGTATGTGGT
GAAATTTTATGTCATGAATCGATATTTTTCTAGCCCGACGTACATGATGG
GTGaatttcctctccttcgggGCAAGGATAGGTCATCTTTCGCTTTCTGT
GACCATGCTGGAGGCTACACGACTCGTCACAATTAGATGCACGCTTTAGC
GGGCGTCCCACCAAGTCTGCGGGCCGTCTTATCCTTTGTAGAAATGTGGT
GTGTTGTCTGGTCGCAATATGAAGCATGGGCCTTGCTTCTTGTACCAAAT
TGTCAATTGTTTAAAGCATTTCTCTCCGATGGCTGTTCTTTAGTTTCAGA
GGGGCTACGAAAAATTAATAACGGATCGTATGTGGTGAAATTTTATGTCA
TGAATCGATATTTTTCTAGCCCGACGTACATGATGGGTGaatttcctctc
cttcgggGCAAGGATAGGTCATCTTTCGCTTTCTGTGACCATGCTGGAGG
CTACACGACTCGTCACAATTAG

Synonyms

Publications