rna5859, rna5859 (mRNA) Nannochloropsis gaditana

Overview
Namerna5859
Unique Namerna5859
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length927
Alignment locationCM002466.1:1009186..1009533 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100234g6.1028.mrna
Orig protein idgnl|cribi|Naga_100234g6.1028
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:1009186..1009533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100234g6gene5655Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5859rna5859-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24824.1cds5844Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5859 ID=rna5859|Name=rna5859|organism=Nannochloropsis gaditana|type=mRNA|length=927bp
AGAAATACCCTCACAATGTCTACAAATTGGAAATCACATCTTGGAAGCAC
GCATACGCACAGGTGGCAGGAGTTTAAAACGAAAGCTCCCCGGTTGAAGA
GCGAAGGAGGGAGGATGTGGCTCTGGTCATGTGCAACAGGGAGGACCGCC
CATTGCGCTTTCAAAAAGCAGCCCCAAGCGCCCGCGTCCTCCGTATCCTT
CCTTCCTTTACTCCTCCTCACTTACCTTCTGCTTCACGCGGATGCCAGCC
TGCTGACTCCCATCTCCCTGGGCATTGATCTCGGCAATCACAAAAGCGTG
GTTGCCCTGGCGCAGGGACACGGGATCGATGTCCACGTCAATGAGATGGG
GCGCCGCGAGACTCCCTCCGCGGTACTTCTGCGGGGTCGACGGCGGCATT
TCGGGGATTTGGCCCTGGCCGGTGCAGGCGCGGCGCCGGCAAGCGCAGTA
AGTGAGTTGCGCCGCCTCCTGGCTCTGGGTCTGCCCGTCGACGATGAGGA
CGGTGGCCGAGGAGATGGGGGAGACGAGAGTAAGGACGTCGCAGAGGTCT
TCGGGGCAGCGGTGGTGGGCACGGGCGGGGCGGAGGATCCTTGCCACGTG
GGGCCACGCGTGCGAGTCGAGCACGACGGCCGGGCCCTAACGCTGAGCGC
GCGGCAAGTGCTCGCCATGTTCGTTGCCCACCTCCGCAAAGGCGTGGAGG
CCGCCCACGGGGACGACAACGTCCTGAACACGGTCCTGAGCGTCCCTGCC
TGGTTTGGGAGGAGCCAGCGAGCCTTGGTCGTGGACGCAGCGAGGATCGC
CGGGTGTGCAAGCCCCGCCTGCGTGACGGACGGAACCGCGTTGGCCCTGG
GGTATGGCTTGCTGAACGTGGTGAGGGGAGGGGGAGGGAGGGGAGGAGAG
GTGGGGGGAGGCAGGGGAGGCCCCTAG
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protein sequence of rna5859

>rna5859-protein ID=rna5859-protein|Name=rna5859|organism=Nannochloropsis gaditana|type=polypeptide|length=101bp
MCIMTICCPYLARGAPWGGKKHHKVFDADSQVPPTSTWLPAKVKREWGAI
LMGENAHGCTFERPRRLVDSTHERRQGSQRTHSCLRCCMGNYVDPIRVSS
C
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mRNA from alignment at CM002466.1:1009186..1009533-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5859 ID=rna5859|Name=rna5859|organism=Nannochloropsis gaditana|type=mRNA|length=348bp|location=Sequence derived from alignment at CM002466.1:1009186..1009533- (Nannochloropsis gaditana)
ATGTGTATTATGACGATATGTTGTCCTTATCTGGCAAGGGGGGCGCCGTG
GGGAGGAAAAAAGCACCATAAAGTATTCGACGCGGACTCTCAGGTCCCCC
CGACCAGCACTTGGCTACCGGCAAAGGTGAAAAGAGAATGGGGGGCGATG
TGAGCGGCGAAGGGACAATGACTACGTGTTAATCCTGTGAGTCTTATGGG
GGAAAACGCACACGGATGTACATTTGAGAGGCCGAGGCGGCTTGTAGATA
GCACCCATGAGCGACGGCAAGGCTCGCAGCGGACACACTCTTGTTTGCGG
TGTTGCATGGGGAATTACGTGGATCCCATCCGGGTGTCTTCCTGTTAA
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Coding sequence (CDS) from alignment at CM002466.1:1009186..1009533-

>rna5859 ID=rna5859|Name=rna5859|organism=Nannochloropsis gaditana|type=CDS|length=612bp|location=Sequence derived from alignment at CM002466.1:1009186..1009533- (Nannochloropsis gaditana)
TCTTATGGGGGAAAACGCACACGGATGTACATTTGAGAGGCCGAGGCGGC
TTGTAGATAGCACCCATGAGCGACGGCAAGGCTCGCAGCGGACACACTCT
TGTTTGCGGTGTTGCATGGGGAATTACGTGGATCCCATCCGGGTGTCTTC
CTGTTAAATGTGTATTATGACGATATGTTGTCCTTATCTGGCAAGGGGGG
CGCCGTGGGGAGGAAAAAAGCACCATAAAGTATTCGACGCGGACTCTCAG
GTCCCCCCGACCAGCACTTGGCTACCGGCAAAGGTGAAAAGAGAATGGGG
GGCGATTCTTATGGGGGAAAACGCACACGGATGTACATTTGAGAGGCCGA
GGCGGCTTGTAGATAGCACCCATGAGCGACGGCAAGGCTCGCAGCGGACA
CACTCTTGTTTGCGGTGTTGCATGGGGAATTACGTGGATCCCATCCGGGT
GTCTTCCTGTTAAATGTGTATTATGACGATATGTTGTCCTTATCTGGCAA
GGGGGGCGCCGTGGGGAGGAAAAAAGCACCATAAAGTATTCGACGCGGAC
TCTCAGGTCCCCCCGACCAGCACTTGGCTACCGGCAAAGGTGAAAAGAGA
ATGGGGGGCGAT
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Synonyms
Publications