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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100322g6.5907.mrna |
| Orig protein id | gnl|cribi|Naga_100322g6.5907 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:973514..978238 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5842 ID=rna5842|Name=rna5842|organism=Nannochloropsis gaditana|type=mRNA|length=2775bp
AAAGGCTTTCACCCGCGACTTGACCCCCTTCTTCGCCCACTTCCGCTTCT
CCCTCCTCCCGGTGCCGGAGCACAACCGGATGGGGGAATGCCTGAGCCTC
CTGCCTGCCCCTGCCTGCAAGCGCGTCAGGGAGGTGCCCGGGAACAGGCC
CGGGATCCTGACCACCAGCACCAACACCAGCACCACACCCACCTACTTCC
ACCCGAGCCTCCGAGACCCACGGATCTTAGGCCTGAATGGGGCGGGCCAG
GAGGGGGGATGGGAGTGGGAGAACCTCTCAGCGTTCGGGAAGGCGGACGG
GCCGGGAGGACAGAAGGAAGAGGAGGGTGGGATGAAGAGGAAGCGGGCTG
GGGAACATGGGATGGAGGACGGGGACGCACGCGCGAAGAATTCCCTCCCT
CCGCCCCCAGGACACTACCCTCCTTACGCGCTGCCCCCCACCAGCACGGC
TTCGTCCCAGGGCCCCCGGTGGGGGCGTAGGGGGGATCCGGGTCATGCCC
GCCGCCCGCGTCCATGGGGGAATTCTTCGCACGGAGGGATGCAGACCAGG
CTAAGGCCCAGGCGGAGAGGGAGAGCGGGAAGGCGGAAAGCAGTAGAAGC
GATGCGGAGGCGCGCATTGCGCTGTTGACCGCTCAGGTCCTGGAGCTTCA
GAAACGTCAGCAGGAAATGCACAAGCAGCAGGAGGCACAGCAGCAAGCGG
TCTGGAAACAAATCATCACCGACCTGATGGGCCCGCCCGTGCCCGCAGGA
GCGAGCGAGAGCCGCAAGCCCGGGGCTGAAGGGGCAGGAGGATTGTCGTA
CCTGAGCCGAGGAGGGATCAGAGGGACGTCGACGCCTGCCGCGGCGGCAC
CAGCGCCAGAAGTGCTTCCTCCTCCCCGCCCTGGCTTGGCTAATTCCGCA
CCGTCGTCGGCTCCTCCCCCCCCCGGCCCGCCCTTTCCTGTACGCCACCC
CCCGCCTGCATGCCCAGCAACAGCAGCAGCTGGAAAATCAAGCGCCACCC
AGCCATGCCAGTGGGCCGGACGCGCGAATGATGCCGCCTCAACGGCGACT
GCCCCGGCATCCCTCGGCTTCCTCAGCCTCTCCCTTCACCTCCTCCTCCT
CCATGTCCTCCTTCTCCTCCTCCCCTTCCTCCTCCCCCACCTTTTCGTCC
TCGACGGCCCTGCCCAAACATTACCCCATCCCCGCCCAAGACCTCCACCA
CAGACACTCCCTGCCTGGGCCCCTGCCTCACTACACTCCCTCCCCGGCTC
CCACCTCCTCCATCCCCCCCTCGGCGCCGGTTCCCGCCCGTTCGGCCCAT
CCTGCCGGGTACCCAGGCACGAGCGGGGGCATGGAGGGATTCGATCAGAT
GACAGGAGGGAGAGAAGGTGGGACCAATGCCGCGGAGACGCTGCAGTCGC
TATTTTCCGCCGCTCCTCGCCTGCCGAGGCCCCTCGGTCCACAAGCTCCA
GAGGGGGGGAGGAGCAGGCCTGAGATAGGCAGTTTCACATTGCCAGCGTC
GGCCACTTCACGCGCTGTCCCTTATTCCCATTCGCAAGCGCATTATCACT
CGCAAGCTCGGCAGCCAGCACAGCAGCGGCAAGACGGACCGCAAGGGACC
TTGCCCCAGTCTGACCTCTACTTGCCACAGCATCACTCAATTTTCTCGAC
CGCAGCGCGCCTTCTGGAGCAGCAAAAGATTCAAAGGCAACAGCAGAGAC
AGCGTGAACAACAGCCTCAATTGGAGCAAGGACACCACCAGCAACGACAG
CAGCGGCAACAACCACGGTATTAACAGAAATATTGCGCGAATTCACTCGT
CCATGGACAGAGCTACTTATTCAAGCAGGCAAGACTGTCCTATTAGGAGG
CTTACGACGAAAAACAGTAAACGACAATTTTTCATAAAACTACTCACTAC
GGATCAAGAGTTTCTCCTTACTGCTGCTGGCTTATACCAGTTAATCAGGA
AGAGAAACAGTGGTCTGTGTGCAGGGCCTTTGCCCCGAACTTTCTGCTCT
ACAGTACCTCAAAATATTTTGACTTTTTTTCTCCGCTTCACAACGACAAA
TTGGACTGGCGACGAACACAAATATATGGACCTCTTTCGAATGACTACAT
GTTACGCCATACATTGAGGAAATCGACTGATAATGATTTTTGAAACCTCT
TGATCTTCAGGCCAGAAAATTCAAGTGACACGCCGAATTGAGCATGAAGA
AAGGGTTGCATGGAAAATCAAAGCATTTTATGGATGTGCGGAGGGATATG
GAACGTGTGAGTGCCACTATGATATGAGTACGCACAAAGCGGGCAGTGCC
GGGTAGAGAATAAAGGATGTCGAGCGACATGGATGCAATCCACGCGTCCC
GAAGACGCGTTCTATGTGCCCAGGCACACTCATGACATGTCGGAGAACAC
AAAAGGACAGGGGAAATGTGTGAAGCACAAAGATAGGAGATGAGAAAGCG
ATGCCCCGGCGATTGAGCGAATAAATGCGAGGAATGGGGAGAAGCTCTTT
CATATTCGCATCAACCAACGTGACCTGATTCATTGTAAACACCACCTTCA
TGAATTAAGCTCAAAACTGGAGACAATTTTGGTAGAGAGCAAAAGTATTG
AAGTCCAAGGATCTTAATTTCTGAAGGGCCCCCCGTTAGGCGCTTATACA
TGCGCGAAAATTATTCTAAATGAAGCCGACTAAAAATATAAAGAGACTAT
GTGGTTCCTTGGTAACCGCGATTAGAGGAAAGAAAAGGTAACCCTAACCC
TAACAGCGCACTAAAACTATTCTGA back to topprotein sequence of rna5842 >rna5842-protein ID=rna5842-protein|Name=rna5842|organism=Nannochloropsis gaditana|type=polypeptide|length=187bp
MCRIHPSQEEEVENDKAEAEGEARHSPGTGGTSHWCPPRRLQSRSHPPMK
PHQGCGESRGQDDGPAGRPERRAGVVGGAHGARACAAQPGIRRAAIQSEV
GTDDGCVGGPVEEGSFGGRAVERCGCARDVADALETGQGKACGMWGLGRS
AAGIDAAVAACGNDSLVLAAPGSNSVVADGVPVAPDD back to topmRNA from alignment at CM002466.1:973514..978238+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5842 ID=rna5842|Name=rna5842|organism=Nannochloropsis gaditana|type=mRNA|length=4725bp|location=Sequence derived from alignment at CM002466.1:973514..978238+ (Nannochloropsis gaditana)
agggctgTCACACGACAAATCACGAAATTGGATGCTTGCTTTTATTACTT
TTGTGTCGTTCACAAATATTTAAGGCTTTGAAGATTTAATCGCATAGTGC
ATAATATAGATATAACAATTTAccactcctccacccccttgaCGCATCCC
CCTActcctcgcttttccccctgttCTCTCGCGCAACTCCTGCTCTCGAC
AGGAAGCGGACGCCTTTAATTGCATTTTTACGTTCTGTCTGTTTTTCCCT
TGTCAAGTTGAAAATGAATTTGTCTTTTCCGATACTTCTCTCTGCGGAAA
ATTTCAATGAGTGCTATCTCGTCCATTCTTTGCCGCTTGAGCTTTCGCGT
TGAAGCCCATCACGGGATGCAGAGACGCGTGCCAAGCAACCGGCGCAAGA
TGCTCCCAAATTAAAAGGAACAATGAGGCGATACCATGATAACTTCAGTG
GTGTTCTTCTTGCCAATTGCAAGGAAAGAATGTCAGGAACGCTTGCAGAC
TTTTCATGGAAAGAGGAACTTGAAAAGCAAGTAAGATAACAAACCAGCCT
ACAGGTCCCCACTTTGGAAAGTGAAATGACGGATTCATATGCACCGCAGT
GCACTGCAATGGGTTTGGCTTCTCTTCTTCGCATGCCTGCCACCGCACAG
TTGTTCGAGTACACACAGTCCTTCAAATATAGTGCCGCCCCAATACCAGA
CGCCTCCCACTTCCTCAAGCTCAAAGCACGCATATGTCTGGTAAGTCACT
GGGTAGAGATCTGCTTGAATCTCAGCACCTATACTTTTTTATTCTACTTA
GAAATGGCACTCATCTTGCCAAGGCAGGGGGGTTAATTACCACTCACAAT
GCCACCAATATATTTTTTGCTCATGTTAAAAGTTATCGATTTCGATTTTG
ATCCCTCGGTTTTCCTTGAGTCTCATCATGCTTCATTTGCAAGTTCTGGA
TGGTTTGAGTACTTTTCATCCTTTTTTAAGCGTATGTGTCCCCTTCTCTG
GTTCAGTCTCTCCTCTTGTGCATCCTGAAATTAGCTTCAGGCTTGACAGC
ATAAAGTCGCATCATAAAATCACTCTTATTTTCATGTTCTGTTAAGCTCA
CCTGCATATGTGCCCGCGGCTCATAGGTCGAGTCTATTCTCTCTCTGGCA
CATCTCGGCAGCCTTCACCGCCCTTGATAACCCCCGTCCTGCACGTGGAA
TGAGGCGCATGTCTGCATCACTTGTAAGGCCCATAGGTGAGGCCTCGTCG
CTCCATCTCGCGGGCAGAATAGGGTAAGCGGGGCTGCGGCTGATAGAAAA
AGCGGGTCGGATAGCATAAGGGCCCCTCGTACTTGTCGGGCACGTAGAAG
GTGTAGGGTTTCCCGTAGTAATCGCGGACCCGCACAGCCGGTATCCGGGG
CGGTCGCTGCTGAGGAGGGCTTGTAGATTTCTTTCGAGCACTCTTGCGTT
GACTACGCTTGCTTTCAACACTCCCATGGCTTTGGTTACTTGTGCGGCTG
CTTCCGCTCTTGTCGAGGCTCTTGCCGGACATCCCCGACTGCGGTGTGGC
CTCCTTGGTTGGCCGTTCCTCTTCGCTGTGAGTGTTTAGGTCCACAGGGC
TCTTGACCTGCTGCTCATTATCGGAGGGGCGCCCCgttggaggggaagag
ggtggtgggATGGCCTCGGGATGCACGCTGGCACCGGCAGCCTCTGTCTC
GTGTTGGGTGAGGGGTGTAGGACCAGCTGGCAAAGCCAGAGCCGGGTCGT
CTGTAGGTGCCTTCTGGCCTTGAAGCGCGGGCTCAAGGGAGGGCACCGCT
tggggtggagaggagggaagagtcCCCGTGAAACTTGGCGTTGCATGCGG
GTAGTGCGGTTGCTGCGGGTATGGATGCTGGTGGTAGtatgggaggggca
gggggggggagacgggaggaGTGAAAGGATGGTGAGGCGGCTGCAGCATA
GGAGGCAATCCAGGGGGCGTGTAGTGATAAATCTCCTGTGGATACATCGC
ATGTTGCTGCTCGAAATTGAATGGCATGGGGGGCGTGTGAGGAGGAGTga
aaggatgaagaggcggctgcagcagaggaggagatccaGGGGGTGCGTAT
TGCGGATAGGATTCCGGCGAGGGCTGCCGCTCGTATGACGCTGGTGTCTG
CGTATGGTAGTATGGGACAGGCTGGGGCTGCGACTGCGGCAGGTCGTCGG
GGTAGGTGTAATAGACAGCGCCGTCTCGGTACTCGGACAGGATCGGGGCC
GGCGGGGGAATGTAAGTGCCCACTTCCTGTGCCTCTTTGGTGGCCCCAGC
GCCCTCCGATGGGCCCATGGCCTCTCCgtggctttccttctccgctccct
cttgcgCCCTACCCGCCATATCGGCGTTTTCTGCAAGTGCACCGTCCACA
GGGACATCATCGTCCAAGGGttccttcttcgccgtgCCATGTGCCACGCC
CTGTGTGTCGCCGATCTCCCCAGGCTCTCCCTGCACGGGAATGCGACCCT
CTTCGGGCTCGGGCGTCAATGCACCTGCCATGTTGGAGCCCTCAGTGTCG
ATGGAAGCAGAGAATTCAAGGGACTCATCCCCCAGGATGTTTTGATCAGC
TTGGAGCGGCggtgtggaagaagggggctggggatggcatgctggcgcgg
gcggggactTGAAGTCcacaggcgggggggaagggttcAAGAAATGAACC
GGAGGAGCGGGTGAAAAGGCCAATGTGCCGTATCCACCCGtcacaggagg
aggaagtggagaatGATaaggcggaggcagagggtgAGGCTCGACACTCA
CCGGGTACGGGAGGTACGTCACACTGGTGCCCTCCGCGGCGCCTTCAAAG
CCGTAGCCACCCGCCAATGAAGCCTCACCAAGGCTGTGGGGAGAGCCGTG
GCCAGGATGATGGACCCGCCGGCCGTCCAGAGCGGCGCGCGGGTGTCGTG
GGTGGGGCACACGGTGCCCGTGCTTGCGCTGCCCAGCCAGGGATCCGCCG
GGCTGCGATCCAGTCTGAGGTCGGTACTGACGACGGATGTGTTGGTGGCC
CTGTCGAGGAGGGTAGCtttggtgggagggcggtggaaagGTGTGGCTGC
GCACGTGATGTTGCGGATGCCCTCGAGACAGGTCAGGGTAAGGCTTGTGG
AATGTGGGGTCTTGGAAGAAGTGCTGCTGGAATTGATGCGGCTGTTGCTG
CATGTGGTAATGACTCTCTCGTCCTTGCTGCTCCTGGTTCCAATAGCGTT
GTTGCTGATGGTGTCCCTGTGGCTCCCGATGATTGAATTGCGATAAATGC
TGTTGGTAAGCGGAGGACTCCGGCCATAGAGAGGGACGCCCTAATGCTTG
CAGCGGGGAGAGATGCCCCTGCGCCGGCGCTTGATGGAAAGAGCCATGCC
TCGTGGGCGATCGCGCCCAAAAAAGCTTCGAGGGCTGAGGCGACTGCAGC
AGATGGTGCTGATTGAGTGGCTCGATGGGGACCTGGACAGGAGCCAAGGC
GGCTTCAGTAGGAGAGTCTTTAgtgctggcgggggaggatCCCCctggca
aagaggagggctgCGGCTCAGAGCAATGCTTTGGGACCGCCAAAAGGGAT
CGTTTCAAAAGTGCCTGCTCGCGTGCCAGATTTTTCTGCTCCAGGATTGA
AGGGTCTAGCTCTTGGCGGCGGAGCGCTGCCAGGCGTCGTCGTGCGGCCC
CTGACAAGCGTTTGCGTGACATGGGAGCCGGTGTCGGTTGGGTGGAAAAT
TGGTTTGGCGTTGTTCTGTTTCAAGCAGATGAAGACAGAAAATAAGTATG
AGGCGACGCAAAAGAAACCCGCGATATACAGGTGAGACGTAGTGTGTGCG
TGAAAGCGCAAACAGTATTTAGGTCcaggggaatggaggggcaTGTATTA
TTATGGGACGTCAAAGACAGTAGAGAACCCATGCGTCATTTTCCAACGTA
CGAGAGATGGAGACACCTACCATATGTGAATATCTAATAAGCCTACCCTC
GTCATCTTACCTCGATGAGGCCAAGTCTCATTTTTGACACGGAGAGGCTT
GAACCTCGTGACATACGTTTGCAACAACAATTGTGACATGGCAAAGGGCT
TCAAAACGTCAGGCCGCAACGAACGGCGTCCTGCGGGAGAGAAGTAGGGA
TGGGGCAAGGAACGGTAAAAGGACGGGCGAGAGAACGACAGGGTCTATAG
CCCCTGGTAAGAGCTGTGGACCTGGTCCGAGGCCAGGCAGGGTGGCGGTC
TCCCGCATATTAGAATATTTGCGAGCCATAAACTACATAATTCTGATCTA
GAATAAATCTCACACACCAAACGACGTGTGTTTATGTGGTTTGTTTCATT
ACCGTCAATCGTGTGGAAGCAGCTCGATTGTTTCAAACAGTGAAACGTTC
TTTCAAAGCTGGTGGAtcgatttcccccctcccaaggaCTACTTTGCAGA
AAGTGCAAATAGATTGGATATTTTGGTAAAAACTCATGCGTAAGTACTAG
TACATTGATCGTTCAACTATTAAAATTCGCTttaagaaaagaaaaaggct
cGCCAAAGCCTCCCCTGAGGGACAGTCACCTTTCCTTGAAGAAGAACCAG
GCCTATCACAAACCTGTGTGCCTTGTGAGGCATGCGCTAGGAATTGCAAA
ATATTCACAGAGCCCAGATAATGTACATTCGTGCTATGATCATGGCATTT
CATGCTCTGCTTCAAATCATATAGG back to topCoding sequence (CDS) from alignment at CM002466.1:973514..978238+ >rna5842 ID=rna5842|Name=rna5842|organism=Nannochloropsis gaditana|type=CDS|length=564bp|location=Sequence derived from alignment at CM002466.1:973514..978238+ (Nannochloropsis gaditana)
ATGTGCCGTATCCACCCGtcacaggaggaggaagtggagaatGATaaggc
ggaggcagagggtgAGGCTCGACACTCACCGGGTACGGGAGGTACGTCAC
ACTGGTGCCCTCCGCGGCGCCTTCAAAGCCGTAGCCACCCGCCAATGAAG
CCTCACCAAGGCTGTGGGGAGAGCCGTGGCCAGGATGATGGACCCGCCGG
CCGTCCAGAGCGGCGCGCGGGTGTCGTGGGTGGGGCACACGGTGCCCGTG
CTTGCGCTGCCCAGCCAGGGATCCGCCGGGCTGCGATCCAGTCTGAGGTC
GGTACTGACGACGGATGTGTTGGTGGCCCTGTCGAGGAGGGTAGCtttgg
tgggagggcggtggaaagGTGTGGCTGCGCACGTGATGTTGCGGATGCCC
TCGAGACAGGTCAGGGTAAGGCTTGTGGAATGTGGGGTCTTGGAAGAAGT
GCTGCTGGAATTGATGCGGCTGTTGCTGCATGTGGTAATGACTCTCTCGT
CCTTGCTGCTCCTGGTTCCAATAGCGTTGTTGCTGATGGTGTCCCTGTGG
CTCCCGATGATTGA back to top
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