|
|
Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100322g1.5905.mrna |
| Orig protein id | gnl|cribi|Naga_100322g1.5905 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:970464..973238 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5841 ID=rna5841|Name=rna5841|organism=Nannochloropsis gaditana|type=mRNA|length=1237bp
GAGGCCAGACGGGAAAGTGCAGATGGACAAGATGATCATAAAACCGACGT
CCAGTTAGCCGGGGTACCAACAGCAGGGGCCGTCACGCAAAAAGGAAAAC
ATTGGCCTGCATAACGTCTCGGCTTGGAACAATTCCCACACAATACAGAT
GGCTCCAGTGATCACAGCGGGTAGTACTGCACTCTCTCTGCTGGATGGGC
TGACCTGCGAGTGCTGCAAAAGGGATAAGACAAAATGTAGTCGTCACTGG
CCTTGTGCGCGATGCATACGTCTGAAACAGCCCTGCGTCCTCTCTCAACG
TCGCGTGTCCCGGTTGCTCCAGTCGGGGGCGTGTTTTTCCACTAGTCGGC
TCCAACCCCCCCCCCCGCATGATCAAGGGGTTGGGGGAAGGTTTACGAGC
GCGGGAAGAGGGATGGGCCTGGACAAACAGGTGCTCGCGGCAGCGCGGGA
CAACAGGCTTCTTTCCATCCTCCAGTGTCACGCCGGGGGAATGCGCGCCG
CGGCTGCCCTTGTTGTCGCGTTCCACCGGCTCTTGGCCGACGGTCGGGTC
AACAGGGACCGGGCCATCAATACTCTGCACCTTTGGCACCGAGAGATACG
GCGGATCGGAACGGACGTGACGCTTGGGGCGTTCGAGCAAATATGCCGAG
CTCTGCAACTCAGAGCAGGGGAAAGGAATGAAATCCTGGAGCTCTGTCGA
CCGCCGCGTCTGCTGACGTCCTCCTCGTCGGAAAGTGGATGCGGCACCGG
CCGAACATCGGGAAGCGAGGTGCCTCCAACAGGAGAAGGAAGCGAGGTGC
CTCGAGAAGGAGAAGGCCCCGCCATTCCGCCTTCATCGCGCTACCGACCG
TGTTGTGAAAAAGCGGACCGGTACGACTCGGCGGAATGGAAGCTTTCGCG
CTTGGGTGGGAGCGCGGCAGGGGATGGGGAAGGGGCAAGCGACGGAGGAA
GGGGAGGGAGGGTGATGGATTTGGCGACGTTTCGGTCCATGGACGATCCG
ATGGGCCCAGCCATGCTCATGTGTCTATACGCAGACGGGGAAGGGAAAGA
CCTGGGGCTTCAAGGGGACGACCGGGGGGTCACGCCCGGCGAGGGGATCG
GGGAGGGTGGGGGCGGGCGCGTCAGCCTCAATCAAGTGTTTGAGACCATG
TTCGTCTCCTGCGAGGAGTGGGCCCAGCTAGCGAGTACCCTGCGGGTCAT
TCATGTCTACCTCTTTTTCGGGTGAGGATGGGAGGGC back to topprotein sequence of rna5841 >rna5841-protein ID=rna5841-protein|Name=rna5841|organism=Nannochloropsis gaditana|type=polypeptide|length=319bp
MGEFFARRDADQAKAQAERESGKAESSRSDAEARIALLTAQVLELQKRQQ
EMHKQQEAQQQAVWKQIITDLMGPPVPAGASESRKPGAEGAGGLSYLSRG
GIRGTSTPAAAAPAPEVLPPPRPGLANSAPSSAPPPPGPPFPVRHPPPAC
PATAAAGKSSATQPCQWAGRANDAASTATAPASLGFLSLSLHLLLLHVLL
LLLPFLLPHLFVLDGPAQTLPHPRPRPPPQTLPAWAPASLHSLPGSHLLH
PPLGAGSRPFGPSCRVPRHERGHGGIRSDDRRERRWDQCRGDAAVAIFRR
SSPAEAPRSTSSRGGEEQA back to topmRNA from alignment at CM002466.1:970464..973238+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5841 ID=rna5841|Name=rna5841|organism=Nannochloropsis gaditana|type=mRNA|length=2775bp|location=Sequence derived from alignment at CM002466.1:970464..973238+ (Nannochloropsis gaditana)
aaaGGCTTTCACCCGCGACTTgacccccttcttcgcccacttccgcttct
ccctcctcccggtgcCGGAGCACAACCGGATGGGGGAATGCCTGAGCCTC
CTgcctgcccctgcctgcaAGCGCGTCAGGGAGGTGCCCGGGAACAGGCC
CGGGATCCTGaccaccagcaccaacaCCAGCACCACACCCACCTACTTCC
ACCCGAGCCTCCGAGACCCACGGATCTTAGGCCTGAATGGGgcgggccag
gaggggggatgggagtgGGAGAACCTCTCAGCGTTCGGGAAGGCGGACGG
GCCGGGAGgacagaaggaagaggagggtgggatgaagaggaagcgggctg
GGGAAcatgggatggaggacggggacgcaCGCGCGAAgaattccctccct
ccgcccccaggACACTACCCTCCTTACGCGCTGCCCCCCACCAGCACGGC
TTCGTCCCAGGGCCCCCGGTGGGGGCGTAGGGGGGATCCGGGTCATGCCC
GCCGCCCGCGTCCATGGGGGAATTCTTCGCACGGAGGGATGCAGACCAGG
CTAAGGcccaggcggagagggagagcgggaaggcggaaagCAGTAGAAGC
GATGCGGAGGCGCGCATTGCGCTGTTGACCGCTCAGGTCCTGGAGCTTCA
GAAACGTCAGCAGGAAATGcacaagcagcaggaggcaCAGCAGCAAGCGG
TCTGGAAACAAATCATCACCGACCTGATGGGCCCGCCCGTGCCCGCAGGA
GCGAGCGAGAGCCGCAAGCCCGGGGCtgaaggggcaggaggattGTCGTA
CCTGAGCCGAGGAGGGATCAGAGGGACGTCGACGCCTGCCGCGGCGGCAC
CAGCGCCAGaagtgcttcctcctccccgccctggcttGGCTAATTCCGCA
CCGTCgtcggctcctcccccccccggcccgcccTTTCCTGTACGCCACCC
CCCGCCTGCATgcccagcaacagcagcagctggaaAATCAAGCGCCACCC
AGCCATGCCAGTGGGCCGGACGCGCGAATGATGCCGCCTCAACGGCGACT
GCCCCGGCATCCCTCGGCTtcctcagcctctcccttcacctcctcctcct
ccatgtcctccttctcctcctccccttcctcctcccccacctttTCGTCC
TCGACGGCCCTGCCCAAACATTACCCCATCCCCGCCCAAGACCTCCACCA
CAGACACTCCCTGCCTGGGCCCCTGCCTCACtacactccctccccggctc
ccacctcctccatccccccctcggcGCCGGTTCCCGCCCGTTCGGCCCAT
CCTGCCGGGTACCCAGGCACGAgcgggggcatggagggatTCGATCAGat
gacaggagggagagaaggtgggaCCAATGCCGCGGAGACGCTGCAGTCGC
TATTTTCCGCCGCTCCTCGCCTGCCGAGgcccctcggtccacaagctcca
gagggggggaggagcaggcctgAGATAGGCAGTTTCACATTGCCAGCGTC
GGCCACTTCACGCGCTGTCCCTTATTCCCATTCGCAAGCGCATTATCACT
CGCAAGCTCGGCAGCCAGCACAGCAGCGGCAAGACGGACCGCAAGGGACC
TTGCCCCAGTCTGACCTCTACTTGCCACAGCATCACTCAATTTTCTCGAC
CGCAGCGCGCCTTCTGGAGCAGCAAAAGATTCAAAGGCAACAGCAGAGAC
AGCGTGAACAACAGCCTCAATTGGAGCAAGGACACCACCAGCAACGACAG
CAGCGGCAACAACCACGGTATTAACAGAAATATTGCGCGAATTCACTCGT
CCATGGACAGAGCTACTTATTCAAGCAGGCAAGACTGTCCTATTAGGAGG
CTTACGACGAAAAACAGTAAACGACAATTTTTCATAAAACTACTCACTAC
GGATCAAGAGTTTCTCCTTACTGCTGCTGGCTTATACCAGTTAATCAGGA
AGAGAAACAGTGGTCTGTGTGCAGGGCCTTTGCCCCGAACTTTCTGCTCT
ACAGTACCTCAAAATATTTTGACTTTTTTTCTCCGCTTCACAACGACAAA
TTGGACTGGCGACGAACACAAATATATGGACCTCTTTCGAATGACTACAT
GTTACGCCATACATTGAGGAAATCGACTGATAATGATTTTTGAAACCTCT
TGATCTTCAGGCCAGAAAATTCAAGTGACACGCCGAATTGAGCATGAAGA
AAGGGTTGCATGGAAAATCAAAGCATTTTATGGATGTGCGGAGGGATATG
GAACGTGTGAGTGCCACTATGATATGAGTACGCACAAAGCGGGCAGTGCC
GGGTAGAGAATAAAGGATGTCGAGCGACATGGATGCAATCCACGCGTCCC
GAAGACGCGTTCTATGTGCCCAGGCACACTCATGACATGTCGGAGAACAC
AAAAGGACAGGGGAAATGTGTGAAGCACAAAGATAGGAGATGAGAAAGCG
ATGCCCCGGCGATTGAGCGAATAAATGCGAGGAATGGGGAGAAGCTCTTT
CATATTCGCATCAACCAACGTGACCTGATTCATTGTAAACACCACCTTCA
TGAATTAAGCTCAAAACTGGAGACAATTTTGGTAGAGAGCAAAAGTATTG
AAGTCCAAGGATCTTAATTTCTGAAGGGCCCCCCGTTAGGCGCTTATACA
TGCGCGAAAATTATTCTAAATGAAGCCGACTAAAAATATAAAGAGACTAT
GTGGTTCCTTGGTAACCGCGAttagaggaaagaaaaggtaaccctaaccc
taacagcgCACTAAAACTATTCTGA back to topCoding sequence (CDS) from alignment at CM002466.1:970464..973238+ >rna5841 ID=rna5841|Name=rna5841|organism=Nannochloropsis gaditana|type=CDS|length=960bp|location=Sequence derived from alignment at CM002466.1:970464..973238+ (Nannochloropsis gaditana)
ATGGGGGAATTCTTCGCACGGAGGGATGCAGACCAGGCTAAGGcccaggc
ggagagggagagcgggaaggcggaaagCAGTAGAAGCGATGCGGAGGCGC
GCATTGCGCTGTTGACCGCTCAGGTCCTGGAGCTTCAGAAACGTCAGCAG
GAAATGcacaagcagcaggaggcaCAGCAGCAAGCGGTCTGGAAACAAAT
CATCACCGACCTGATGGGCCCGCCCGTGCCCGCAGGAGCGAGCGAGAGCC
GCAAGCCCGGGGCtgaaggggcaggaggattGTCGTACCTGAGCCGAGGA
GGGATCAGAGGGACGTCGACGCCTGCCGCGGCGGCACCAGCGCCAGaagt
gcttcctcctccccgccctggcttGGCTAATTCCGCACCGTCgtcggctc
ctcccccccccggcccgcccTTTCCTGTACGCCACCCCCCGCCTGCATgc
ccagcaacagcagcagctggaaAATCAAGCGCCACCCAGCCATGCCAGTG
GGCCGGACGCGCGAATGATGCCGCCTCAACGGCGACTGCCCCGGCATCCC
TCGGCTtcctcagcctctcccttcacctcctcctcctccatgtcctcctt
ctcctcctccccttcctcctcccccacctttTCGTCCTCGACGGCCCTGC
CCAAACATTACCCCATCCCCGCCCAAGACCTCCACCACAGACACTCCCTG
CCTGGGCCCCTGCCTCACtacactccctccccggctcccacctcctccat
ccccccctcggcGCCGGTTCCCGCCCGTTCGGCCCATCCTGCCGGGTACC
CAGGCACGAgcgggggcatggagggatTCGATCAGatgacaggagggaga
gaaggtgggaCCAATGCCGCGGAGACGCTGCAGTCGCTATTTTCCGCCGC
TCCTCGCCTGCCGAGgcccctcggtccacaagctccagagggggggagga
gcaggcctgA back to top
|