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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100882g2.6797.mrna |
| Orig protein id | gnl|cribi|Naga_100882g2.6797 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:961043..963010 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5837 ID=rna5837|Name=rna5837|organism=Nannochloropsis gaditana|type=mRNA|length=1364bp
ACGGACTCACCACTGCTTATTCGAATGTTGCGAAAAACTGATCAAGGATG
CCTCTTCTGCCTCATTCCTCCTCTTGTATGCACAAATGCGGACGGAATGG
CAATAGCAGGGGGCGACGCGATGGCGATAGCGGAGTTTTAGGAAGTCAAG
CCATGGGGTGGTGGTCTCCATGCACAAGCATTAACCAATGCCTTCATTTC
ATCGCTTTGTCTCTTTTCTACTTGTCTTGTTGCGGCTACTTCTCGCGCCT
GCTTTCGCCCCCGCTCCGCCAACCTCCTCCCCCTCTAACCATGCCAAGGC
CATCGTCAAAACGGCATCCAGGAATAATAAGCAGCTTATACAGCCTATCC
GGGCTGTAACGCAGACTGGCACACTTGCTGAGACGGTCGGCGGCGGTTGG
GCAGGTTGGGAGTGTCACTTTTCATTCTCCTCCGGCCTGGTATTGCCAGT
CCCCGCGGACGACTTGCCCGAAGCCCTTCGCGAGTGGGAAGTTGCGGTGT
GGGGGTGGGAGGGTTTCGCGTACGACGCTGTCAGGGAGGATGAAGGGACT
GTGGACATTGAGCGAAGAGCAGCACGGTTCATGGTGGAGGCCGGCTGTGG
CTGTGAGAACGTAGGGAAGCAGAAAAGCCACCAGCGACTCCAGCCCTTGG
CCTGGGCCCGCGGTGGTCTCGGATACGTGACGGCCGACCGGCTCACAGAC
TCCCTCCTTCGCCTGGAAGCAGCCCTGTCCTCCCCCCCTTCCTCCTTCCC
CTCCTCTACCCCTTCGGCATCCGCACCGGCCGCCAGACGCGCCCGGGTCA
TCCTCGACCTTCGGTGCCCCCCTGTCCCTCCTTCAACCCCCATGTCGAGC
CCCCAAGGCGCCTTTGTGTGCTCTGTCCGAGACCCTGTCCGCCTCTACCT
CGAGCGACGCTTCACGTCAGCCTTGCCGGCCACGGATCCCTTCAAAGCTG
CCATTGACCAGACCAGCATCTCCCGGCATGTGGGCGTCCCTTGCTTTGGA
GAGCCAGAGAGAGGGGCAGCGGGAAGAGAATGGGGAGGGAGTGGGGTGTG
GGTGAGGTGGAGGGAAGACAGAGAAGTTTTGGAGGTAGGGTGGCGGCCCG
AGGTGGCGAGGGGGCAGGAAGGTGAAGCAGGGGTAGAGGAAAAGAAGGGG
ATGGCGTGGCGCATTAGGCTAGGGCAAGAGGAATGCAAGGTAGTTGACTG
TGAATGGGTCGAGAACGTGACAGGATAGGGTGGGCGACTGCATGCTGGGA
AAAGAAAACAAGCAAGGACGTGGCGAATCACAAGAAAAATATATATGTAG
CAGCTAGTCACTTTCAAGAAAGACGGATGGAGCTTCATTTTTAATCAAGA
TAACGTTCTACTGA back to topprotein sequence of rna5837 >rna5837-protein ID=rna5837-protein|Name=rna5837|organism=Nannochloropsis gaditana|type=polypeptide|length=346bp
MPSFHRFVSFLLVLLRLLLAPAFAPAPPTSSPSNHAKAIVKTASRNNKQL
IQPIRAVTQTGTLAETVGGGWAGWECHFSFSSGLVLPVPADDLPEALREW
EVAVWGWEGFAYDAVREDEGTVDIERRAARFMVEAGCGCENVGKQKSHQR
LQPLAWARGGLGYVTADRLTDSLLRLEAALSSPPSSFPSSTPSASAPAAR
RARVILDLRCPPVPPSTPMSSPQGAFVCSVRDPVRLYLERRFTSALPATD
PFKAAIDQTSISRHVGVPCFGEPERGAAGREWGGSGVWVRWREDREVLEV
GWRPEVARGQEGEAGVEEKKGMAWRIRLGQEECKVVDCEWVENVTG back to topmRNA from alignment at CM002466.1:961043..963010- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5837 ID=rna5837|Name=rna5837|organism=Nannochloropsis gaditana|type=mRNA|length=1968bp|location=Sequence derived from alignment at CM002466.1:961043..963010- (Nannochloropsis gaditana)
ACGGACTCACCACTGCTTATTCGAATGTTGCGAAAAACTGATCAAGGATG
CCTCTTCTGCCTCATTCCTCCTCTTGTATGCACAAATGCGGACGGAATGG
CAATAGCAGGGGGCGACGCGATGGCGATAGCGGAGTTTTAGGAAGTCAAG
CCATGGGGTGGTATGTCATGAAAATATATCCAAAAGACCCAGCATTGTTG
CGTGAGAACATCCATCGACTTTCCCGTTGGCGTATGAGCGGATGTGTGGG
AGTATGTGCGGCTTCCTTCTGACGTTTCGCACGGCCTCGTTGAACCCTGT
CGTTTTATTTTAATCTCAGCTCTTAGTGTCGACATTCCCGCGCACTGACT
TCCCATGGCCTACAGGTGGTCTCCATGCACAAGCATTAACCAATGCCTTC
ATTTCATCGCTTTGTCTCTTTTCTACTTGTCTTGTTGCGGCTACTTCTCG
CGCCTGCTTTCGCCCCCGCTCCGCCAACCTCCTCCCCCTCTAACCATGCC
AAGGCCATCGTCAAAACGGCATCCAGGAATAATAAGCAGCTTATACAGCC
TATCCGGGCTGTAACGCAGACTGGCACACTTGCTGAGACGGTCGGCGGCG
GTTGGGCAGGTAAGAAGCAGTGACCTTTACGATTGGTGTGATCAGGGGTC
TATAGAGGTCTCCCTCCTTACCGGGCTCCGACCAGGCTTCTGCCAGGATC
ACTCACCACCTCTTACGGCGAAAACAGGTTGGGAGTGTCACTTTTCATTC
TCCTCCGGCCTGGTATTGCCAGTCCCCGCGGACGACTTGCCCGAAGCCCT
TCGCGAGTGGGAAGTTGCGGTGTGGGGGTGGGAGGGTTTCGCGTACGACG
CTGTCAGGTGAGCCGAGACAAGGAGAGGGAAAACGATGACCGTGAAAAAA
AACAAAACACGTACTCCAATGTGATCGCTCGGCACCAGGGAGGATGAAGG
GACTGTGGACATTGAGCGAAGAGCAGCACGGTTCATGGTGGAGGCCGGCT
GTGGCTGTGAGAACGTAGGGAAGCAGGTGCGTGTGCCTATAAGAGGGCTT
CCTCCCGTGGTAGATCCGGCGGTGTCTGCGCCAGCATTCATGGGGTTGTC
TTCGACCCAGAGGGGTGCCTCCATTTCCATCACCTGTCCCCCGAACCTCC
CGTTCCCTCGTCCCCCGACACCCCCCCCCCGGTAAGCCTCGCCTCTCTCA
CCGCATTTTCGTCCTCACAAATATAGAAAAGCCACCAGCGACTCCAGCCC
TTGGCCTGGGCCCGCGGTGGTCTCGGATACGTGACGGCCGACCGGCTCAC
AGACTCCCTCCTTCGCCTGGAAGCAGCCCTGTCCTCCCCCCCTTCCTCCT
TCCCCTCCTCTACCCCTTCGGCATCCGCACCGGCCGCCAGACGCGCCCGG
GTCATCCTCGACCTTCGGTGCCCCCCTGTCCCTCCTTCAACCCCCATGTC
GAGCCCCCAAGGCGCCTTTGTGTGCTCTGTCCGAGACCCTGTCCGCCTCT
ACCTCGAGCGACGCTTCACGTCAGCCTTGCCGGCCACGGATCCCTTCAAA
GCTGCCATTGACCAGACCAGCATCTCCCGGCATGTGGGCGTCCCTTGCTT
TGGAGAGCCAGAGAGAGGGGCAGCGGGAAGAGAATGGGGAGGGAGTGGGG
TGTGGGTGAGGTGGAGGGAAGACAGAGAAGTTTTGGAGGTAGGGTGGCGG
CCCGAGGTGGCGAGGGGGCAGGAAGGTGAAGCAGGGGTAGAGGAAAAGAA
GGGGATGGCGTGGCGCATTAGGCTAGGGCAAGAGGAATGCAAGGTAGTTG
ACTGTGAATGGGTCGAGAACGTGACAGGATAGGGTGGGCGACTGCATGCT
GGGAAAAGAAAACAAGCAAGGACGTGGCGAATCACAAGAAAAATATATAT
GTAGCAGCTAGTCACTTTCAAGAAAGACGGATGGAGCTTCATTTTTAATC
AAGATAACGTTCTACTGA back to topCoding sequence (CDS) from alignment at CM002466.1:961043..963010- >rna5837 ID=rna5837|Name=rna5837|organism=Nannochloropsis gaditana|type=CDS|length=4164bp|location=Sequence derived from alignment at CM002466.1:961043..963010- (Nannochloropsis gaditana)
AAAAGCCACCAGCGACTCCAGCCCTTGGCCTGGGCCCGCGGTGGTCTCGG
ATACGTGACGGCCGACCGGCTCACAGACTCCCTCCTTCGCCTGGAAGCAG
CCCTGTCCTCCCCCCCTTCCTCCTTCCCCTCCTCTACCCCTTCGGCATCC
GCACCGGCCGCCAGACGCGCCCGGGTCATCCTCGACCTTCGGTGCCCCCC
TGTCCCTCCTTCAACCCCCATGTCGAGCCCCCAAGGCGCCTTTGTGTGCT
CTGTCCGAGACCCTGTCCGCCTCTACCTCGAGCGACGCTTCACGTCAGCC
TTGCCGGCCACGGATCCCTTCAAAGCTGCCATTGACCAGACCAGCATCTC
CCGGCATGTGGGCGTCCCTTGCTTTGGAGAGCCAGAGAGAGGGGCAGCGG
GAAGAGAATGGGGAGGGAGTGGGGTGTGGGTGAGGTGGAGGGAAGACAGA
GAAGTTTTGGAGGTAGGGTGGCGGCCCGAGGTGGCGAGGGGGCAGGAAGG
TGAAGCAGGGGTAGAGGAAAAGAAGGGGATGGCGTGGCGCATTAGGCTAG
GGCAAGAGGAATGCAAGGTAGTTGACTGTGAATGGGTCGAGAACGTGACA
GGATAGGGAGGATGAAGGGACTGTGGACATTGAGCGAAGAGCAGCACGGT
TCATGGTGGAGGCCGGCTGTGGCTGTGAGAACGTAGGGAAGCAGGTTGGG
AGTGTCACTTTTCATTCTCCTCCGGCCTGGTATTGCCAGTCCCCGCGGAC
GACTTGCCCGAAGCCCTTCGCGAGTGGGAAGTTGCGGTGTGGGGGTGGGA
GGGTTTCGCGTACGACGCTGTCAGATGCCTTCATTTCATCGCTTTGTCTC
TTTTCTACTTGTCTTGTTGCGGCTACTTCTCGCGCCTGCTTTCGCCCCCG
CTCCGCCAACCTCCTCCCCCTCTAACCATGCCAAGGCCATCGTCAAAACG
GCATCCAGGAATAATAAGCAGCTTATACAGCCTATCCGGGCTGTAACGCA
GACTGGCACACTTGCTGAGACGGTCGGCGGCGGTTGGGCAGAAAAGCCAC
CAGCGACTCCAGCCCTTGGCCTGGGCCCGCGGTGGTCTCGGATACGTGAC
GGCCGACCGGCTCACAGACTCCCTCCTTCGCCTGGAAGCAGCCCTGTCCT
CCCCCCCTTCCTCCTTCCCCTCCTCTACCCCTTCGGCATCCGCACCGGCC
GCCAGACGCGCCCGGGTCATCCTCGACCTTCGGTGCCCCCCTGTCCCTCC
TTCAACCCCCATGTCGAGCCCCCAAGGCGCCTTTGTGTGCTCTGTCCGAG
ACCCTGTCCGCCTCTACCTCGAGCGACGCTTCACGTCAGCCTTGCCGGCC
ACGGATCCCTTCAAAGCTGCCATTGACCAGACCAGCATCTCCCGGCATGT
GGGCGTCCCTTGCTTTGGAGAGCCAGAGAGAGGGGCAGCGGGAAGAGAAT
GGGGAGGGAGTGGGGTGTGGGTGAGGTGGAGGGAAGACAGAGAAGTTTTG
GAGGTAGGGTGGCGGCCCGAGGTGGCGAGGGGGCAGGAAGGTGAAGCAGG
GGTAGAGGAAAAGAAGGGGATGGCGTGGCGCATTAGGCTAGGGCAAGAGG
AATGCAAGGTAGTTGACTGTGAATGGGTCGAGAACGTGACAGGATAGGGA
GGATGAAGGGACTGTGGACATTGAGCGAAGAGCAGCACGGTTCATGGTGG
AGGCCGGCTGTGGCTGTGAGAACGTAGGGAAGCAGGTTGGGAGTGTCACT
TTTCATTCTCCTCCGGCCTGGTATTGCCAGTCCCCGCGGACGACTTGCCC
GAAGCCCTTCGCGAGTGGGAAGTTGCGGTGTGGGGGTGGGAGGGTTTCGC
GTACGACGCTGTCAGATGCCTTCATTTCATCGCTTTGTCTCTTTTCTACT
TGTCTTGTTGCGGCTACTTCTCGCGCCTGCTTTCGCCCCCGCTCCGCCAA
CCTCCTCCCCCTCTAACCATGCCAAGGCCATCGTCAAAACGGCATCCAGG
AATAATAAGCAGCTTATACAGCCTATCCGGGCTGTAACGCAGACTGGCAC
ACTTGCTGAGACGGTCGGCGGCGGTTGGGCAGAAAAGCCACCAGCGACTC
CAGCCCTTGGCCTGGGCCCGCGGTGGTCTCGGATACGTGACGGCCGACCG
GCTCACAGACTCCCTCCTTCGCCTGGAAGCAGCCCTGTCCTCCCCCCCTT
CCTCCTTCCCCTCCTCTACCCCTTCGGCATCCGCACCGGCCGCCAGACGC
GCCCGGGTCATCCTCGACCTTCGGTGCCCCCCTGTCCCTCCTTCAACCCC
CATGTCGAGCCCCCAAGGCGCCTTTGTGTGCTCTGTCCGAGACCCTGTCC
GCCTCTACCTCGAGCGACGCTTCACGTCAGCCTTGCCGGCCACGGATCCC
TTCAAAGCTGCCATTGACCAGACCAGCATCTCCCGGCATGTGGGCGTCCC
TTGCTTTGGAGAGCCAGAGAGAGGGGCAGCGGGAAGAGAATGGGGAGGGA
GTGGGGTGTGGGTGAGGTGGAGGGAAGACAGAGAAGTTTTGGAGGTAGGG
TGGCGGCCCGAGGTGGCGAGGGGGCAGGAAGGTGAAGCAGGGGTAGAGGA
AAAGAAGGGGATGGCGTGGCGCATTAGGCTAGGGCAAGAGGAATGCAAGG
TAGTTGACTGTGAATGGGTCGAGAACGTGACAGGATAGGGAGGATGAAGG
GACTGTGGACATTGAGCGAAGAGCAGCACGGTTCATGGTGGAGGCCGGCT
GTGGCTGTGAGAACGTAGGGAAGCAGGTTGGGAGTGTCACTTTTCATTCT
CCTCCGGCCTGGTATTGCCAGTCCCCGCGGACGACTTGCCCGAAGCCCTT
CGCGAGTGGGAAGTTGCGGTGTGGGGGTGGGAGGGTTTCGCGTACGACGC
TGTCAGATGCCTTCATTTCATCGCTTTGTCTCTTTTCTACTTGTCTTGTT
GCGGCTACTTCTCGCGCCTGCTTTCGCCCCCGCTCCGCCAACCTCCTCCC
CCTCTAACCATGCCAAGGCCATCGTCAAAACGGCATCCAGGAATAATAAG
CAGCTTATACAGCCTATCCGGGCTGTAACGCAGACTGGCACACTTGCTGA
GACGGTCGGCGGCGGTTGGGCAGAAAAGCCACCAGCGACTCCAGCCCTTG
GCCTGGGCCCGCGGTGGTCTCGGATACGTGACGGCCGACCGGCTCACAGA
CTCCCTCCTTCGCCTGGAAGCAGCCCTGTCCTCCCCCCCTTCCTCCTTCC
CCTCCTCTACCCCTTCGGCATCCGCACCGGCCGCCAGACGCGCCCGGGTC
ATCCTCGACCTTCGGTGCCCCCCTGTCCCTCCTTCAACCCCCATGTCGAG
CCCCCAAGGCGCCTTTGTGTGCTCTGTCCGAGACCCTGTCCGCCTCTACC
TCGAGCGACGCTTCACGTCAGCCTTGCCGGCCACGGATCCCTTCAAAGCT
GCCATTGACCAGACCAGCATCTCCCGGCATGTGGGCGTCCCTTGCTTTGG
AGAGCCAGAGAGAGGGGCAGCGGGAAGAGAATGGGGAGGGAGTGGGGTGT
GGGTGAGGTGGAGGGAAGACAGAGAAGTTTTGGAGGTAGGGTGGCGGCCC
GAGGTGGCGAGGGGGCAGGAAGGTGAAGCAGGGGTAGAGGAAAAGAAGGG
GATGGCGTGGCGCATTAGGCTAGGGCAAGAGGAATGCAAGGTAGTTGACT
GTGAATGGGTCGAGAACGTGACAGGATAGGGAGGATGAAGGGACTGTGGA
CATTGAGCGAAGAGCAGCACGGTTCATGGTGGAGGCCGGCTGTGGCTGTG
AGAACGTAGGGAAGCAGGTTGGGAGTGTCACTTTTCATTCTCCTCCGGCC
TGGTATTGCCAGTCCCCGCGGACGACTTGCCCGAAGCCCTTCGCGAGTGG
GAAGTTGCGGTGTGGGGGTGGGAGGGTTTCGCGTACGACGCTGTCAGATG
CCTTCATTTCATCGCTTTGTCTCTTTTCTACTTGTCTTGTTGCGGCTACT
TCTCGCGCCTGCTTTCGCCCCCGCTCCGCCAACCTCCTCCCCCTCTAACC
ATGCCAAGGCCATCGTCAAAACGGCATCCAGGAATAATAAGCAGCTTATA
CAGCCTATCCGGGCTGTAACGCAGACTGGCACACTTGCTGAGACGGTCGG
CGGCGGTTGGGCAG back to top
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