rna5833, rna5833 (mRNA) Nannochloropsis gaditana

Overview
Namerna5833
Unique Namerna5833
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length293
Alignment locationCM002466.1:954295..955972 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101492g2.10084.mrna
Orig protein idgnl|cribi|Naga_101492g2.10084
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:954295..955972 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101492g2gene5632Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24855.1cds5818Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5833rna5833-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5833 ID=rna5833|Name=rna5833|organism=Nannochloropsis gaditana|type=mRNA|length=293bp
ATGCTTGCGACAATCCGGACGAGCTACGCGAGACACAAATACCCGCGAGC
GGATAAAGAAGAGCAGGATGGTCGTGTACAATTTCAAGAAGATCCAGCCC
GTGCCGTCGGCAGGGGATTTTGTGGACATTGTCTTGACGCGCACGCAGCG
GAAGACACCCACTGTCGTCCATCCTGGTTACAAGATCTCACGCATTCGGG
CGTTTTACATGCGTAAGGTCAAATTTACCCAGCAAACTTACTCGGAGCGG
CTACGGCAAATCTTGGCAGATTTCCCCCGGGTGGAGGTATGCT
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protein sequence of rna5833

>rna5833-protein ID=rna5833-protein|Name=rna5833|organism=Nannochloropsis gaditana|type=polypeptide|length=143bp
MFSGAPRGGGDHGWCPGECSNDTPLSHTSLAILDPTSILEAVSLRLLTPP
SVFLFLLPTIPAVLPQGLAGVLGDKPSLPPSLPPSVRHCRPRFQSPICPH
VHTGRDPSINQHAAHGTGRGALGRKKGREGGREGGREGMRDGR
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mRNA from alignment at CM002466.1:954295..955972-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5833 ID=rna5833|Name=rna5833|organism=Nannochloropsis gaditana|type=mRNA|length=1678bp|location=Sequence derived from alignment at CM002466.1:954295..955972- (Nannochloropsis gaditana)
AAGGCGTCTTCCTTTTCCACCACACTCTCATCCTCCGAGTCACTGCCAAG
CCCCAGGTCCTCTATCACGTCCTTTGATGCCATGCCTACAGGGTGAACGC
AATCTTGGGAATGCGTGTTTCGGGGGCCTACGTCTGTCGGGAAGAAGGAA
GCTTCATCAGGTCATTCACATGTGCGGCCCAACGCCTTCCGGCATGTGCG
GGACACACCGGCGTCACAGTGCCTTAAAATTGTATACGACCACTTCCTGG
GAGGATTACTCCCTCATATCATCACCCGTTGTCCCAATCTATGTGGAACT
CACTCGAATTGAGTCCTGAAAATTTTCCTTGGGAGGGAATACGGTGGGGC
AAGTCGCTCCGGCCTCTCTGATAGAGGGTATTGATACGCCTTGGCATTGA
AGCCCTTTTTGCATATTCCACTTTTATTTTTCTCTCCACACAGCAATCTG
ACCGTTGTATGTACCTGTATACATGACACCGGTGCATTTTTCCTAACTAC
ATTCCTCTCCGCCCTCACAACACGTCCAGTAGCATAACCAAGTGTACGCC
ACCAGGAGGTTGCAGCTTACCAAAGACTGCCTTCAAGCCCAGGCGTTCAT
ACAGCTCGCTCACACATTGCGTACAACGCATTTCCCGAATGGAAATGTAA
GAATCTCTGGGGGGTTGGTGTGAGTGACAGGTCTGGTCCGACCCCTTCCT
GGGATCAACTCACTTAACCCCTGTGCTCACTCTCCTGCGCCAAAACTCTT
TTCAAGCCCGTTACTGCGATACTATATCCTGTTACGATTAAAGCATCCAT
AAGAGATGTTTTATGGCTTTTCTGACCCTTTGATTCATTGTTTTTTCCCT
TCTCTTCTAGCTTGTCGACGAATGACGGCCTGATCACCGACCTAGACGCC
TTCTTGCTTATAAAAGAAAGGACAGCCAAGCGCGAGTCAGACAAGGGGGT
GAAAGGGCGAAAAGGTGATGTCCGATCACAAAAGACACTGACCAAAAATA
GGGACTGGGTCCAGAAGGAGGTAACGAAAGGGAGGGAGAGGGTGGAGGGA
ATGAGGGCCGAAGGGGGGGGGGAAGAGGAGGAGTAACGGAGGGAGGGAAG
GGAAGAGAAAGAAACGAATCAAGACCGGCGAAAAACGTTAAGAGCATGTA
ACAGAGAGATGAAGACACGCCATCCTGGCATCCCGACACGGCACAGATAC
TCCGATGTTTAGCGGAGCTCCCCGCGGGGGGGGAGACCACGGTTGGTGTC
CAGGTGAGTGCTCGAACGACACGCCCCTTTCCCATACCTCCCTTGCCATT
TTGGACCCAACGTCGATCCTAGAAGCCGTGTCTTTGCGCCTTCTTACGCC
CCCTTCCGTCTTCCTCTTCCTCCTCCCCACCATCCCTGCAGTCCTTCCTC
AAGGCCTTGCAGGCGTTCTCGGTGACAAGCCCTCCCTCCCTCCCTCCCTC
CCTCCTTCCGTCCGGCACTGCCGCCCCCGCTTTCAATCGCCAATCTGCCC
GCACGTTCACACTGGCCGAGACCCTTCAATTAATCAACATGCGGCCCACG
GCACCGGTAGAGGTGCACTTGGTAGGAAGAAAGGGAGGGAAGGAGGGAGG
GAGGGAGGGAGGGAGGGAATGAGAGATGGTAGGTAAGACGTGCATGTATG
GATGCGGACGAGGGATGGGGAGGATGGA
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Coding sequence (CDS) from alignment at CM002466.1:954295..955972-

>rna5833 ID=rna5833|Name=rna5833|organism=Nannochloropsis gaditana|type=CDS|length=432bp|location=Sequence derived from alignment at CM002466.1:954295..955972- (Nannochloropsis gaditana)
ATGTTTAGCGGAGCTCCCCGCGGGGGGGGAGACCACGGTTGGTGTCCAGG
TGAGTGCTCGAACGACACGCCCCTTTCCCATACCTCCCTTGCCATTTTGG
ACCCAACGTCGATCCTAGAAGCCGTGTCTTTGCGCCTTCTTACGCCCCCT
TCCGTCTTCCTCTTCCTCCTCCCCACCATCCCTGCAGTCCTTCCTCAAGG
CCTTGCAGGCGTTCTCGGTGACAAGCCCTCCCTCCCTCCCTCCCTCCCTC
CTTCCGTCCGGCACTGCCGCCCCCGCTTTCAATCGCCAATCTGCCCGCAC
GTTCACACTGGCCGAGACCCTTCAATTAATCAACATGCGGCCCACGGCAC
CGGTAGAGGTGCACTTGGTAGGAAGAAAGGGAGGGAAGGAGGGAGGGAGG
GAGGGAGGGAGGGAATGAGAGATGGTAGGTAA
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Synonyms
Publications