rna5827, rna5827 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5827
Unique Name	rna5827
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1673
Alignment location	CM002466.1:945106..947877 -

Link to JBrowse

Properties


Property Name	Value
Product	flavohemoprotein
Orig transcript id	gnl\|cribi\|Naga_100381g3.8976.mrna
Orig protein id	gnl\|cribi\|Naga_100381g3.8976
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:945106..947877 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100381g3	gene5627	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24861.1	cds5812	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5827	rna5827-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:945106..947877-
coding sequence from alignment at CM002466.1:945106..947877-

mRNA sequence

>rna5827 ID=rna5827|Name=rna5827|organism=Nannochloropsis gaditana|type=mRNA|length=1673bp
GTCATTGCTCGATCAACGATGTATGCATTGCCTCCAGCACCTCGCATTAC
TTCAAAACTTTCGTGCTACATGTCGCATCCGGAGTCCACTTTCACCTTAC
CCATCCTTACCCTTTTTCCATGTCCACTGTCTATTTTCTCTCAACAAATT
CTCTCAGTCTGTGGGATCAATGGCAATAACTAATCCTTACCCTTTTTCCA
TGTCCACTGTCTATTTTCTCTCAACAAATTCTCTCAGTCTGTGGGATCAA
TGGCAATAACTCTCCTTTCCATCAATAATTGATTAAATTATCTCCGTTTA
GTCCATCTTTAGGATCGACCAGATCCTTTTTAAAAGGTGCTGCTAGCTCA
ACGGCTGAAGGGGAGAGGACACTTAGGTCAGTATTGCGCGGAAGCACATC
CCACTCTGCGCTTGCAGCCATTTCATTTAATATTTGACCAGTGTGTTGCA
TGTACAAAAGATTGGACGGGGATGGAAACATGGAAATTTCCTCTGATTTT
TGTTTCCCTTCCACAGAGCTTTTACGTCGAAGTGCGCTCTAACAGCTAGC
TTGCCGAGGGCACGTTAGACTCTAAGCCAAGCAGTCGGCTATTTTTACCT
CTGTCGTCCATTTCTGGTGGCACGATCCCGACACACACACGTCAAAGACG
GACATGAACCGCATTTTCGGACAAAAGAAAGTTCAGGCCCCTGCCCCCTC
CCTGGGCGACGCGTCTGGGAAGATAGACGGGCGTTTGAAAGGCCTGGATG
ATAAGATCAAGGCCTTGGACGACGAATTGAGGAAATTTCAAGGCCTAATC
AAGCGGTCTTCGGGCGCCACGCAGGCCAATCATAAGCGCCGAGCCATCGA
TGTATTGAAGCGGAAGAAGATGTACGAACAGCAGAGGGACCAGCTGGCAG
CTCAATCTTTCAACGTCGACCAAACGAACTTTGCCTTAGAGAGCGTCAAG
GACACCATCACGACTGTGGATGCCATGAAAGGAGCGCACAAAGCCCTGAA
AGTGGAGGCCAAGAAAGTCAAGATAGATGACATTGAGGACTTGACGGACG
ACCTGGCGGACATGATGGAGGACATGAACGAGATCAACGATGCTTTAGGC
CGCAACTACGGCGTTTCCGACGAGATCGACGAGGCGGATTTGGACGCGGA
GCTGGCCGGGTTGGAGGATGAGCTGGAAGGACTGGGCGAGACGGAGGGTA
AGGGAAGGGGAAGGGGGGAAAGGGAGGGGCGGGAGGGAGAAGGTGCCAGC
CTGGGTCGGCGCGGCATGGTGGATGGGCCGGGCGTTTGGGGGACAGGGAA
TATTGCCATAAGGGTCGCCGACTCCGCAGGGGGGGCTCCCCCGGCGAAGG
CCCCTGTCCTTTCCTCCTGACACGTTGGTACCCGCCTTTTCCCTCTTTCC
CCCTTTTTCCCCGCCACCGTTGGGTGCGTCCCCCACAGCCGATGCGACCG
CGTCCTCGGCCGAGGCGACCCCTGCCTATCTCTTGCCCAGCGAACCTGTG
AACGCACCTGAAGCCAAAATTGGCGCGCAAACAACCACCGACGAATTTGG
CTTGCCCGTGGCCCCGGTCCACAACTAGGGAGCCCGCGGTATGGGGGGGG
AGGGAGGGGTTGGGGGGGGCCCTGACATGTGCACATGTTTTGTTCAAAGC
AAAAAGAAGTAAAGCGTTGGGTG

protein sequence of rna5827

>rna5827-protein ID=rna5827-protein|Name=rna5827|organism=Nannochloropsis gaditana|type=polypeptide|length=471bp
MHRIVGWDLCLREYADSFTYTPPLVYLPSLMTRFAPNGSHDSARHSASLM
PPASTPSSSSTPAVSPPAASPPLPVLSPHIVSVVKSTAPVLAAQGPRITQ
AFYPLLFSRYPAVQELFNKRNQAPEPDGTPARQPQALANAVWAYAANIDN
LSALSAAVSLIAHKHASLHVLPEHYPMVGECLLAAIAQVLGPEVATVEVL
KAWEQAYGFLAAVFVQTEDGLRSSNARKRHGWTGWKTMRVARKVMESEDV
ASFYLSNVQVGEPVCAYLPGQYISLRLTLPDGEVEERDYSLSEFAVPASA
HALEPGGKARSAEEEGGKKECKGEGRGEDGKEEGDCPPYFRISIKRLPGG
AVSTYMHDKVEEGSEILVGPPYGDFVLAPPCTPSSSPSSHPRPLVLLSAG
IGITPLLCMAEAALLGTPSQESKEHRPSFPKSSSSTRPGTRPISPLRPVL
RALRPHIPPALPATCPSHKEP

mRNA from alignment at CM002466.1:945106..947877-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5827 ID=rna5827|Name=rna5827|organism=Nannochloropsis gaditana|type=mRNA|length=2772bp|location=Sequence derived from alignment at CM002466.1:945106..947877- (Nannochloropsis gaditana)
AACGGGGGAAATGCGGGCACCTTCCAGTTAAAACATATGGATGCTGGGCA
ACCGTCCTTTGCTGCCTTGTGCATGTCGTCTTGCATGAGTTCTTGTATAA
TTCCCCCCTCTTTCTGATCCACTATTTCCGGCTGTCGGTCTTCAAGAGTT
TCGGGCTGCGTTTACTTCAACGCAAACTGCACTTTGATTATGCATCTTGA
GTTACCATGTAGGTACACCACACTTACCTGTTTTACGCATGCTTGGATTA
GATTCTTCTTCTTCTGTAAGAAGAACGAACGGAACTCACTGATGAGGCTA
GAAACGATTCTTGCGTGCCACTATTTTATGGACATGGTCCGAGCTTTGCT
GATCCACGTTTGTTATCTGGGATACGACATGCTCTGAACCATAACCCCCA
AACGCTCTCAATGTCAATCCAAGGGGGCAAGGTAGCCAATTGTGCTGGAC
GATCACTGACAACCAGTTATGTACCAATTACCCTTTCAAGCATTGTGTCA
AAAAATTTCTTCTTTAATGTTATTCGTTGCTGTTCTACGATAGTCGGGCA
GTGGCGGTATATTGATCCGATTGACTGGACATTCGCCGTTGCATTGGCAA
GGCCACACTGCCTCTACCTGGCCAATAAGAATACCTATGATGAATGCACA
GGATCGTGGGCTGGGACCTTTGCCTCCGCGAATATGCTGATAGTTTTACT
TACACCCCACCTCTTGTATACCTACCCTCACTCATGACTAGATTCGCTCC
GAACGGCTCACACGACTCTGCCCGGCATTCAGCAAGCCTCATGCCGCCAG
CCTCCACTCCTTCTTCATCGTCAACGCCTGCTGTTTCCCCCCCAGCCGCT
TCCCCCCCCCTTCCTGTGCTGAGCCCGCATATCGTCTCCGTGGTGAAATC
CACCGCGCCCGTCCTGGCGGCTCAAGGCCCCCGCATCACCCAGGCATTCT
ACCCGCTCCTCTTCTCCCGGTACCCTGCCGTCCAAGAACTCTTCAACAAA
CGCAACCAAGCGCCGGAACCCGATGGGACGCCCGCCCGACAGCCTCAGGC
CTTGGCCAATGCCGTCTGGGCCTACGCGGCCAACATCGATAACCTCTCCG
CCCTCTCCGCGGCCGTCTCCCTGATTGCCCACAAACACGCCTCCCTCCAC
GTCCTCCCCGAGCACTACCCGATGGTTGGAGAGTGCCTCCTGGCGGCCAT
TGCGCAGGTATTGGGTCCCGAGGTGGCGACTGTGGAGGTGCTGAAAGCCT
GGGAGCAAGCGTACGGATTTTTGGCCGCCGTCTTCGTCCAGACAGAGGAC
GGACTCCGGTCCAGCAATGCCCGGAAGCGGCACGGGTGGACGGGGTGGAA
AACCATGCGGGTGGCACGGAAGGTGATGGAATCGGAGGATGTGGCTTCCT
TCTACCTGAGCAATGTGCAGGTCGGGGAGCCCGTGTGCGCCTACCTACCG
GGCCAGTACATCTCCCTCCGCCTGACCCTGCCCGACGGGGAGGTCGAAGA
GCGAGACTACAGTCTGAGCGAGTTTGCTGTACCCGCGTCCGCGCATGCCT
TGGAGCCGGGCGGGAAAGCGCGATCGGCCGAGGAGGAGGGAGGGAAGAAG
GAGTGTAAGGGGGAAGGCCGGGGAGAGGATGGGAAGGAGGAAGGGGATTG
CCCCCCCTATTTCCGCATCAGCATCAAGCGTCTCCCGGGGGGTGCCGTAT
CCACCTACATGCACGACAAGGTGGAGGAGGGAAGCGAGATTCTGGTCGGG
CCACCCTACGGCGACTTTGTCCTCGCCCCTCCCTGTACCCCTTCCTCCTC
CCCCTCCTCGCATCCACGGCCCCTGGTCCTCCTCTCAGCCGGGATTGGCA
TCACTCCCCTGCTTTGCATGGCCGAAGCCGCGTTGCTCGGCACGCCGTCG
CAAGAGAGCAAGGAGCATCGACCCTCTTTCCCTAAGTCTTCTTCCTCCAC
ACGGCCAGGGACGCGGCCCATTTCCCCTTTGCGGCCCGTCTTGCGAGCCT
TGCGGCCACACATCCCACCCGCTTTGCCTGCCACGTGTCCTTCACACAAG
GAGCCGTAGAGGGAGGGGCGGAGGGAGGGAAGGAGGGAAAAGTCCGATGG
GGCACGGGGCGGTTGACGGCGAGCGCCTTACACGAGGCGTTGGGCGGGAA
GGTACGACCGCAGGACTGTAGCTTCTACTTTTGTGGACCGGCGGGGTACA
TGGTGAGCGTTCGACGCTTGTTGACGTGGTTGGGAGTGCCCGCGGAGGAG
GTGAAGTATGAGTGTTTCGGCCCCGCATCGGCCGAGGTGGAGGCGGCGGG
GGTGATACCGTCGAGTTTTTCTTGAGGAGGAGGGAGATGAGGCGAGAAAG
GGAAGGGGGAGGAGGTGGAAGAGAGGCGTGGTGTCGGGAGCAGGGCAAGG
GGTCAAAAATAGGAAATGTGCTCGAAATTGCTTCGGGAAAAATGCAGCCA
GGCAGCTCAACAGTGTATGTGCATAGAGAATTTTCACAATCCCATTGTTC
CATCCTCATGACCATGGGGCGGAACTTGAATGAGTAGGCGACTGGCATGG
AATTACAACAACATTTTGCAGGCAAGGGACGGGCGTTGGAAGTCGACGTC
AGCATCAGCACGCGAACGCCCCACATAGTTTTCAGAAAGACTTGAAATAT
CGATGCATGACAATACAGCATTCCCAAATAAAGAAATCCATCTGATCGCG
CGAGGATACACTGCACTGTCCACGGATCAAACCCCCGCGAGACAACCAAA
GCAAGGGGGCTTTCACTGTATA

Coding sequence (CDS) from alignment at CM002466.1:945106..947877-

>rna5827 ID=rna5827|Name=rna5827|organism=Nannochloropsis gaditana|type=CDS|length=1416bp|location=Sequence derived from alignment at CM002466.1:945106..947877- (Nannochloropsis gaditana)
ATGCACAGGATCGTGGGCTGGGACCTTTGCCTCCGCGAATATGCTGATAG
TTTTACTTACACCCCACCTCTTGTATACCTACCCTCACTCATGACTAGAT
TCGCTCCGAACGGCTCACACGACTCTGCCCGGCATTCAGCAAGCCTCATG
CCGCCAGCCTCCACTCCTTCTTCATCGTCAACGCCTGCTGTTTCCCCCCC
AGCCGCTTCCCCCCCCCTTCCTGTGCTGAGCCCGCATATCGTCTCCGTGG
TGAAATCCACCGCGCCCGTCCTGGCGGCTCAAGGCCCCCGCATCACCCAG
GCATTCTACCCGCTCCTCTTCTCCCGGTACCCTGCCGTCCAAGAACTCTT
CAACAAACGCAACCAAGCGCCGGAACCCGATGGGACGCCCGCCCGACAGC
CTCAGGCCTTGGCCAATGCCGTCTGGGCCTACGCGGCCAACATCGATAAC
CTCTCCGCCCTCTCCGCGGCCGTCTCCCTGATTGCCCACAAACACGCCTC
CCTCCACGTCCTCCCCGAGCACTACCCGATGGTTGGAGAGTGCCTCCTGG
CGGCCATTGCGCAGGTATTGGGTCCCGAGGTGGCGACTGTGGAGGTGCTG
AAAGCCTGGGAGCAAGCGTACGGATTTTTGGCCGCCGTCTTCGTCCAGAC
AGAGGACGGACTCCGGTCCAGCAATGCCCGGAAGCGGCACGGGTGGACGG
GGTGGAAAACCATGCGGGTGGCACGGAAGGTGATGGAATCGGAGGATGTG
GCTTCCTTCTACCTGAGCAATGTGCAGGTCGGGGAGCCCGTGTGCGCCTA
CCTACCGGGCCAGTACATCTCCCTCCGCCTGACCCTGCCCGACGGGGAGG
TCGAAGAGCGAGACTACAGTCTGAGCGAGTTTGCTGTACCCGCGTCCGCG
CATGCCTTGGAGCCGGGCGGGAAAGCGCGATCGGCCGAGGAGGAGGGAGG
GAAGAAGGAGTGTAAGGGGGAAGGCCGGGGAGAGGATGGGAAGGAGGAAG
GGGATTGCCCCCCCTATTTCCGCATCAGCATCAAGCGTCTCCCGGGGGGT
GCCGTATCCACCTACATGCACGACAAGGTGGAGGAGGGAAGCGAGATTCT
GGTCGGGCCACCCTACGGCGACTTTGTCCTCGCCCCTCCCTGTACCCCTT
CCTCCTCCCCCTCCTCGCATCCACGGCCCCTGGTCCTCCTCTCAGCCGGG
ATTGGCATCACTCCCCTGCTTTGCATGGCCGAAGCCGCGTTGCTCGGCAC
GCCGTCGCAAGAGAGCAAGGAGCATCGACCCTCTTTCCCTAAGTCTTCTT
CCTCCACACGGCCAGGGACGCGGCCCATTTCCCCTTTGCGGCCCGTCTTG
CGAGCCTTGCGGCCACACATCCCACCCGCTTTGCCTGCCACGTGTCCTTC
ACACAAGGAGCCGTAG

Synonyms

Publications