rna5817, rna5817 (mRNA) Nannochloropsis gaditana

Overview
Namerna5817
Unique Namerna5817
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length520
Alignment locationCM002466.1:914696..915627 +

Link to JBrowse

Properties
Property NameValue
Productinsulin degrading enzyme
Orig transcript idgnl|cribi|Naga_101325g1.7215.mrna
Orig protein idgnl|cribi|Naga_101325g1.7215
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:914696..915627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101325g1gene5617Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5817rna5817-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24870.1cds5802Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5817 ID=rna5817|Name=rna5817|organism=Nannochloropsis gaditana|type=mRNA|length=520bp
AGACGTCCCCTTCACCAGCGCCGAGCTGGGGCACTGGATGACCATCGTGC
CCGTCATGGACTTGCGCCTCCTGCAGCTCTTTTGGCCCCTGCCCCCCCAA
CGCGCCCGGTACGCCTCGGCGCCCACCCGCTACCTCTCCCACCTGCTCGG
GCACGAGGGCGCGGGCTCCGTCTTGTCCTACTTGAAAGCCAAACAGTGGG
CGAACGAACTCTCTGCGGGGGGGCAGTTCGATCAACGGGAATGGGCCTCC
CTGGACATATCCATTGACCTCACGGACGAAGGGGTAGCGCACGCGCGGGA
GGTGGTGGAAGTCGTCTATGCGTACTTGCGTTTGCTGCGGGAGGCGGGGC
CGCAGCGGTACGTGTGGGAAGAGATGGAGCAGACGGCGGCGAACAGCTTC
CGTTTCCTCTCGAAACAGCAGCCAATGTCCTACACGAGTGCCCTGTCCCA
CCGCATGCACAAGTATCCGCCCCAACACTTCATATCCGGGGCTGGCACCA
TCTTGCTCCGTTTTGCCTGA
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protein sequence of rna5817

>rna5817-protein ID=rna5817-protein|Name=rna5817|organism=Nannochloropsis gaditana|type=polypeptide|length=135bp
HILSLSFLIQTVKDPSIALAAIDAFLDYARTYLRGMSAEDYAANVSALVD
AKLEKPKNYAEQGNRYWNEIGKGAYLFDRAEREAAEAKTISKEELIEFLG
ACVGRREGGGRAGGRAGGSWWWSSTVRATRFPPWR
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mRNA from alignment at CM002466.1:914696..915627+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5817 ID=rna5817|Name=rna5817|organism=Nannochloropsis gaditana|type=mRNA|length=932bp|location=Sequence derived from alignment at CM002466.1:914696..915627+ (Nannochloropsis gaditana)
cacatcctctccctctccttcctcattcaGACTGTGAAGGACCCGTCCAT
CGCCCTGGCTGCCATCGACGCTTTCTTAGACTATGCACGCACGTACCTGC
GTGGGATGTCTGCGGAAGATTATGCTGCCAACGTCTCGGCCTTGGTGGAC
GCGAAGTTGGAGAAGCCCAAAAATTACGCCGAGCAGGGGAACCGGTATTG
GAACGAGATTGGTAAGGGCGCATATTTATTCGATCGGGCCGAGcgggaag
cggcggaggcaaAGACCATCTCCAAAGAGGAACTCATTGAATTTTTGGGC
GCCTGTgtagggagaagggagggcggggggagggcgggggggagggcggg
cggaagcTGGTGGTGGTCATCCACGGTTCGAGCCACCCGGTTCCCCCcat
ggaggtgaaggaggcaggggacggcgggagctggtgggggggagaagagg
aagaggaaggagaaggcggtcGGGCcaatggaggggggaaagggaagcgg
tTGGTGAAAGTGAGGGACCCAGGATTATTCCGGCGCGGGCATGCGCTCTA
CCCCTTACGGCCTCAGATCGCTGTCAAATCGGTCGGCGTGGCGGAAGCGT
GCTCCTCGTCGGCGACCGCCTAGGTTATGGGGAAGGAGCACacaggcggg
gcgggaggaggagcgagactgccctgggggggggtggacggcagattgga
aggggagagacaAGGGTCACGTGGGGTGAGATTcacgagggaagggagcc
gAGAGGCCATCGGCGTAGGGTAGGtaagaggcaggaggaagggtctGGGT
CAGGTGACAGGAGCTCGGGCAGCCATGCACTGGCGCCGTGAATAAATTTC
AAGTCAAAATTCAAATTGAGTCTCGcaaatggagaaagggggttGAAAAT
AATCATGGTCACCATGAAAGGTGCAGACGCAT
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Coding sequence (CDS) from alignment at CM002466.1:914696..915627+

>rna5817 ID=rna5817|Name=rna5817|organism=Nannochloropsis gaditana|type=CDS|length=408bp|location=Sequence derived from alignment at CM002466.1:914696..915627+ (Nannochloropsis gaditana)
cacatcctctccctctccttcctcattcaGACTGTGAAGGACCCGTCCAT
CGCCCTGGCTGCCATCGACGCTTTCTTAGACTATGCACGCACGTACCTGC
GTGGGATGTCTGCGGAAGATTATGCTGCCAACGTCTCGGCCTTGGTGGAC
GCGAAGTTGGAGAAGCCCAAAAATTACGCCGAGCAGGGGAACCGGTATTG
GAACGAGATTGGTAAGGGCGCATATTTATTCGATCGGGCCGAGcgggaag
cggcggaggcaaAGACCATCTCCAAAGAGGAACTCATTGAATTTTTGGGC
GCCTGTgtagggagaagggagggcggggggagggcgggggggagggcggg
cggaagcTGGTGGTGGTCATCCACGGTTCGAGCCACCCGGTTCCCCCcat
ggaggtga
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Synonyms
Publications