rna5815, rna5815 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5815
Unique Name	rna5815
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1614
Alignment location	CM002466.1:911866..913466 +

Link to JBrowse

Properties


Property Name	Value
Product	insulin-degrading enzyme
Orig transcript id	gnl\|cribi\|Naga_101100g2.7017.mrna
Orig protein id	gnl\|cribi\|Naga_101100g2.7017
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:911866..913466 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101100g2	gene5615	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5815	rna5815-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24874.1	cds5800	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:911866..913466+
coding sequence from alignment at CM002466.1:911866..913466+

mRNA sequence

>rna5815 ID=rna5815|Name=rna5815|organism=Nannochloropsis gaditana|type=mRNA|length=1614bp
TCTCCCTTCATCCTCGAAAGGAATGAGATAACCCGTCCTGACAGCTACTT
AGCCATGCCAACATTCATCATTCGCGACAACCGTCCCCTCGATCAGCTCG
AGGACTACATCTCACGTCCTACTTGCCAAGACCCCTCCTACACTTCGGGC
CGCCGAAATAATGACGCACTATCGCCCACAAGACTTGCTTTCCTGCTCAG
CGAGAGGGGATGAACCTGACTTGTACACTCCCCTTTTTTTGGACATTTTC
GACCGCCTCGTTGTTCGTTTCCCCACCTTTGCACGCACAGGATGAGGAGT
ACACGTGTCAAATGCCGTCCTGCGTGGCTGGTGTGGTCGGTGATGGGTTT
TATTCTCCTAGTTGTCGTCTTGCTGCCCCCATATAGCCAGGCGGCATTCG
GCCTCACCTCCCGCCGGCCCCCCCCTCTAGCGCCTCCTCCTCTACCTTCT
GCACCACCCACCTCTATGGGTGTGCCTTTGGCACGCAATGATCCTTCCTC
GCAAAAATGGGATGCCGAAAATGACGACGCAAGTCCTCCACAACCGTCTC
TCTTGGAGGAGATCCTACGACGCCTCCGCGGAGATTTCTCCCATCCGTTG
ACGGAATCGACCCGTCTGGTGGTGCATTACGACTGTCGTGACTATCGCTC
AGGCCTTCGGGGCTTAGGGTTGCGGCACGTGTGGCGCGACGTGGGCCTGA
GTCTGTTGAGCGATGAGGACACGGCCACTGACGCGGCGTTGCCCATGAGC
CTGGGACCGGCGCTGGGAGAACAAGGTTGGCGCACCTGGTGTTTCCCTTG
GGAAATCAGAGGAGGCGTGTCGGTCAAACGGATCCAAGGCGTGAGCGTCC
CACAATTCTGGCGGATGCGCCGGGTAAGGGGGGCGGGCGTGCACGGAAGG
AAGCGTGCGTGTCGGACCCCCCTCTGTCTAAGCTCCCGGCCCTCCCTGTC
TGCGTGCGCTCTGTCTGCACCCCGTCCTCTGGGCTTTTCGTGGGCCTTCG
TCGTCTATGTGTGGACCCGATCTCAACGACCCATGTTCCCGCTAACACTA
CCCCTCCGTCCCTCCCTCCCTCCCTGCCTCCCACCCTCCCTTCCTCCCCC
TCCAGCTGGACCGTCTACTATGGGCCAGTCTCCACTTGACATCGCTCCCC
ACCTCCACTTCCCTGGGCGCCGCTTTCGACGGGGCTTCGCAGCACATGCG
CTTCGAAGCCTCCCACGCCACACGCCTGCGCCTGCCCTTTCTAGACGAAG
ACAGCCCCTGGAGCTTCCTGCATGAGTACCCCTTGCGGTTCACCCTCAGT
CCCTTGCTCGCGGCCCGACATATCGACCTGAGCACGGCCATCCCCCGTCG
CCCTGCCTTCCGGCCCTCCATAGATCTGCTCTCTCTCGGCCTTGGCTGTG
AATGGGTGGAACCAGTGTTGGGAAGGAGGGAGGGAAGGAGGGAGGGAAGG
AGGGAGAGAGAGGAAGGACGGGGAGAGCGAGGTGCGGCCGCTATCCGGGT
CGGAATCTCCGCCAAATCTTTCGGGTAAGAGAAGGATCGAGGCGGTACGC
TCGACCAGAACCTTTGGTAGAAATGCGACATTGACATCGCTTTCCCCATT
TGCGCCCTCCCTCC

protein sequence of rna5815

>rna5815-protein ID=rna5815-protein|Name=rna5815|organism=Nannochloropsis gaditana|type=polypeptide|length=216bp
MGKDLGRIEQSPADDRTYRALELENGLQVLLIHDPTTDKASAAMSVGVGS
LHDGDVEGLAHFCEHMLFLGTEKYPDEQAYSKYLNQNGGHSNAYTDMDHT
CYFFSVLPGFLEGALDRFAQFFISPLFTDSATAREMQAVDSENNKNLQND
AWRLHQIHCASAKPGHPLGRFRCGSLRHSWRIPRPGVWTFATACSAFMPP
TTAATSAGSWCSGENP

mRNA from alignment at CM002466.1:911866..913466+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5815 ID=rna5815|Name=rna5815|organism=Nannochloropsis gaditana|type=mRNA|length=1601bp|location=Sequence derived from alignment at CM002466.1:911866..913466+ (Nannochloropsis gaditana)
ATGGGGAAAGATCTAGGTCGGATAGAGCAGAGTCCAGCCGATGACCGGAC
CTACCGCGCATTGGAGCTCGAAAATGGATTGCAGGTAAATATGACGACAT
ATCAAAGCCTTGGGGGTCGTGGATGATGGACGGTGGCAGTGGGTCGCTTT
TGTGCACATATTTGGAATCGTCGGCATGGCCGTGGTGGGGATAAGGGGGG
GACATGGCTGTTGTCTGTatgtcctctcctcttggcTTATTTGCCGCTTG
CTCAATGGGAACCTTTTCCGTCTTGTACCTACGTGCACATGTTGTACCTC
TCTTTGTCGCCTTCATGTTGCCGAGCAATCTCTGCATCCTTTTCGACCGT
GACTTCACTTCCTTTGCATCCCGCTTCTTCAGGTGCTTCTCATCCACGAC
CCGACCACGGACAAGGCTTCTGCGGCCATGAGCGTTGGTGTAGGCAGTCT
GCACGATGGTGATGTGGAAGGTTTGGCTCATTTTTGTGAGCATATGCTCT
TCTTGGGCACAGAAAAATACCCGGATGAACAGGCCTATTCTAAGTACCTC
AAcgtacgaggaggaagaggaagaggggaagggagcgggcgggagggctt
CAAAGTGATATCTAACAGAAAGGTCACGTGTCTCGCTGCGTGCGAAGTTC
TGACcgacttttttttttttaaacaTCTCCGGACAGCAAAACGGCGGGCA
TTCGAATGCCTACACCGACATGGACCACACTTGTtacttcttctccgtcc
tcccggGGTTCTTGGAAGGTAAGAACCCGCTCATGCCACGCACAAGGCCC
TGGTAGTGACTCGTCTCCGCTCCCAGGGACGGGTTAGGGTCCTGTCTGAC
GCCTTCGTAGACACGGAGGGTGATGGTGCTGGCCCTCGGCACAGGCGAAG
GACGAATGCCAATGACGTGTGCCACACCCTCCAAAACCTTGTTAGTGTCA
TGCATTCGCACCATTGATCAcccatcgtcgtcctcgcgACGGGTCtttgc
ctcccgcctccccccacctcggcccatgccctccctttcctccccgtccc
tcccccaggcgccTTGGATcgtttcgcgcaatttttcatctcccccctct
tcacGGACAGCGCCACGGCGCGCGAAATGCAGGCAGTGGACTCCGAAAAC
AATAAAAACCTCCAGAACGACGCGTGGCGCCTGCACCAGATCCATTGTGC
AAGCGCCAAGCCCGGTCATCCTCTCGGGCGTTTTCGGTGCGGCAGCCTGA
GACACTCTTGGGTAGGTCcctggcgaggaggaaggaagggagggagggag
ggagggagggagggagcgagggtggAAAGGCGATGATGTGGGTGGGAGTT
CTCTGTCGAGAATCTGTGTACGTCCACAGCCAGGCAGctgctcttttttc
cctttttcccagTCCCATCGTCACGTTCTatccccccccacgcctccgcc
tcccgtcgtctccccccccttttcttcctcttcccctcagAGGATCCCCA
GGCCCGGGGTGTGGACGTTCGCGACTGCCTGCTCCGCTTTCATGCCTCCT
ACTACAGCAGCAACATCTGCCGGCTCGTGGTGCTCGGGCGAGAACCCCTA
G

Coding sequence (CDS) from alignment at CM002466.1:911866..913466+

>rna5815 ID=rna5815|Name=rna5815|organism=Nannochloropsis gaditana|type=CDS|length=3255bp|location=Sequence derived from alignment at CM002466.1:911866..913466+ (Nannochloropsis gaditana)
ATGGGGAAAGATCTAGGTCGGATAGAGCAGAGTCCAGCCGATGACCGGAC
CTACCGCGCATTGGAGCTCGAAAATGGATTGCAGGTGCTTCTCATCCACG
ACCCGACCACGGACAAGGCTTCTGCGGCCATGAGCGTTGGTGTAGGCAGT
CTGCACGATGGTGATGTGGAAGGTTTGGCTCATTTTTGTGAGCATATGCT
CTTCTTGGGCACAGAAAAATACCCGGATGAACAGGCCTATTCTAAGTACC
TCAAcCAAAACGGCGGGCATTCGAATGCCTACACCGACATGGACCACACT
TGTtacttcttctccgtcctcccggGGTTCTTGGAAGgcgccTTGGATcg
tttcgcgcaatttttcatctcccccctcttcacGGACAGCGCCACGGCGC
GCGAAATGCAGGCAGTGGACTCCGAAAACAATAAAAACCTCCAGAACGAC
GCGTGGCGCCTGCACCAGATCCATTGTGCAAGCGCCAAGCCCGGTCATCC
TCTCGGGCGTTTTCGGTGCGGCAGCCTGAGACACTCTTGGAGGATCCCCA
GGCCCGGGGTGTGGACGTTCGCGACTGCCTGCTCCGCTTTCATGCCTCCT
ACTACAGCAGCAACATCTGCCGGCTCGTGGTGCTCGGGCGAGAACCCCTA
GATGGGGAAAGATCTAGGTCGGATAGAGCAGAGTCCAGCCGATGACCGGA
CCTACCGCGCATTGGAGCTCGAAAATGGATTGCAGGTGCTTCTCATCCAC
GACCCGACCACGGACAAGGCTTCTGCGGCCATGAGCGTTGGTGTAGGCAG
TCTGCACGATGGTGATGTGGAAGGTTTGGCTCATTTTTGTGAGCATATGC
TCTTCTTGGGCACAGAAAAATACCCGGATGAACAGGCCTATTCTAAGTAC
CTCAAcCAAAACGGCGGGCATTCGAATGCCTACACCGACATGGACCACAC
TTGTtacttcttctccgtcctcccggGGTTCTTGGAAGgcgccTTGGATc
gtttcgcgcaatttttcatctcccccctcttcacGGACAGCGCCACGGCG
CGCGAAATGCAGGCAGTGGACTCCGAAAACAATAAAAACCTCCAGAACGA
CGCGTGGCGCCTGCACCAGATCCATTGTGCAAGCGCCAAGCCCGGTCATC
CTCTCGGGCGTTTTCGGTGCGGCAGCCTGAGACACTCTTGGAGGATCCCC
AGGCCCGGGGTGTGGACGTTCGCGACTGCCTGCTCCGCTTTCATGCCTCC
TACTACAGCAGCAACATCTGCCGGCTCGTGGTGCTCGGGCGAGAACCCCT
AGATGGGGAAAGATCTAGGTCGGATAGAGCAGAGTCCAGCCGATGACCGG
ACCTACCGCGCATTGGAGCTCGAAAATGGATTGCAGGTGCTTCTCATCCA
CGACCCGACCACGGACAAGGCTTCTGCGGCCATGAGCGTTGGTGTAGGCA
GTCTGCACGATGGTGATGTGGAAGGTTTGGCTCATTTTTGTGAGCATATG
CTCTTCTTGGGCACAGAAAAATACCCGGATGAACAGGCCTATTCTAAGTA
CCTCAAcCAAAACGGCGGGCATTCGAATGCCTACACCGACATGGACCACA
CTTGTtacttcttctccgtcctcccggGGTTCTTGGAAGgcgccTTGGAT
cgtttcgcgcaatttttcatctcccccctcttcacGGACAGCGCCACGGC
GCGCGAAATGCAGGCAGTGGACTCCGAAAACAATAAAAACCTCCAGAACG
ACGCGTGGCGCCTGCACCAGATCCATTGTGCAAGCGCCAAGCCCGGTCAT
CCTCTCGGGCGTTTTCGGTGCGGCAGCCTGAGACACTCTTGGAGGATCCC
CAGGCCCGGGGTGTGGACGTTCGCGACTGCCTGCTCCGCTTTCATGCCTC
CTACTACAGCAGCAACATCTGCCGGCTCGTGGTGCTCGGGCGAGAACCCC
TAGATGGGGAAAGATCTAGGTCGGATAGAGCAGAGTCCAGCCGATGACCG
GACCTACCGCGCATTGGAGCTCGAAAATGGATTGCAGGTGCTTCTCATCC
ACGACCCGACCACGGACAAGGCTTCTGCGGCCATGAGCGTTGGTGTAGGC
AGTCTGCACGATGGTGATGTGGAAGGTTTGGCTCATTTTTGTGAGCATAT
GCTCTTCTTGGGCACAGAAAAATACCCGGATGAACAGGCCTATTCTAAGT
ACCTCAAcCAAAACGGCGGGCATTCGAATGCCTACACCGACATGGACCAC
ACTTGTtacttcttctccgtcctcccggGGTTCTTGGAAGgcgccTTGGA
TcgtttcgcgcaatttttcatctcccccctcttcacGGACAGCGCCACGG
CGCGCGAAATGCAGGCAGTGGACTCCGAAAACAATAAAAACCTCCAGAAC
GACGCGTGGCGCCTGCACCAGATCCATTGTGCAAGCGCCAAGCCCGGTCA
TCCTCTCGGGCGTTTTCGGTGCGGCAGCCTGAGACACTCTTGGAGGATCC
CCAGGCCCGGGGTGTGGACGTTCGCGACTGCCTGCTCCGCTTTCATGCCT
CCTACTACAGCAGCAACATCTGCCGGCTCGTGGTGCTCGGGCGAGAACCC
CTAGATGGGGAAAGATCTAGGTCGGATAGAGCAGAGTCCAGCCGATGACC
GGACCTACCGCGCATTGGAGCTCGAAAATGGATTGCAGGTGCTTCTCATC
CACGACCCGACCACGGACAAGGCTTCTGCGGCCATGAGCGTTGGTGTAGG
CAGTCTGCACGATGGTGATGTGGAAGGTTTGGCTCATTTTTGTGAGCATA
TGCTCTTCTTGGGCACAGAAAAATACCCGGATGAACAGGCCTATTCTAAG
TACCTCAAcCAAAACGGCGGGCATTCGAATGCCTACACCGACATGGACCA
CACTTGTtacttcttctccgtcctcccggGGTTCTTGGAAGgcgccTTGG
ATcgtttcgcgcaatttttcatctcccccctcttcacGGACAGCGCCACG
GCGCGCGAAATGCAGGCAGTGGACTCCGAAAACAATAAAAACCTCCAGAA
CGACGCGTGGCGCCTGCACCAGATCCATTGTGCAAGCGCCAAGCCCGGTC
ATCCTCTCGGGCGTTTTCGGTGCGGCAGCCTGAGACACTCTTGGAGGATC
CCCAGGCCCGGGGTGTGGACGTTCGCGACTGCCTGCTCCGCTTTCATGCC
TCCTACTACAGCAGCAACATCTGCCGGCTCGTGGTGCTCGGGCGAGAACC
CCTAG

Synonyms

Publications