rna5814, rna5814 (mRNA) Nannochloropsis gaditana

Overview
Namerna5814
Unique Namerna5814
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1728
Alignment locationCM002466.1:909934..911703 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101100g1.7016.mrna
Orig protein idgnl|cribi|Naga_101100g1.7016
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:909934..911703 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101100g1gene5614Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24873.1cds5799Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5814rna5814-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5814 ID=rna5814|Name=rna5814|organism=Nannochloropsis gaditana|type=mRNA|length=1728bp
ATGCCATCCACAGCGACACATAGCAGGCCCAGATTCGACAAGAAAGTAGC
GACGAGAACGACGGAAGCCACATCGACTTCTTTGAGCACAGAAGGTATGG
CAGTAACCGTTCCACAGGCAGAAGCGGCGGCACCGCCGACAGCATCTGAC
ATGGAAATTGTCAGTGCGAGTGAAACGGGATCAAAGCCATCGCGTGGGGC
AGCCACGACCGCAGGGACGCCGATCGGCGACACCATCTCGGTCACGACGG
CGCGTGCCCAATCCACCGATCCAGGAGTCGATAGCGACGCGATCATGTCG
GGGCAAAACGTGCTCGGACCCCCGCCACGGATGGCCACAGATCTCGGCCT
TGCCGAGGCCGCTCGGACGCAGGATGATGGAAGACGCCCTCGACAGGAGC
ATCCGCCGGACGTGAATGCCACGAAAAAGGCGCGAAAACGGACAGCGATA
TTGGCGCGTCAGTTGGAAGAGGCGCGGGCGGAGCGGATGGCAGAAGTCGA
GCGTTTGCACGCCTACTACCGGGGGCGGACCTTCCACGTCCCCGCAGGGC
GGGAGGGAGGGCGGGAGGGAGGGCGGGAGGGAGGGGAGTACGAAGTCCTC
ATGGTCTACTCGGATGTCGCCCTTGCCGACGGTCCCCATGCGCTTGTCAA
GCACAAAGCCTCGGGTAACGTGTGCTGTCGCCCCCCCGTCTCCGTCCATC
GTTATCTGGCACATTTTTTTCCCCGCCCCCCCCTTCCCCTTCGGCCTTCC
CCGCCTGCCCGCTCCCCCGCCCTTGCCGCCCCCCACCCGCCTAGGCTTCC
GAGAACGGTGGCGACCAAGCCTGCAAAGAACCGGACCACCGCTGTGGTAA
GCGTAGACCATCCAAACCAACCTCGGCCTTTTTCCTTCCCTCCCCTCAAC
GCCGGAGACCTCTTGCTCCCTGAGCGTCCCCTTGCGACGTCCAAGCAGGT
GAGGAAGCCTTCGGTCACCCAGGCGGATTATGCCCTACCACCCCGACCAG
GGGGCTCACGAGTGGGCTATGCTGGCGACACTTCCAAGGATGCGGCGGCC
GTGGCGTGGCCGGCAAATGGGGCTGCACAGAAGGGAAAGGGGGCTCCGGC
GTCCGTCCCGGAGAGGAGGGAAGCGGAGCATGCCTTTATCAACCCTTCCT
TGTCCTCGAGTCGGATGGCACCTGCCCTACAGCCACGAAGAACTAGCACC
CACACTGCTCTTCCCAGCGCGGCAGTGCTAGAACCCATCTCCCAAAGCTT
TCTTCGAAAACTACCCGGACCTGACCCTCCCCTATCCCCTCCTGGACGCT
CCCCCGCCCTGACTCCCCCCCTTCCTCCCTCCCTCCCTCCCCCTCTTGCT
CCTTCGCCTTCCCCGTCGCCTTCCACACCCCTGGGCCCGCTTTACCAGAC
GGTATCCTCCTTCTTGTCAGCGCCCTCGCCCCAGCCCACGCCCCTCGTCC
TGGACCCCTGTGCAAATCTCGATATCGGAGAAAACAGCCGCGACCGCAGC
GAGCGCTGCCCCAAGGGAAGGGATGACAATTGTGTCAGCTCCAGTCTTCT
CGGCGAGAAGAGGAGGAGAGGGATGGGGGAAAGAAGGGAACGGCGAAGGA
AGGGAGATAGGCGAAGGGGAGCTCTACAACATCCAGCACCGAGGACACAG
GTTTTAATATTGCTGTCTTCATTAGGCCGTAGTAGCGTGAACATCGAAGC
TGATGGCGCGGAAAAAGTTCGACATTGA
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protein sequence of rna5814

>rna5814-protein ID=rna5814-protein|Name=rna5814|organism=Nannochloropsis gaditana|type=polypeptide|length=327bp
MRSTRVKCRPAWLVWSVMGFILLVVVLLPPYSQAAFGLTSRRPPPLAPPP
LPSAPPTSMGVPLARNDPSSQKWDAENDDASPPQPSLLEEILRRLRGDFS
HPLTESTRLVVHYDCRDYRSGLRGLGLRHVWRDVGLSLLSDEDTATDAAL
PMSLGPALGEQGWRTWCFPWEIRGGVSVKRIQGVSVPQFWRMRRVRGAGV
HGRKRACRTPLCLSSRPSLSACALSAPRPLGFSWAFVVYVWTRSQRPMFP
LTLPLRPSLPPCLPPSLPPPPAGPSTMGQSPLDIAPHLHFPGRRFRRGFA
AHALRSLPRHTPAPALSRRRQPLELPA
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mRNA from alignment at CM002466.1:909934..911703-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5814 ID=rna5814|Name=rna5814|organism=Nannochloropsis gaditana|type=mRNA|length=1770bp|location=Sequence derived from alignment at CM002466.1:909934..911703- (Nannochloropsis gaditana)
TCTCCCTTCATCCTCGAAAGGAATGAGATAACCCGTCCTGACAGCTACTT
AGCCATGCCAACATTCATCATTCGCGACAACCGTCCCCTCGATCAGCTCG
AGGACTACATCTCACGTCCTACTTGCCAAGACCCCTCCTACACTTCGGGC
CGCCGAAATAATGACGCACTATCGCCCACAAGACTTGCTTTCCTGCTCAG
CGAGAGGGGATGAACCTGACTTGTACACTCCCCTTTTTTTGGACATTTTC
GACCGCCTCGTTGTTCGTTTCCCCACCTTTGCACGCACAGGATGAGGAGT
ACACGTGTCAAATGCCGTCCTGCGTGGCTGGTGTGGTCGGTGATGGGTTT
TATTCTCCTAGTTGTCGTCTTGCTGCCCCCATATAGCCAGGCGGCATTCG
GCCTCACCTCCCGCCGGCCCCCCCCTCTAGCGCCTCCTCCTCTACCTTCT
GCACCACCCACCTCTATGGGTGTGCCTTTGGCACGCAATGATCCTTCCTC
GCAAAAATGGGATGCCGAAAATGACGACGCAAGTCCTCCACAACCGTCTC
TCTTGGAGGAGATCCTACGACGCCTCCGCGGAGATTTCTCCCATCCGTTG
ACGGAATCGACCCGTCTGGTGGTGCATTACGACTGTCGTGACTATCGCTC
AGGCCTTCGGGGCTTAGGGTTGCGGCACGTGTGGCGCGACGTGGGCCTGA
GTCTGTTGAGCGATGAGGACACGGCCACTGACGCGGCGTTGCCCATGAGC
CTGGGACCGGCGCTGGGAGAACAAGGTTGGCGCACCTGGTGTTTCCCTTG
GGAAATCAGAGGAGGCGTGTCGGTCAAACGGATCCAAGGCGTGAGCGTCC
CACAATTCTGGCGGATGCGCCGGGTAAGGGGGGCGGGCGTGCACGGAAGG
AAGCGTGCGTGTCGGACCCCCCTCTGTCTAAGCTCCCGGCCCTCCCTGTC
TGCGTGCGCTCTGTCTGCACCCCGTCCTCTGGGCTTTTCGTGGGCCTTCG
TCGTCTATGTGTGGACCCGATCTCAACGACCCATGTTCCCGCTAACACTA
CCCCTCCGTCCCTCCCTCCCTCCCTGCCTCCCACCCTCCCTTCCTCCCCC
TCCAGCTGGACCGTCTACTATGGGCCAGTCTCCACTTGACATCGCTCCCC
ACCTCCACTTCCCTGGGCGCCGCTTTCGACGGGGCTTCGCAGCACATGCG
CTTCGAAGCCTCCCACGCCACACGCCTGCGCCTGCCCTTTCTAGACGAAG
ACAGCCCCTGGAGCTTCCTGCATGAGTACCCCTTGCGGTTCACCCTCAGT
CCCTTGCTCGCGGCCCGACATATCGACCTGAGGTGAGATGGACGACGGGA
GCGAAGATAAAGGTGGATGCAGAACGGCGGCGGGGTGCCTGTGGGGTGAC
CGCGTGTCTGGCGAACGCCTGAACCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCCTTCTTCCTTCCCTCCTTGTCTTCCACCTAGCACGGCCATCCC
CCGTCGCCCTGCCTTCCGGCCCTCCATAGATCTGCTCTCTCTCGGCCTTG
GCTGTGAATGGGTGGAACCAGTGTTGGGAAGGAGGGAGGGAAGGAGGGAG
GGAAGGAGGGAGAGAGAGGAAGGACGGGGAGAGCGAGGTGCGGCCGCTAT
CCGGGTCGGAATCTCCGCCAAATCTTTCGGGTAAGAGAAGGATCGAGGCG
GTACGCTCGACCAGAACCTTTGGTAGAAATGCGACATTGACATCGCTTTC
CCCATTTGCGCCCTCCCTCC
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Coding sequence (CDS) from alignment at CM002466.1:909934..911703-

>rna5814 ID=rna5814|Name=rna5814|organism=Nannochloropsis gaditana|type=CDS|length=984bp|location=Sequence derived from alignment at CM002466.1:909934..911703- (Nannochloropsis gaditana)
ATGAGGAGTACACGTGTCAAATGCCGTCCTGCGTGGCTGGTGTGGTCGGT
GATGGGTTTTATTCTCCTAGTTGTCGTCTTGCTGCCCCCATATAGCCAGG
CGGCATTCGGCCTCACCTCCCGCCGGCCCCCCCCTCTAGCGCCTCCTCCT
CTACCTTCTGCACCACCCACCTCTATGGGTGTGCCTTTGGCACGCAATGA
TCCTTCCTCGCAAAAATGGGATGCCGAAAATGACGACGCAAGTCCTCCAC
AACCGTCTCTCTTGGAGGAGATCCTACGACGCCTCCGCGGAGATTTCTCC
CATCCGTTGACGGAATCGACCCGTCTGGTGGTGCATTACGACTGTCGTGA
CTATCGCTCAGGCCTTCGGGGCTTAGGGTTGCGGCACGTGTGGCGCGACG
TGGGCCTGAGTCTGTTGAGCGATGAGGACACGGCCACTGACGCGGCGTTG
CCCATGAGCCTGGGACCGGCGCTGGGAGAACAAGGTTGGCGCACCTGGTG
TTTCCCTTGGGAAATCAGAGGAGGCGTGTCGGTCAAACGGATCCAAGGCG
TGAGCGTCCCACAATTCTGGCGGATGCGCCGGGTAAGGGGGGCGGGCGTG
CACGGAAGGAAGCGTGCGTGTCGGACCCCCCTCTGTCTAAGCTCCCGGCC
CTCCCTGTCTGCGTGCGCTCTGTCTGCACCCCGTCCTCTGGGCTTTTCGT
GGGCCTTCGTCGTCTATGTGTGGACCCGATCTCAACGACCCATGTTCCCG
CTAACACTACCCCTCCGTCCCTCCCTCCCTCCCTGCCTCCCACCCTCCCT
TCCTCCCCCTCCAGCTGGACCGTCTACTATGGGCCAGTCTCCACTTGACA
TCGCTCCCCACCTCCACTTCCCTGGGCGCCGCTTTCGACGGGGCTTCGCA
GCACATGCGCTTCGAAGCCTCCCACGCCACACGCCTGCGCCTGCCCTTTC
TAGACGAAGACAGCCCCTGGAGCTTCCTGCATGA
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Synonyms
Publications