rna5811, rna5811 (mRNA) Nannochloropsis gaditana

Overview
Namerna5811
Unique Namerna5811
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1625
Alignment locationCM002466.1:898321..899187 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100432g1.5740.mrna
Orig protein idgnl|cribi|Naga_100432g1.5740
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:898321..899187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100432g1gene5611Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5811rna5811-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24877.1cds5796Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5811 ID=rna5811|Name=rna5811|organism=Nannochloropsis gaditana|type=mRNA|length=1625bp
TCTTCGGAAGAAGACATCGTCCTCGCCTGAGGTGCAAAAGGGGAAAAATG
AATTTTGCTGCTGGCATCTACTACCAGGTTCAGGAGTTTGCAAAGCGATG
CAATAGCTTCTGAGCGATCGTCACAAATCCCCTGAAACCAGTACGTGCAT
CCCAATGTTGCATGCCGGAACATATTTCAATGCGTCACTCTGTGCCGGTT
GTCAACTATTCCCAGCATGCGCATGTCATGAATGGTGCGGTATTGAAACG
GAGTGCAAGTGTTGTCCCTGGGAGACCGGTCTTGGCGACGAGAGGTAGGC
ATGTCCGGCGCTGCTCCAAACTATGACTCAGCCCTCACACTGACTTCTCA
CGCCCAGGAAAAAGGCGGAAAGGACCAGCACGAGGTGGTAAAGTGCTGCT
ACAAGGACCTGCGGCGGCAAATTGTTTATTTTTTTCATGCCCGCGGTCTC
CTCTCGCGTGCGTGGCTTTTTTACCCTTCTGGCCGCGTTCCAGCTACTCG
GGATGCGCGCATTTGTCTTTCGATCCCAAGTGAGCACCAAATTGGTTTCA
AGATGTACACGTCACAGATGGATACCACAGGGGAGCACTGCGCGATTTAG
CACTGCTTCCGCCCCTTCCTCGTCGTCAGGCTCGGGCTCCACGGGCGCAA
AGAGTCAGCCCGAGTCCCCCAGACCCAGCATGGACGAGGCGCAGAAGACG
TTCAACAAGGTGTTCCCCGTGAATACTGCAGGAGCCGATTTGCGCCCTGT
CGTGCTCTTTGACGGTGTTTGCATGTTTTGCAACCGTGGCATTGACACTC
TACTGGCCCTGGATGTGAACAGGAAAATCCGCGTGGCCCCCCTACAAAGC
GAACTTGGCTGTGCGCTCATGACGGTGTGCGGCCGTGATCCGGATGACCT
TTCATCCATGCTGGTGGTGGAAGCCGATAAAAGCCTTTTCTCTAAATCTG
ATGCGGCGATTCGGATTGCCGAAGTGGCGGCGCCCCATCCCTTGCTGGGT
GGGGCGCTGGAAAGAGCTGCGCGCTTGCTTCTACCACAGGAGATGCGAGA
CGGGGCGTACGACACAGTAGCTGAGAACCGGTACAGCATATTGGGAAAGC
GGGAGGAATGTCGGCTGCCGGATCCAGGGGATGACCGCTTTATCGCCTAA
GAGACAGGCGCTGTACAGAAAGACCGATGCCGGGGCCCGTAAAGAGCCGC
ACAGGGATGGCTTGGAGTGCCTGACGCGAATGCCTTGGCGCGCAGGCATG
TCAGTGGGTGGATCGCACGGTCTTCCGAATCGCTGGCAGAGAGATCCCGG
CTTCAAATCACGATTTTCACGGTTGCCTACGGCTTGGACCGGAGACTTGG
ACAAAATGCATCTGCGTGGACGTGCATGGCGTAAAATCGGTGCGTTTGGT
GCTCTATTGGCACGCACGCTTCCTTACGAATTTAACAAATTACGAATTCA
AGCTGTCGTGCCCGTTATAAAGTGGCAGAAGGGATGGCGAAACCGTACGG
ACGACGCTTGCACTGCAAGGACGCGCTCCGGCGCCACCCTCAGATGCACC
ATGGCCACCCTTTTCATCGATGTTGACAGACAAGCAAAGAAAGAAGTCAT
AGCCATGCCAAAATTTGTTTTTTGT
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protein sequence of rna5811

>rna5811-protein ID=rna5811-protein|Name=rna5811|organism=Nannochloropsis gaditana|type=polypeptide|length=104bp
TGAAGDRTREWRSSIGASGLMGNSAPPGGWAVGREGGREGGREGGECVMP
CFDLKGEILCADRSFLLPFRISLPPSLPPSLLPSKAPGATPPRCRLSMSH
SRTW
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mRNA from alignment at CM002466.1:898321..899187+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5811 ID=rna5811|Name=rna5811|organism=Nannochloropsis gaditana|type=mRNA|length=867bp|location=Sequence derived from alignment at CM002466.1:898321..899187+ (Nannochloropsis gaditana)
ATACGGGCGCGGCGGGCGATCGAACGAGGGAATGGAGAAGCAGCATTGGC
GCCAGCGGCCTGATGGGAAACAGCGCACCCCCCGGGGGGTGggcggtagg
gagggagggagggagggagggagggagggagggaggagaatgtGTGATGC
CGTGTTTTGATTTGAAAGGGGAAATATTGTGCGCTGATCGCTCTTTTCTT
CTACCTTTCCGgatatccctccctccctccctccctccctctctccttcc
ttccaagGCCCCGGGCGCCACCCCACCGCGGTGCCGCCTCAGCATGTCTC
ATTCAAGGACCTGGTAGAGCTTTTCTGCGAGAAGAACGGCgtgctcttcc
ttcccaaGCCCGGGCGGACAGAGCAAGGGCGGCAGgtcggtggggaggga
ggaagggagggagggagggagggaaggagggagggagggaggaaggaggg
aagggggcaggCGGTGAATACAGGATGGGAGGCAGAGTATGAAAGGATGA
GGCGTTTCAGCGCGTGTTGCCTTGGCCGTTTTTCTCTTATCGATCAGGTG
TATTCCTTCGGCGGGCTCTCCGTCTACCTGGACAATGACGTGGTCTTCGC
CGACTTGAGCGGGGGCAACCGAcagcgggaggggcggggggaggacaaag
aggagggaggctttgCGCCCATTGCCTTGGAGAGTCTGTTGCAGCGGGTT
caaagaggcgggggaaagtGAAAggagggtcgaggagggggcaaggggga
ttGACGTGGCCGTataggagaaggaagtggtgCTGAGACGCGAGGATTAA
AGTGGCGCACGTCCTTAGGCTATGTAATGTATGTAGTCGAGAAAAAAAGA
TCAAAATGCTGCCCACG
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Coding sequence (CDS) from alignment at CM002466.1:898321..899187+

>rna5811 ID=rna5811|Name=rna5811|organism=Nannochloropsis gaditana|type=CDS|length=315bp|location=Sequence derived from alignment at CM002466.1:898321..899187+ (Nannochloropsis gaditana)
ACGGGCGCGGCGGGCGATCGAACGAGGGAATGGAGAAGCAGCATTGGCGC
CAGCGGCCTGATGGGAAACAGCGCACCCCCCGGGGGGTGggcggtaggga
gggagggagggagggagggagggagggagggaggagaatgtGTGATGCCG
TGTTTTGATTTGAAAGGGGAAATATTGTGCGCTGATCGCTCTTTTCTTCT
ACCTTTCCGgatatccctccctccctccctccctccctctctccttcctt
ccaagGCCCCGGGCGCCACCCCACCGCGGTGCCGCCTCAGCATGTCTCAT
TCAAGGACCTGGTAG
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Synonyms
Publications