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Properties
| Property Name | Value |
|---|
| Product | heavy metal translocating p-type atpase |
| Orig transcript id | gnl|cribi|Naga_100265g4.8304.mrna |
| Orig protein id | gnl|cribi|Naga_100265g4.8304 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:889974..893202 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5808 ID=rna5808|Name=rna5808|organism=Nannochloropsis gaditana|type=mRNA|length=1011bp
CGGCGACGCGTACATACGCAGCGGGAGGCTAAAATACTACGTTGAACACA
TTTGCAATGTTGACCACCGTGTGCGCAACATTTTGGCCGGCACAATTTGA
AAAACTGCATACTTAAGCCACATCTCACCGCGGTATTGTGAACAGAAATC
GAACGCAGGGGCTCCATCTCCTCCCATCTCACGGCCAACGGTCAACCCCC
CCCCTATCCCTATACCGTGTGTCGAGAGTCGACACCATTGCGCCCTCACG
AGAACTTTAAAATGGTGGGTTTGACGAAGAGGAAGGTGCAACTGGGTCGT
CGAGATTTTGAAGGGGGTGGGGGGACGGAGCGGAGCCTTGGGCAGAATAC
AGAAACCTTGCAGAAGCAGCTCTATAGACACTACAACGAGACAAGCCACC
TGAACGTGCAATGGCGTCACTCCCTCACGCGCATCTCCCTGGGCTTATCC
GCAATCTTGACGTATCGGATGTACCGTCAATGGGGAGATACATCGACGAC
AAATGCAAACACGTCGTCTTCCTGGCCCAGTTTCCTACAGATGCATGGCG
TTGAGTTTTTAGGCGTCATATCCGGGCTGGCCATAGCCCATTACATCCAT
TCGCCCCTCCCACTGACAGGAGGGTCCTATGTCCTTCCCTGGTCGTTTTA
TGCGGCTTTCCTCTGCGCGTGTTTAGAAATCTTTGCTTTCTACCGGCACG
TAGTCTCCAATCCAGAATACACTTTACACATAGACGCCACCTTGCCGGTG
GGTGCTTTGTTTTTCCTCTTTGTCTGGGGTGCTGACCTGATGATGGGCCG
CAGTCAACGGGAAGCGAGGCTGGGCTTGGAGGCTAGCCAGCGCCTGGGCG
AGACCGTCGCTCCTCATCGAATGAAAAGGGAATAAATATTATGGACGTGG
TAAAATGTGTGGGGTAACAGATCGGCATAGAAGAACAGGCACATTAAGTG
ATGCGCACAGCAATGTTCAAGGCAGATTAAGTAATGCGCACAGCGATGTT
CTTCCTTTGAG back to topprotein sequence of rna5808 >rna5808-protein ID=rna5808-protein|Name=rna5808|organism=Nannochloropsis gaditana|type=polypeptide|length=951bp
MNLTTFSFPVAFSIKTRAIRQPMSSHEKKETAKLLSLSPKKMSGYGSTPV
ASPRSLTPTPRSREEGEFFMALTKTTTTSRIRIANLCCSMETKLVKELLK
PLKGVLDVKVSEVGRIAIVRHTEAVSATLLLATLNAAHLGASLQDVHFNH
HDEDADDDEGNDRGGRSQRRLRACGGMVHPDAGPWTALLVAAVGWTVAML
SSHLHWRPLVQYVLVIPCVLVAFSPLALPLLRAAQHLRVDVNVLMSSAVI
GALCLGDLAEALGVLLLVLMADRVRCAALDYVAALLDSTSGRLMHAQVAH
VLSFAAEKDGGEPGKKGKDQGQDVGGKKRRGAEGGLPTTDVPVTEVRVGD
LVLVRAGEQAPVDGVVVHGEAAMDESALTGECMPVEKKAGARVAGGSICQ
AGALEISCTAPPSHSSLRVIQDMVHDIATSQAPSQEMLDRFAAVYTPLVL
FLSFGLALAPEVWAVLRGKPVAEVGWQQGLYRGLELLVLACPCALAMATP
LPFLTTLAASAARAGVLFKSATALETLSTVQVLACDKTGTLTEGRFMVSG
RLTLHRTAKHDPDVVRLLAASVESNVAHRLSAAVVLDALGCVTEAFYSNK
EDGQKPEGNPVPKKKLAKVSKLRHMEGVGVEGECVLEDYEESFLVTVGNR
ALLDDADLDDPEVQAFLERYQGEAHLFVLVDGVPEMALSLTDRVRAEAPA
MLRALADELQVETTLLTGDSEGVAKALQAKVGPDLLPTVLARLKPRDKLH
WIEERQRQPPPVKAAFSSLRRTSVSSYVTVSASATTAPYQRIDDVNTLDQ
LEGAARADKSDKRDHSGTRGKDGKQCIVAMLGDGVNDAPSLRAADVGLAM
GEHGMALAVQAADVVLLSDDLSRVPQAIRMSHFVRWIVVQNLFLALGLKI
FLMLVIFSGEGRLWEAVASDGLSLMAVIVNGLRPLYVAGKIFEDIEEEDV
V back to topmRNA from alignment at CM002466.1:889974..893202+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5808 ID=rna5808|Name=rna5808|organism=Nannochloropsis gaditana|type=mRNA|length=3229bp|location=Sequence derived from alignment at CM002466.1:889974..893202+ (Nannochloropsis gaditana)
CTCCCAAAAACAAGAAGACACATCTTACGCCTAACAAACCGATGGTAACC
AGCCAACCGACCATTTGTCAATGAGTGAGGGCAGCTTGAGGAAGTGGACT
GCGTGGTGGTGCTGCTTTGTGTGTGATTTTTAGGGGTGTGGCTGTTGCGC
CCATTGGCAGGGACCCGACCTCGGCAgcagcctcctctcccacgacCGCT
ATTTGGTTTGCGATGAATCTCACaacattttccttcccagtCGCGTTCTC
CATTAAGACCCGCGCCATCCGACAACCCATGTCGTCCcacgagaagaagg
agacggcaaAGTTGCTGTCGTTGTCGCCCAAAAAAATGTCCGGCTATGGC
AGTACGCCTGTGGCATCTCCACGCTCGCTCACTCCTACGCCTCGCTccag
agaggaaggtgagtTTTTCATGGCATTGACCAagaccaccaccaccagtc
GCATCCGTATTGCGAACCTTTGCTGTAGCATGGAAACAAAGCTGGTGAAG
GAGCTGCTGAAGCCGCTGAAAGGGGTGCTGGACGTGAAGGTGTCAGAAGT
CGGCCGCATTGCGATCGTCCGTCATACCGAGGCCGTCTCAGCCACGCTTC
TTCTCGCAACCCTGAACGCAGCGCACTTaggtgcctccctccaagacGTC
CACTTCAATCACCATGATGAGGATgcggacgacgacgaaggTAACgacag
gggcgggagaagccAGCGACGCTTGCGGGCTTGCGGTGGCATGGTCCACC
CTGACGCGGGCCCATGGACTGCCCTCCTCGTGGCCGCGGTGGGTTGGACG
GTCGCCATGCTCAGCTCCCACCTTCATTGGCGACCCCTCGTGCAATACGT
CCTGGTTATTCCTTGTGTGCTGGTGGCTTTCTCGCCCTTGGCGTTACCCC
TATTGCGGGCGGCGCAGCATCTCCGTGTGGACGTGAACGTCTTGATGAGC
TCCGCCGTTATCGGTGCCCTGTGCCTAGGAGACctggccgaggccctggG
AGTGCTGTTGCTGGTGCTGATGGCGGACAGGGTCAGGTGCGCTGCCCTCG
ATTATGTGGCAGCGCTCTTGGACTCGACCAGCGGACGCCTGATGCACGCG
CAAGTCGCCCATGTCCTGTCGTTCGCCGCCGAGAAAGACGGCGGAGAGcc
cgggaagaaagggaaagaccagggccaggacgtgggagggaaaaagcgcc
GCGGGGCCGAAGGTGGCTTGCCGACGACGGACGTGCCGGTGACGGAGGTC
CGGGTTGGGGACCTCGTCTTGGtacgggcgggggagcaagCCCCCGTGGA
CGGCGTGGTGGTgcacggggaggcggccatggacgAGTCGGCGTTGACGG
GGGAGTGCATGCCCGTagagaagaaggcaggggcccGGGTCGCGGGAGGA
AGCATTTGCCAGGCTGGGGCTCTGGAAATTTCCTGCacggcccccccctc
ccattccagcCTCCGGGTCATCCAGGACATGGTTCACGACATTGCCACCA
GCCAAGCTCCTTCCCAAGAAATGCTGGACCGATTCGCGGCCGTCTACACC
CCCTtggtcctcttcctttccttcggcTTGGCCCTGGCACCGGAGGTCTG
GGCTGTCCTACGGGGCAAGCCTGTGGCGGAAGTCGGGTGGCAGCAAGGTC
TTTACCGTGGCTTGGAGCTCTTGGTCCTTGCCTGTCCATGTGCCTTGGCC
ATggccacgcccctccctttcctgacTACCCTGGCGGCCTCCGCGGCGCG
CGCAGGGGTCTTGTTCAAAAGCGCCACCGCCTTGGAAACCTTGAGTACGG
TCCAAGTCCTGGCGTGCGACAAAACCGGTACCTTGACCGAAGGACGGTTC
ATGGTGAGCGGGCGTTTGACCCTGCACCGAACCGCAAAACACGACCCGGA
TGTAGTCCGCCTGTTGGCGGCCAGCGTGGAGAGCAACGTGGCCCATCGCT
TGTCGGCGGCGGTCGTTTTGGATGCCCTGGGGTGTGTCACGGAAGCCTTT
TATTCGAACAAAGAGGACGGGCAAAAGCCGGAGGGGAACCCGGTGCCGAA
AAAAAAACTGGCCAAAGTCTCCAAACTCCGCCacatggagggggtgggcg
tggagggcgaaTGCGTCCTGGAGGACTACGAGGAAAGCTTCTTGGTCACG
GTCGGAAACCGGGCATTGTTGGACGATGCGGATTTAGACGACCCGGAGGT
ACAAGCCTTCCTAGAGCGCTACCAGGGCGAAGCCCACTTGTTCGTTTTGG
TGGACGGCGTGCCCGAAATGGCCCTGAGTTTGACGGATCGAGTCCGGGCG
GAGGCGCCCGCCATGCTTCGGGCCTTGGCAGACGAGTTGCAGGTGGAAAC
CACCCTCTTGACCGGTGACTCGGAGGGGGTAGCCAAGGCGTTGCAAGCCA
AGGTGGGCCCTGACCTTCTCCCGACGGTGCTGGCGCGCCTGAAACCGAGG
GACAAACTGCACTGGATCGAGGAGCGGCAACGCCAGCCCCCGCCAGTGAA
GGCAGCCTTCTCGTCGTTGCGCCGTACCTCTGTCTCCAGCTACGTGACCG
TATCGGCCTCGGCCACCACGGCGCCTTACCAGCGGATAGACGATGTCAAC
ACCTTGGATCAATTGGAGGGGGCAGCACGAGCGGATAAGTCGGACAAGCG
GGATCACTCGGGCACacggggaaaagatgggaaGCAGTGCATCGTGGCCA
TGCTGGGAGACGGTGTAAACgacgcgccctccctccgcgcggCCGACGTC
GGACTGGCCATGGGAGAGCATGGCATGGCTCTGGCTGTCCAAGCCGCCGA
TGTGGTGCTGTTGTCGGACGACCTGTCGCGGGTTCCGCAGGCCATTCGTA
TGTCGCATTTTGTGCGGTGGATTGTTGTGCAGAATCTGTTCCTGGCGCTT
GGTTTGAAAATCTTTTTGATGCTTGTGATATTTTCCGGGGAAGGGCGGTT
GTGGGAAGCAGTTGCAAGCGACGGGTTAAGTTTAATGGCGGTGATTGTTA
ATGGCCTGCGGCCGTTGTACGTAGCAGGGAAAATTTTTGAGGACatagaa
gaagaagatgtcGTGTAAATTTAAACAATTTGGAGTATGTCGCGTAGGTA
CATGCCAGAttgcgggaaaggaagaaagtcACCTTTGTATGTAGTTATTT
TCGTTTTAGTTCGACTCTCGTGAGTGGGATAAAGACATGGCATGCGCACG
CCTCATGCGAAGCATAAAAAGTATATATT back to topCoding sequence (CDS) from alignment at CM002466.1:889974..893202+ >rna5808 ID=rna5808|Name=rna5808|organism=Nannochloropsis gaditana|type=CDS|length=2856bp|location=Sequence derived from alignment at CM002466.1:889974..893202+ (Nannochloropsis gaditana)
ATGAATCTCACaacattttccttcccagtCGCGTTCTCCATTAAGACCCG
CGCCATCCGACAACCCATGTCGTCCcacgagaagaaggagacggcaaAGT
TGCTGTCGTTGTCGCCCAAAAAAATGTCCGGCTATGGCAGTACGCCTGTG
GCATCTCCACGCTCGCTCACTCCTACGCCTCGCTccagagaggaaggtga
gtTTTTCATGGCATTGACCAagaccaccaccaccagtcGCATCCGTATTG
CGAACCTTTGCTGTAGCATGGAAACAAAGCTGGTGAAGGAGCTGCTGAAG
CCGCTGAAAGGGGTGCTGGACGTGAAGGTGTCAGAAGTCGGCCGCATTGC
GATCGTCCGTCATACCGAGGCCGTCTCAGCCACGCTTCTTCTCGCAACCC
TGAACGCAGCGCACTTaggtgcctccctccaagacGTCCACTTCAATCAC
CATGATGAGGATgcggacgacgacgaaggTAACgacaggggcgggagaag
ccAGCGACGCTTGCGGGCTTGCGGTGGCATGGTCCACCCTGACGCGGGCC
CATGGACTGCCCTCCTCGTGGCCGCGGTGGGTTGGACGGTCGCCATGCTC
AGCTCCCACCTTCATTGGCGACCCCTCGTGCAATACGTCCTGGTTATTCC
TTGTGTGCTGGTGGCTTTCTCGCCCTTGGCGTTACCCCTATTGCGGGCGG
CGCAGCATCTCCGTGTGGACGTGAACGTCTTGATGAGCTCCGCCGTTATC
GGTGCCCTGTGCCTAGGAGACctggccgaggccctggGAGTGCTGTTGCT
GGTGCTGATGGCGGACAGGGTCAGGTGCGCTGCCCTCGATTATGTGGCAG
CGCTCTTGGACTCGACCAGCGGACGCCTGATGCACGCGCAAGTCGCCCAT
GTCCTGTCGTTCGCCGCCGAGAAAGACGGCGGAGAGcccgggaagaaagg
gaaagaccagggccaggacgtgggagggaaaaagcgccGCGGGGCCGAAG
GTGGCTTGCCGACGACGGACGTGCCGGTGACGGAGGTCCGGGTTGGGGAC
CTCGTCTTGGtacgggcgggggagcaagCCCCCGTGGACGGCGTGGTGGT
gcacggggaggcggccatggacgAGTCGGCGTTGACGGGGGAGTGCATGC
CCGTagagaagaaggcaggggcccGGGTCGCGGGAGGAAGCATTTGCCAG
GCTGGGGCTCTGGAAATTTCCTGCacggcccccccctcccattccagcCT
CCGGGTCATCCAGGACATGGTTCACGACATTGCCACCAGCCAAGCTCCTT
CCCAAGAAATGCTGGACCGATTCGCGGCCGTCTACACCCCCTtggtcctc
ttcctttccttcggcTTGGCCCTGGCACCGGAGGTCTGGGCTGTCCTACG
GGGCAAGCCTGTGGCGGAAGTCGGGTGGCAGCAAGGTCTTTACCGTGGCT
TGGAGCTCTTGGTCCTTGCCTGTCCATGTGCCTTGGCCATggccacgccc
ctccctttcctgacTACCCTGGCGGCCTCCGCGGCGCGCGCAGGGGTCTT
GTTCAAAAGCGCCACCGCCTTGGAAACCTTGAGTACGGTCCAAGTCCTGG
CGTGCGACAAAACCGGTACCTTGACCGAAGGACGGTTCATGGTGAGCGGG
CGTTTGACCCTGCACCGAACCGCAAAACACGACCCGGATGTAGTCCGCCT
GTTGGCGGCCAGCGTGGAGAGCAACGTGGCCCATCGCTTGTCGGCGGCGG
TCGTTTTGGATGCCCTGGGGTGTGTCACGGAAGCCTTTTATTCGAACAAA
GAGGACGGGCAAAAGCCGGAGGGGAACCCGGTGCCGAAAAAAAAACTGGC
CAAAGTCTCCAAACTCCGCCacatggagggggtgggcgtggagggcgaaT
GCGTCCTGGAGGACTACGAGGAAAGCTTCTTGGTCACGGTCGGAAACCGG
GCATTGTTGGACGATGCGGATTTAGACGACCCGGAGGTACAAGCCTTCCT
AGAGCGCTACCAGGGCGAAGCCCACTTGTTCGTTTTGGTGGACGGCGTGC
CCGAAATGGCCCTGAGTTTGACGGATCGAGTCCGGGCGGAGGCGCCCGCC
ATGCTTCGGGCCTTGGCAGACGAGTTGCAGGTGGAAACCACCCTCTTGAC
CGGTGACTCGGAGGGGGTAGCCAAGGCGTTGCAAGCCAAGGTGGGCCCTG
ACCTTCTCCCGACGGTGCTGGCGCGCCTGAAACCGAGGGACAAACTGCAC
TGGATCGAGGAGCGGCAACGCCAGCCCCCGCCAGTGAAGGCAGCCTTCTC
GTCGTTGCGCCGTACCTCTGTCTCCAGCTACGTGACCGTATCGGCCTCGG
CCACCACGGCGCCTTACCAGCGGATAGACGATGTCAACACCTTGGATCAA
TTGGAGGGGGCAGCACGAGCGGATAAGTCGGACAAGCGGGATCACTCGGG
CACacggggaaaagatgggaaGCAGTGCATCGTGGCCATGCTGGGAGACG
GTGTAAACgacgcgccctccctccgcgcggCCGACGTCGGACTGGCCATG
GGAGAGCATGGCATGGCTCTGGCTGTCCAAGCCGCCGATGTGGTGCTGTT
GTCGGACGACCTGTCGCGGGTTCCGCAGGCCATTCGTATGTCGCATTTTG
TGCGGTGGATTGTTGTGCAGAATCTGTTCCTGGCGCTTGGTTTGAAAATC
TTTTTGATGCTTGTGATATTTTCCGGGGAAGGGCGGTTGTGGGAAGCAGT
TGCAAGCGACGGGTTAAGTTTAATGGCGGTGATTGTTAATGGCCTGCGGC
CGTTGTACGTAGCAGGGAAAATTTTTGAGGACatagaagaagaagatgtc
GTGTAA back to top
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