rna5804, rna5804 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5804
Unique Name	rna5804
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1021
Alignment location	CM002466.1:878112..879388 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100265g9.8303.mrna
Orig protein id	gnl\|cribi\|Naga_100265g9.8303
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:878112..879388 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100265g9	gene5604	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24883.1	cds5789	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5804	rna5804-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:878112..879388-
coding sequence from alignment at CM002466.1:878112..879388-

mRNA sequence

>rna5804 ID=rna5804|Name=rna5804|organism=Nannochloropsis gaditana|type=mRNA|length=1021bp
GCCTAAACAAACCACCGCAAGGGCTGCAACTTTGTCTTTCTGGTCACGGA
TGTCACCTGTCGAAGTTGTCTTTCATGCCAGGCTTGCTCACTCATATTTT
GACTCGACGATCGTACAGCAGGGCTTGATCGGGCTTGGTCACGTAGACTG
TTCTTTCCACAGGACTCGTATTCCTGCAAGTCGGCTTTTTGACCCGCTTG
AGTGGATTTTGGGTCCCACTTGCTCCCCCTTGAGTACCATTCAGGACACA
CAATATTAAATATGCAGCACAGCACCACCTGGAGCGCTTGCACGGCACAT
GCGACACAAAAATATTCCTCCCAACGCCGAGGCCGCCAGAAGGCTCGGTT
AGATCGTTCCTGCTGCTCTCTGCTCATCTTCGTCGCATTTTGCGCCCCTG
CGCCCTCCGAGGCCTTCCAAATCTTCCCATGCATCCCTTACACTGCACCA
GCGCAGCTGAAAACGTCCCGTCACACAGTTCCAGAGCATTCGTTGAGCAG
AAGAATGGCCTCCTCCCTGCTTCTCCGTCATTGGATAAACCCCTCAAGGA
CATCGGAGACGGCCACGCCCACCGCCTCTCCGACTACTTCCCCGCCTCCC
TCCTCCCCGTCTGCCCCTTCCGCGGTGAAGCTGCCCTCGGCAGATGCCAC
CAACCTGACCTACGACCGTAAGATTGTTGGAAAAGAAGTCATGTTCAAGG
CGTCCAAGAGCGCGGAGTGCGAAGTGGTACGCATGGACGGCACAAGCCAC
CGACGGGTTGGGGTAAAGGGCGGTCGGTCACGATGCTTTATGCGTGTGGG
CGCCCGTGACTCTTGTCCCTACCCTCCCCTTGATTTAACCTTAGTTTTCC
ATCCTTGCCTATTCCTTGCATTGACATTGACATTCAGGAGGAAGGCATGC
GCGCCCTCAAAGACTACATGGCCCTCCCGCCCTCCCAGTACTCTGTGCTC
GACGCCGACGCCATCGTCCGCTTGAGCGAAGACTCCTTTCGGTGAGGAGA
GAAGGGGAAGGAAGGGAAAGG

protein sequence of rna5804

>rna5804-protein ID=rna5804-protein|Name=rna5804|organism=Nannochloropsis gaditana|type=polypeptide|length=153bp
MSQTLAAANLTSSSSGHGMGGLVLTKFPIGLVATSISKVSSSALSTSSAK
APQITLTATPMPLRAELKRRNSHPLRLAPRGVNAVDGDEEETLSQTSASL
KALIIVFTIYTLIRGWNGFVEKGMDAAVEAVQQLVMLVVLVVGVAPLLDQ
YFF

mRNA from alignment at CM002466.1:878112..879388-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5804 ID=rna5804|Name=rna5804|organism=Nannochloropsis gaditana|type=mRNA|length=1277bp|location=Sequence derived from alignment at CM002466.1:878112..879388- (Nannochloropsis gaditana)
TCCCGTGTCGACTTCCTTTTGTACCGACAAGCGGCTGTTCCCAAAATTGA
CATTCGTGGTTCTTTTCGTAACTATTCATTTCTTGTGCACGGATAAATGT
GCCGGGATGGAAGCTTTCCTGGGGGGTTGAAACGTTTCGTTTCTACTCAA
GCTAGCAGCCATATCTTTCAAGTGCCTGACCCTCGGCGCCTTCAGCCCTG
TTCTGACCGATATTGAAGTAGCATGGAAACCAACACTCACGTTCGCTCCT
TTAAAACACACTTCATAAAACAAGAACATCAATCCAGACAAGGCAAGCAA
TCATGTCTCAGACTCTCGCGGCGGCTAACCTGACTTCGTCATCCTCGGGC
CATGGGATGGGGGGTCTGGTGTTGACTAAATTTCCCATCGGCCTCGTTGC
TACTTCCATTTCCAAGGTCTCCTCCTCCGCCCTGTCCACATCTTCTGCGA
AGGCCCCTCAGATCACCTTGACAGCAACGCCGATGCCACTGCGCGCGGAG
CTAAAGCGTCGGAACAGCCACCCTCTGCGATTGGCGCCAAGAGGTGTAAA
CGCGGTTGACGGTGACGAGGAGGAGACATTGTCGCAAACATCTGCCAGTC
TCAAAGCTTTAATAATCGTTTTCACCATCTATACATTAATTCGAGGATGG
AACGGCTTTGTGGAGAAAGGAATGGATGCCGCGGTCGAGGCTGTGCAGCA
ACTCGTGATGTTGGTGGTCCTCGTTGTCGGTGTGGCGCCCTTACTCGACC
AGTATTTCTTCTAGAGTGTGTGCTCTGTTGGCAATTTTAATTTTTTTATC
CTGTTGATATAAGGAAGTGCCGGTCGAACTAATAGAAAAGGCACCTCAAA
GGAGTGTTGCATGTCGTCGAGGGAGAAAACACCATGACCTCGGAGGGGCA
AGCAGATTATCCCTCGTATGACGTGACGACTAAAGTCGTTGGAGTCTGCT
TCATGTAAAAGCTAATCTTTTTGTTTATTAACTTGAATACTGACGCGCAA
ATGCCCAGTTGAGATCGGGGAGGCGCACACGAGGTGCGGGATGGAGACAA
GGGCCTCGCCCTTCGCAGCGCCTGGGAGACAACTCCTTGAGGAGGGATGG
TGCTACGGCGGCACGCGCGTGATGAAATCTATGGTATGAATTTTATATTG
AAAACGGTCTGAAAAGTAATGCGCGAGGGATGCTGTTATGGATAGAAGCG
GGCGGTCCGTACGGGGGACAGGAAAGACACGTGGGTAGGTGAAACTTTTG
ACAAAATACATACCGAGCAAACTTTGA

Coding sequence (CDS) from alignment at CM002466.1:878112..879388-

>rna5804 ID=rna5804|Name=rna5804|organism=Nannochloropsis gaditana|type=CDS|length=462bp|location=Sequence derived from alignment at CM002466.1:878112..879388- (Nannochloropsis gaditana)
ATGTCTCAGACTCTCGCGGCGGCTAACCTGACTTCGTCATCCTCGGGCCA
TGGGATGGGGGGTCTGGTGTTGACTAAATTTCCCATCGGCCTCGTTGCTA
CTTCCATTTCCAAGGTCTCCTCCTCCGCCCTGTCCACATCTTCTGCGAAG
GCCCCTCAGATCACCTTGACAGCAACGCCGATGCCACTGCGCGCGGAGCT
AAAGCGTCGGAACAGCCACCCTCTGCGATTGGCGCCAAGAGGTGTAAACG
CGGTTGACGGTGACGAGGAGGAGACATTGTCGCAAACATCTGCCAGTCTC
AAAGCTTTAATAATCGTTTTCACCATCTATACATTAATTCGAGGATGGAA
CGGCTTTGTGGAGAAAGGAATGGATGCCGCGGTCGAGGCTGTGCAGCAAC
TCGTGATGTTGGTGGTCCTCGTTGTCGGTGTGGCGCCCTTACTCGACCAG
TATTTCTTCTAG

Synonyms

Publications