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Properties
| Property Name | Value |
|---|
| Product | Transmembrane receptor, eukaryota |
| Orig transcript id | gnl|cribi|Naga_100116g11.9022.mrna |
| Orig protein id | gnl|cribi|Naga_100116g11.9022 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:849520..851576 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5790 ID=rna5790|Name=rna5790|organism=Nannochloropsis gaditana|type=mRNA|length=1802bp
TAGATAGCCGCGGGCGCGTGGAAAGTGTTGCGGTCACTGTTTTCCGGTAT
CGCTGAAGTCTCACTTTGCTTCACGTCGAGGACGAACTCGCTTCTACTTA
GCAACCATGCCGCTACAACACGGCTGCATCCAGGCTTATTCGCCGTGGTG
CCGAGTCATCTCTTCTATTCTTCTCCTTGGGGTCCTTGCAAGAGTCGCCG
ATGGTATGGTTCAAAATTTCCATTACGAGGACGAGACAAGCCCCATGTTC
CAGCTCGAGACTTTTGGGTTTCGACCAGGGGGAGTGATGGAACTGAATTT
TAACCACTTCGTCGTCAAAGTTCCTGAGAAAACAAAGGATGCGACCGTCC
GTGCCGGTTTTTTGATGCATTTGACCGAAAGCGAGACGACTGCCCGGCAG
GACTTGGAGGAGGCGCTCGAACGTCTGGCGGCGGACCAGGAGGACTGTTG
GCTGGATCACCGGGGGCCGAACGACGAGGTCATCGACCTCTCCGACCCCG
AAAGCTGGGCGGAAAAGCAGGTGCAGCACACCGTGGCGCCCGGGGAGGAA
GGGCTCTACTCCTTGATTTTCGTTCGCTGCCAGCCCGCTCCCTCGGCCGT
ATCCTTCAAAATCCACGCCAAATTCTACAACCCCGGACCGAATTACCTAT
CTGCGGGGGAGGCCCCCTTGCCGACTCTGTACTTCGTCTTTTTCCTCTGC
TACCTGGTGGCGATGGCGGCCTGGGTGGCGGTCTGTCGGCGCCGGAAGGA
GCACGTCCACCGCATCCACAACATGATGCTGGCTCTGCTCGTGTTTAAAA
CCCTCTCCCTTCTCTTCGAGGCGGTGCGTTTCCAGGCCTACCAGAAACAC
GGGCTCACAGGCCATGCGGACGGGTGGGCGGTCGTGTACTACGTCTTCGC
CTTTGTGAAGGGGATCATGCGCTTCGTTGTGATCCTCCTGATCGGGACCG
GGTGGAGCCTGCTCAAGCCCTACCTGTCCGACCGGGAGAAGAAGGTGGTG
CTCGTGGTCCTGGCCTTGCAGGTGATCGATAACACGGCCATGGTTGTGCT
GGACGAGTTGTCGCAGACGTCGCCCGGATCGGCATCGTGGCTGACATGGA
GGGATATCTTCCATTTGATCGACATCGTATGCTGCTGCGCCATTCTCTTC
CCCATCGTCTGGTCCATCCGCCACCTCCGACAAGCGGCGGCCGCGGACGG
CAAGATGGAGCATATCCTGCGGAAGCTGACCTTGTTCCGGCAATTCTACC
TGATGGTGGTCGCCTACATCTATTTCACCCGCATCGTGGTGTTCCTGGTC
AAAGCCACGCTTCCCTACGATCTCCTCTGGCTCCAAGCGTTCTTCGATGA
GGGGGCCACATTTTTGTTCTACACAGTGACAGGATGGAAATTTTGCCCGG
CGGACGCAAACCCATATTTGGCGGTCGACACGGACGAACGAGACGCGGCA
GAATTGGAAGAGTTTGGACTGGACGATTATGAGGACGATTTGGGCGAGGA
GGAGGAGGACATGAGGGAGGAAGGGAGGGATGTGGGCGGCATTGAGATGA
GGGAAGGTCCGGGGCACGGGAGGCATCGTGGTCAACCCAAGCCAGGGGGG
TGGAATTCTATCGTGAGCGTATAGAAGAGAGTTAATGGAAAGAGCCAAAA
AAGGAGGACAAGAAAGTCAAGCACAGCACTGTATGTAAGATATAGCATGT
CCTGCCACAAAACGGAGGAAATGGAGGAAGACAGACGCAAGAAACTGTAA
TTGAATAAGGGCAAGAAACTAAATGGTACGGCGGATGACGAGCAGGAAAT
CA back to topprotein sequence of rna5790 >rna5790-protein ID=rna5790-protein|Name=rna5790|organism=Nannochloropsis gaditana|type=polypeptide|length=512bp
MVRGKGESLGQARGPLICLRTELVQNFDFVSRCTRRMFCFVRMRDRCKVQ
LSLALLTWPSPPGHPLVMELNFNHFVVKVPEKTKDATVRAGFLMHLTESE
TTARQDLEEALERLAADQEDCWLDHRGPNDEVIDLSDPESWAEKQVQHTV
APGEEGLYSLIFVRCQPAPSAVSFKIHAKFYNPGPNYLSAGEAPLPTLYF
VFFLCYLVAMAAWVAVCRRRKEHVHRIHNMMLALLVFKTLSLLFEAVRFQ
AYQKHGLTGHADGWAVVYYVFAFVKGIMRFVVILLIGTGWSLLKPYLSDR
EKKVVLVVLALQVIDNTAMVVLDELSQTSPGSASWLTWRDIFHLIDIVCC
CAILFPIVWSIRHLRQAAAADGKMEHILRKLTLFRQFYLMVVAYIYFTRI
VVFLVKATLPYDLLWLQAFFDEGATFLFYTVTGWKFCPADANPYLAVDTD
ERDAAELEEFGLDDYEDDLGEEEEDMREEGRDVGGIEMREGPGHGRHRGQ
PKPGGWNSIVSV back to topmRNA from alignment at CM002466.1:849520..851576+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5790 ID=rna5790|Name=rna5790|organism=Nannochloropsis gaditana|type=mRNA|length=2057bp|location=Sequence derived from alignment at CM002466.1:849520..851576+ (Nannochloropsis gaditana)
GGGTATGGCGACTCGTGGACGTGTGGTGTGATGCCTACGGCGTGTGTGCA
TAGgaggacttggaggaggctgagatggtgagggggaagggggaatcCCT
CGGACAAGCGAGGGGTCCCTTAATATGTCTGCGCACCGAACTCGTCCAAA
ATTTTGATTTTGTGTCGAGATGTACACGTCGAATGTTTTGCTTCGTGCGT
ATGCGTGACCGCTGTAAAGTTCAACTCagtctcgccctcctcacaTGGCC
ATCCCCGCCGGGGCACCCTCTAGTGATGGAACTGAATTTTAACCACTTCG
TCGTCAAAGTTCCTGAGAAAACAAAGGATGCGACCGTCCGTGCCGGTTTT
TTGATGCATTTGACCGAAAGCGAGACGACTGCCCGGCaggacttggagga
ggcgctcgaACGTCTGGCGGCGGACCAGGAGGACTGTTGGCTGGATCACC
GGGGGCCGAACGACGAGGTCATCGACCTCTCCGACCCCGAAAGCTGGGCG
GAAAAGCAGGTGCAGCACACCGTGGcgcccggggaggaagggctctACTC
CTTGATTTTCGTTCGCTGCCAGCCCGCTCCCTCGGCCGTATCCTTCAAAA
TCCACGCCAAATTCTACAACCCCGGACCGAATTACCTATCTGCGGGGGAG
GCCCCCTTGCCGACTCTGTacttcgtctttttcctctgctacctggtggc
gatggcggccTGGGTGGCGGTCTGTCGGCGCCGGAAGGAGCACGTCCACC
GCATCCACAACATGATGCTGGCTCTGCTCGTGTTTAAaaccctctccctt
ctcttcgagGCGGTGCGTTTCCAGGCCTACCAGAAACACGGGCTCACAGG
CCATGCGGACGGGTGGGCGGTCGTGTACTACGTCTTCGCCTTTGTGAAGG
GGATCATGCGCTTCGTTGTGATCCTCCTGATCGGGACCGGGTGGAGCCTG
CTCAAGCCCTACCTGTCCGaccgggagaagaaggtggtgCTCGTGGTCCT
GGCCTTGCAGGTGATCGATAACACGGCCATGGTTGTGCTGGACGAGTTGT
CGCAGACGTCGCCCGGATCGGCATCGTGGCTGGTAagtcgggaaggagga
aggaagggaaaggtcCAGCGAGAAAAGCAGACCAGCAAGGCGCCCGGGGA
TGATAGGGGTAGGGGTTGGTTACGATGGTGTTTTTGTAATTGCCCGTGTG
TCTGTCTCTCAGGGCGCCGTCTGATGCGTCAGGGCTCGGGGGTCTAGGTA
GTAGCCCTTCGTCCCAGCCTCACCGTTCCCCTTGcatcctgcttcctctc
cctccctccctccctttcctccttccatgaTCTCCTTCCGCACGCCAGAC
ATGGAGGGATATCTTCCATTTGATCGACATCGTATGCTGCTGCGCCattc
tcttccccatcgTCTGGTCCATCCGCCACCTCCGACAAGCGGCGGCCGCG
GACGGCAAGATGGAGCATATCCTGCGGAAGCTGACCTTGTTCCGGCAATT
CTACCTGATGGTGGTCGCCTACATCTATTTCACCCGCATCGTGGTGTTCC
TGGTCAAAGCCACGCTTCCCTACGATCTCCTCTGGCTCCAAGCGTTCTTC
GATGAGGGGGCCACATTTTTGTTCTACACAGTGACAGGATGGAAATTTTG
CCCGGCGGACGCAAACCCATATTTGGCGGTCGACACGGACGAACGAGACG
CGGCAGAATTGGAAGAGTTTGGACTGGACGATTATGAGGACGAtttgggc
gaggaggaggaggacatgagggaggaagggagggatgtgggCGGCATTGA
GATGAGGGAAGGTCCGGGGCACGGGAGGCATCGTGGTCAACCCAAGCCAG
GGGGGTGGAATTCTATCGTGAGCGTATAGAAGAGAGTTAATGGAAAGAGc
caaaaaaggaggacaagaaagtCAAGCACAGCACTGTATGTAAGATATAG
CATGTCCTGCCACAAaacggaggaaatggaggaagacagaCGCAAGAAAC
TGTAATTGAATAAGGGCAAGAAACTAAATGGTACGGCGGATGACGAGCAG
GAAATCA back to topCoding sequence (CDS) from alignment at CM002466.1:849520..851576+ >rna5790 ID=rna5790|Name=rna5790|organism=Nannochloropsis gaditana|type=CDS|length=3078bp|location=Sequence derived from alignment at CM002466.1:849520..851576+ (Nannochloropsis gaditana)
atggtgagggggaagggggaatcCCTCGGACAAGCGAGGGGTCCCTTAAT
ATGTCTGCGCACCGAACTCGTCCAAAATTTTGATTTTGTGTCGAGATGTA
CACGTCGAATGTTTTGCTTCGTGCGTATGCGTGACCGCTGTAAAGTTCAA
CTCagtctcgccctcctcacaTGGCCATCCCCGCCGGGGCACCCTCTAGT
GATGGAACTGAATTTTAACCACTTCGTCGTCAAAGTTCCTGAGAAAACAA
AGGATGCGACCGTCCGTGCCGGTTTTTTGATGCATTTGACCGAAAGCGAG
ACGACTGCCCGGCaggacttggaggaggcgctcgaACGTCTGGCGGCGGA
CCAGGAGGACTGTTGGCTGGATCACCGGGGGCCGAACGACGAGGTCATCG
ACCTCTCCGACCCCGAAAGCTGGGCGGAAAAGCAGGTGCAGCACACCGTG
GcgcccggggaggaagggctctACTCCTTGATTTTCGTTCGCTGCCAGCC
CGCTCCCTCGGCCGTATCCTTCAAAATCCACGCCAAATTCTACAACCCCG
GACCGAATTACCTATCTGCGGGGGAGGCCCCCTTGCCGACTCTGTacttc
gtctttttcctctgctacctggtggcgatggcggccTGGGTGGCGGTCTG
TCGGCGCCGGAAGGAGCACGTCCACCGCATCCACAACATGATGCTGGCTC
TGCTCGTGTTTAAaaccctctcccttctcttcgagGCGGTGCGTTTCCAG
GCCTACCAGAAACACGGGCTCACAGGCCATGCGGACGGGTGGGCGGTCGT
GTACTACGTCTTCGCCTTTGTGAAGGGGATCATGCGCTTCGTTGTGATCC
TCCTGATCGGGACCGGGTGGAGCCTGCTCAAGCCCTACCTGTCCGaccgg
gagaagaaggtggtgCTCGTGGTCCTGGCCTTGCAGGTGATCGATAACAC
GGCCATGGTTGTGCTGGACGAGTTGTCGCAGACGTCGCCCGGATCGGCAT
CGTGGCTGACATGGAGGGATATCTTCCATTTGATCGACATCGTATGCTGC
TGCGCCattctcttccccatcgTCTGGTCCATCCGCCACCTCCGACAAGC
GGCGGCCGCGGACGGCAAGATGGAGCATATCCTGCGGAAGCTGACCTTGT
TCCGGCAATTCTACCTGATGGTGGTCGCCTACATCTATTTCACCCGCATC
GTGGTGTTCCTGGTCAAAGCCACGCTTCCCTACGATCTCCTCTGGCTCCA
AGCGTTCTTCGATGAGGGGGCCACATTTTTGTTCTACACAGTGACAGGAT
GGAAATTTTGCCCGGCGGACGCAAACCCATATTTGGCGGTCGACACGGAC
GAACGAGACGCGGCAGAATTGGAAGAGTTTGGACTGGACGATTATGAGGA
CGAtttgggcgaggaggaggaggacatgagggaggaagggagggatgtgg
gCGGCATTGAGATGAGGGAAGGTCCGGGGCACGGGAGGCATCGTGGTCAA
CCCAAGCCAGGGGGGTGGAATTCTATCGTGAGCGTATAGatggtgagggg
gaagggggaatcCCTCGGACAAGCGAGGGGTCCCTTAATATGTCTGCGCA
CCGAACTCGTCCAAAATTTTGATTTTGTGTCGAGATGTACACGTCGAATG
TTTTGCTTCGTGCGTATGCGTGACCGCTGTAAAGTTCAACTCagtctcgc
cctcctcacaTGGCCATCCCCGCCGGGGCACCCTCTAGTGATGGAACTGA
ATTTTAACCACTTCGTCGTCAAAGTTCCTGAGAAAACAAAGGATGCGACC
GTCCGTGCCGGTTTTTTGATGCATTTGACCGAAAGCGAGACGACTGCCCG
GCaggacttggaggaggcgctcgaACGTCTGGCGGCGGACCAGGAGGACT
GTTGGCTGGATCACCGGGGGCCGAACGACGAGGTCATCGACCTCTCCGAC
CCCGAAAGCTGGGCGGAAAAGCAGGTGCAGCACACCGTGGcgcccgggga
ggaagggctctACTCCTTGATTTTCGTTCGCTGCCAGCCCGCTCCCTCGG
CCGTATCCTTCAAAATCCACGCCAAATTCTACAACCCCGGACCGAATTAC
CTATCTGCGGGGGAGGCCCCCTTGCCGACTCTGTacttcgtctttttcct
ctgctacctggtggcgatggcggccTGGGTGGCGGTCTGTCGGCGCCGGA
AGGAGCACGTCCACCGCATCCACAACATGATGCTGGCTCTGCTCGTGTTT
AAaaccctctcccttctcttcgagGCGGTGCGTTTCCAGGCCTACCAGAA
ACACGGGCTCACAGGCCATGCGGACGGGTGGGCGGTCGTGTACTACGTCT
TCGCCTTTGTGAAGGGGATCATGCGCTTCGTTGTGATCCTCCTGATCGGG
ACCGGGTGGAGCCTGCTCAAGCCCTACCTGTCCGaccgggagaagaaggt
ggtgCTCGTGGTCCTGGCCTTGCAGGTGATCGATAACACGGCCATGGTTG
TGCTGGACGAGTTGTCGCAGACGTCGCCCGGATCGGCATCGTGGCTGACA
TGGAGGGATATCTTCCATTTGATCGACATCGTATGCTGCTGCGCCattct
cttccccatcgTCTGGTCCATCCGCCACCTCCGACAAGCGGCGGCCGCGG
ACGGCAAGATGGAGCATATCCTGCGGAAGCTGACCTTGTTCCGGCAATTC
TACCTGATGGTGGTCGCCTACATCTATTTCACCCGCATCGTGGTGTTCCT
GGTCAAAGCCACGCTTCCCTACGATCTCCTCTGGCTCCAAGCGTTCTTCG
ATGAGGGGGCCACATTTTTGTTCTACACAGTGACAGGATGGAAATTTTGC
CCGGCGGACGCAAACCCATATTTGGCGGTCGACACGGACGAACGAGACGC
GGCAGAATTGGAAGAGTTTGGACTGGACGATTATGAGGACGAtttgggcg
aggaggaggaggacatgagggaggaagggagggatgtgggCGGCATTGAG
ATGAGGGAAGGTCCGGGGCACGGGAGGCATCGTGGTCAACCCAAGCCAGG
GGGGTGGAATTCTATCGTGAGCGTATAG back to top
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