Properties
Property Name | Value |
Product | Transmembrane receptor, eukaryota |
Orig transcript id | gnl|cribi|Naga_100116g11.9021.mrna |
Orig protein id | gnl|cribi|Naga_100116g11.9021 |
Gbkey | mRNA |
Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
CM002466.1 | supercontig | CM002466.1:849173..851576 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5789 ID=rna5789|Name=rna5789|organism=Nannochloropsis gaditana|type=mRNA|length=3168bp CATCATGCAAAGTCACTACACATTGTGATCGACGACAACCTCCATCGATA ACTCACCTCCCCCTGGTCGAAACCCAAAAGTCTCGAGCTGGAACATGGGG CTTGTCTCGTCCTCGTAATGGAAATTTTGAACCATACCATCGGCGACTCT TGCAAGGACCCCAAGGAGAAGAATAGAAGAGATGACTCGGCACCACGGCG AATAAGCCTGGATGCAGCCGTGTTGTAGCGGCATGGTTGCTAAGTAGAAG CGAGTTCGTCCTCGACGTGAAGCAAAGTGAGACTTCAGCGATACCGGAAA ACAGTGACCGCAACACTTTCCACGCGCCCGCGGCTATCTACCAAGCGGGG CACGTCTGTAATTCGATGGTGGGCTACACGTGAGCGTGAGGAGTCGGTGG AATTACGACGTGAAAGAGAAAAAAATGAAAGACGGGTCTCGTTCGGCAAG CCTCGTTAGAATCAGCTTCTCGCCCTCCCGTCGGCGCATAAACTGTACCC TCTCATCTTCCCCTGCTGCTTTTGACTTTTCAGCGCTTCGTCCCAACCTT TTCTGGCATCTAGTGCTTTTATTCCTTCGACAGACTTCTTCCAAATGCTC TCGCGGATGCTTTCGGTATGACTGATCTTTTACCGTCCTCCTTCCTCCTC GCTGCCTTCGTGGGAGTATCCGTTCCTGATCATGGCACTGAAACTTCTTC TTCGGCGGGCTCGAAAGCAAGAAGTATCGTTGAACACGTGAATCTCTCTG GTGATTTGGACGGACCTCTTTTGCTGCGGCGGCACCATCCTGATGGTAGC TCTAGTCAAGCCTGGGTTCCGCCCGCCGTCCTGCTGCCCTCCAAGCCCCC CTTATCATCAATCTCTTCGGCCAGGGCCCCCTTTTCCGCATCACCACCCG GTCTACTCACGAAAACAGACTGGAAAGGTAAAGGGCGGTACACGATCATA GCTCCCGGTGCCAGCGTTCTTGAAGGGACAAAGATACTATCGTCACCGTG CTTTACGGCCGTCATTGCCAGTAAAGTCCTTGATAAATGGTGCACGGTCT GTCTTCGAAGGCTTCCCGCCAAAGCACGCAGGCTTGGGTGTAAGAGTTGC AACATGGCCTACTATTGCTCCGAGGCTTGCTTGGACCGAGACGGCTCTTT GCATGACCTGATCTGCCTCTTCCTCGGTCGCGTCCGTGCACACGCCCGCC GACTAGCAGCAAACCAGCGCCTACCAAAACAGCCAGAAACGAGCCCACAG CCACGGCAAAGTAGTCCACAATTTTCCTTTTTTGACACAGACACTCTCCG CTTGGCCGTCCAAGTGATTGGCAGCTTGGACCACAGCTATCATTTCCTCC GCAGCCGCAAGCACACTTCCGGCTCCATCCCCCCCGACCACAGCCGAGAG CCTCCGGAGCCAATGTCCAAGATCATGGATTTAAGCGTCCAGGAGGATGC GGAGTATGGTACAATCTGGAAGGAAGCTTTGGAGTTGGCGCGTGGACTGG GGGCGCCCATGACCGAAGCAGAGCGGGAGGCATGTGGGGGCGTGGGGAGA CGCGGAGAGAATTATCTCGAGGGAAATGCCGAGTTTTTCGCGGGCCTGCT GGTGCGTCTGAGGGTCAATTGTCACCCTTTCCGGGCTTACAAGCCCCGAA ATTCCAAACTACAGGGTTCTGACGATCGGCACCACGAGGCAGGGGGGGCC CCTGCCTTAGGTCTTTTCCTCAGCCTGGCCAGCACTGTGAACCATTCTTG CCGGCCGGTCGCGTCATTCAACGCCTTGATTCGTCCACAGCCTGCCGAGT CAAGAAATAGCCAGGGAGAAAGTGGGCAGCGATGGTGGTATCAGGACGTG GTGGCCGAATTGCGAGCCGTTCGGGCCATGACGGCGGGGGAGGAAGTTAC GTATTCCTATCTGGAACACTTGCATTTCAGTCGGAAAGAACGGCAGGACT TTTTGTGGCAAGCCTTTCGATTCCACTGTCAGTGTCCACGCTGCGAAGAG GAGGGAGGGAAGGAGGGCGGGAGCGAGGGAGGGACGCAGGGATGGGCGTG CTTCACGTGCGGAGGACGGGTGGAAGCGATCCGGGAGGATACGGGACGCC AGAGAACGAGAGGGCAGGAAGGGAGTAAGCAGAGTTGTGGGGAGGTGGCC CGCGTGGAGGGAAATGACTGGATACAATGCCGGAACCAACCGCGTGCCTG CCCCACGCGGACGCCGGAGTCGCTCTACCTGAGGGTTGAGGGACAGGGTG CAAAGCTTCTTGACAGGGGCATTCGCGCCACCACCATCTCTTTGTCCTCT TCCCTTTCCCGCCCATTTCCCGTTCAGGAAGGCAATATGAGGGGGGGCAC AGGGAAGGATGACCAACAAAAAGCAATGCGGGCATTGGTCAAGTGGTTGG CGGGATCAGGGAAGACCGTTGGATGCAAGGAAGGGAAAAAGGAGGAAGTG GAAGGAAGCGCACGTTTTTGGAACGACACGCATCCTCAACGTCACATGGC GGCCATGCTCTTGGTGCGAATGGCGCAGACGGGCGGGAGAACCGAAGAAA ATAAATCGACGGCTACTAAGGAAGGGCAGCCCCGGCCTGGGACGACGGTG GAGGAGGATGTAGCCCTGGCCGTCGGGACGGGGGTATTAAACATGTATAT GGCAGCTCATGGGCTCGAAAGACAGCCGCACGGAGCAACGTTGTCCATGT TGAAGGTCAAGGCAATGTGGAGGCTGGTGCAGCGCCTGGAGAGGGGAGGA GAATCGGTAAGTAGGGCCCAGGTATGGAGACTGGCCATGAGGCATGCGGC AACGAGGGAGGGGGAAAAGTCTTTGGATTTGTTTAGAATAGTTCACGGCA GTGATCACCCGCTCACTCTGGAGGCAGTCAGGGCCTTGAAATCTCTGGAC GCAGGGGCATTTGGGGATATATGTGACATGCCCGCATGAGCGCTTGTGGG CCGTTCCTGAGTGTTCCCCCTGATCCCCGGCATGCCAGCTTCTCATTTTT TTTAGATAACAGAGATTGAGGAACTTCTAGCGTACTAAAAAGGACAGAGA CTACATTTGGACGGCATGACTTTCTTTCTTCCGAAACAAAGGGGGATATC TGGCAAAGACTTGGTTTTTGGTTCGTTGAATGACAAAGCATTATTCGAAT AAATTACACTGTTCTGGA back to topprotein sequence of rna5789 >rna5789-protein ID=rna5789-protein|Name=rna5789|organism=Nannochloropsis gaditana|type=polypeptide|length=505bp MPLQHGCIQAYSPWCRVISSILLLGVLARVADGMVQNFHYEDETSPMFQL ETFGFRPGGVMELNFNHFVVKVPEKTKDATVRAGFLMHLTESETTARQDL EEALERLAADQEDCWLDHRGPNDEVIDLSDPESWAEKQVQHTVAPGEEGL YSLIFVRCQPAPSAVSFKIHAKFYNPGPNYLSAGEAPLPTLYFVFFLCYL VAMAAWVAVCRRRKEHVHRIHNMMLALLVFKTLSLLFEAVRFQAYQKHGL TGHADGWAVVYYVFAFVKGIMRFVVILLIGTGWSLLKPYLSDREKKVVLV VLALQVIDNTAMVVLDELSQTSPGSASWLTWRDIFHLIDIVCCCAILFPI VWSIRHLRQAAAADGKMEHILRKLTLFRQFYLMVVAYIYFTRIVVFLVKA TLPYDLLWLQAFFDEGATFLFYTVTGWKFCPADANPYLAVDTDERDAAEL EEFGLDDYEDDLGEEEEDMREEGRDVGGIEMREGPGHGRHRGQPKPGGWN SIVSV back to topmRNA from alignment at CM002466.1:849173..851576+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5789 ID=rna5789|Name=rna5789|organism=Nannochloropsis gaditana|type=mRNA|length=2404bp|location=Sequence derived from alignment at CM002466.1:849173..851576+ (Nannochloropsis gaditana) TAGATAGCCGCGGGCGCGTGGAAAGTGTTGCGGTCACTGTTTTCCGGTAT
CGCTGAAGTCTCACTTTGCTTCACGTCGAGGACGAACTCGCTTCTACTTA
GCAACCATGCCGCTACAACACGGCTGCATCCAGGCTTATTCGCCGTGGTG
CCGAGTCATCTCTTCtattcttctccttggggTCCTTGCAAGAGTCGCCG
ATGGTATGGTTCAAAATTTCCATTACGAGGACGAGACAAGCCCCATGTTC
CAGCTCGAGACTTTTGGGTTTCGACCAGGGGGAGGTGAGTTATCGATGGA
GGTTGTCGTCGATCACAATGTGTAGTGACTTTGCATGATGTAGCTTTGGG
TATGGCGACTCGTGGACGTGTGGTGTGATGCCTACGGCGTGTGTGCATAG
gaggacttggaggaggctgagatggtgagggggaagggggaatcCCTCGG
ACAAGCGAGGGGTCCCTTAATATGTCTGCGCACCGAACTCGTCCAAAATT
TTGATTTTGTGTCGAGATGTACACGTCGAATGTTTTGCTTCGTGCGTATG
CGTGACCGCTGTAAAGTTCAACTCagtctcgccctcctcacaTGGCCATC
CCCGCCGGGGCACCCTCTAGTGATGGAACTGAATTTTAACCACTTCGTCG
TCAAAGTTCCTGAGAAAACAAAGGATGCGACCGTCCGTGCCGGTTTTTTG
ATGCATTTGACCGAAAGCGAGACGACTGCCCGGCaggacttggaggaggc
gctcgaACGTCTGGCGGCGGACCAGGAGGACTGTTGGCTGGATCACCGGG
GGCCGAACGACGAGGTCATCGACCTCTCCGACCCCGAAAGCTGGGCGGAA
AAGCAGGTGCAGCACACCGTGGcgcccggggaggaagggctctACTCCTT
GATTTTCGTTCGCTGCCAGCCCGCTCCCTCGGCCGTATCCTTCAAAATCC
ACGCCAAATTCTACAACCCCGGACCGAATTACCTATCTGCGGGGGAGGCC
CCCTTGCCGACTCTGTacttcgtctttttcctctgctacctggtggcgat
ggcggccTGGGTGGCGGTCTGTCGGCGCCGGAAGGAGCACGTCCACCGCA
TCCACAACATGATGCTGGCTCTGCTCGTGTTTAAaaccctctcccttctc
ttcgagGCGGTGCGTTTCCAGGCCTACCAGAAACACGGGCTCACAGGCCA
TGCGGACGGGTGGGCGGTCGTGTACTACGTCTTCGCCTTTGTGAAGGGGA
TCATGCGCTTCGTTGTGATCCTCCTGATCGGGACCGGGTGGAGCCTGCTC
AAGCCCTACCTGTCCGaccgggagaagaaggtggtgCTCGTGGTCCTGGC
CTTGCAGGTGATCGATAACACGGCCATGGTTGTGCTGGACGAGTTGTCGC
AGACGTCGCCCGGATCGGCATCGTGGCTGGTAagtcgggaaggaggaagg
aagggaaaggtcCAGCGAGAAAAGCAGACCAGCAAGGCGCCCGGGGATGA
TAGGGGTAGGGGTTGGTTACGATGGTGTTTTTGTAATTGCCCGTGTGTCT
GTCTCTCAGGGCGCCGTCTGATGCGTCAGGGCTCGGGGGTCTAGGTAGTA
GCCCTTCGTCCCAGCCTCACCGTTCCCCTTGcatcctgcttcctctccct
ccctccctccctttcctccttccatgaTCTCCTTCCGCACGCCAGACATG
GAGGGATATCTTCCATTTGATCGACATCGTATGCTGCTGCGCCattctct
tccccatcgTCTGGTCCATCCGCCACCTCCGACAAGCGGCGGCCGCGGAC
GGCAAGATGGAGCATATCCTGCGGAAGCTGACCTTGTTCCGGCAATTCTA
CCTGATGGTGGTCGCCTACATCTATTTCACCCGCATCGTGGTGTTCCTGG
TCAAAGCCACGCTTCCCTACGATCTCCTCTGGCTCCAAGCGTTCTTCGAT
GAGGGGGCCACATTTTTGTTCTACACAGTGACAGGATGGAAATTTTGCCC
GGCGGACGCAAACCCATATTTGGCGGTCGACACGGACGAACGAGACGCGG
CAGAATTGGAAGAGTTTGGACTGGACGATTATGAGGACGAtttgggcgag
gaggaggaggacatgagggaggaagggagggatgtgggCGGCATTGAGAT
GAGGGAAGGTCCGGGGCACGGGAGGCATCGTGGTCAACCCAAGCCAGGGG
GGTGGAATTCTATCGTGAGCGTATAGAAGAGAGTTAATGGAAAGAGccaa
aaaaggaggacaagaaagtCAAGCACAGCACTGTATGTAAGATATAGCAT
GTCCTGCCACAAaacggaggaaatggaggaagacagaCGCAAGAAACTGT
AATTGAATAAGGGCAAGAAACTAAATGGTACGGCGGATGACGAGCAGGAA
ATCA back to topCoding sequence (CDS) from alignment at CM002466.1:849173..851576+ >rna5789 ID=rna5789|Name=rna5789|organism=Nannochloropsis gaditana|type=CDS|length=4554bp|location=Sequence derived from alignment at CM002466.1:849173..851576+ (Nannochloropsis gaditana) ATGCCGCTACAACACGGCTGCATCCAGGCTTATTCGCCGTGGTGCCGAGT CATCTCTTCtattcttctccttggggTCCTTGCAAGAGTCGCCGATGGTA TGGTTCAAAATTTCCATTACGAGGACGAGACAAGCCCCATGTTCCAGCTC GAGACTTTTGGGTTTCGACCAGGGGGAGTGATGGAACTGAATTTTAACCA CTTCGTCGTCAAAGTTCCTGAGAAAACAAAGGATGCGACCGTCCGTGCCG GTTTTTTGATGCATTTGACCGAAAGCGAGACGACTGCCCGGCaggacttg gaggaggcgctcgaACGTCTGGCGGCGGACCAGGAGGACTGTTGGCTGGA TCACCGGGGGCCGAACGACGAGGTCATCGACCTCTCCGACCCCGAAAGCT GGGCGGAAAAGCAGGTGCAGCACACCGTGGcgcccggggaggaagggctc tACTCCTTGATTTTCGTTCGCTGCCAGCCCGCTCCCTCGGCCGTATCCTT CAAAATCCACGCCAAATTCTACAACCCCGGACCGAATTACCTATCTGCGG GGGAGGCCCCCTTGCCGACTCTGTacttcgtctttttcctctgctacctg gtggcgatggcggccTGGGTGGCGGTCTGTCGGCGCCGGAAGGAGCACGT CCACCGCATCCACAACATGATGCTGGCTCTGCTCGTGTTTAAaaccctct cccttctcttcgagGCGGTGCGTTTCCAGGCCTACCAGAAACACGGGCTC ACAGGCCATGCGGACGGGTGGGCGGTCGTGTACTACGTCTTCGCCTTTGT GAAGGGGATCATGCGCTTCGTTGTGATCCTCCTGATCGGGACCGGGTGGA GCCTGCTCAAGCCCTACCTGTCCGaccgggagaagaaggtggtgCTCGTG GTCCTGGCCTTGCAGGTGATCGATAACACGGCCATGGTTGTGCTGGACGA GTTGTCGCAGACGTCGCCCGGATCGGCATCGTGGCTGACATGGAGGGATA TCTTCCATTTGATCGACATCGTATGCTGCTGCGCCattctcttccccatc gTCTGGTCCATCCGCCACCTCCGACAAGCGGCGGCCGCGGACGGCAAGAT GGAGCATATCCTGCGGAAGCTGACCTTGTTCCGGCAATTCTACCTGATGG TGGTCGCCTACATCTATTTCACCCGCATCGTGGTGTTCCTGGTCAAAGCC ACGCTTCCCTACGATCTCCTCTGGCTCCAAGCGTTCTTCGATGAGGGGGC CACATTTTTGTTCTACACAGTGACAGGATGGAAATTTTGCCCGGCGGACG CAAACCCATATTTGGCGGTCGACACGGACGAACGAGACGCGGCAGAATTG GAAGAGTTTGGACTGGACGATTATGAGGACGAtttgggcgaggaggagga ggacatgagggaggaagggagggatgtgggCGGCATTGAGATGAGGGAAG GTCCGGGGCACGGGAGGCATCGTGGTCAACCCAAGCCAGGGGGGTGGAAT TCTATCGTGAGCGTATAGATGCCGCTACAACACGGCTGCATCCAGGCTTA TTCGCCGTGGTGCCGAGTCATCTCTTCtattcttctccttggggTCCTTG CAAGAGTCGCCGATGGTATGGTTCAAAATTTCCATTACGAGGACGAGACA AGCCCCATGTTCCAGCTCGAGACTTTTGGGTTTCGACCAGGGGGAGTGAT GGAACTGAATTTTAACCACTTCGTCGTCAAAGTTCCTGAGAAAACAAAGG ATGCGACCGTCCGTGCCGGTTTTTTGATGCATTTGACCGAAAGCGAGACG ACTGCCCGGCaggacttggaggaggcgctcgaACGTCTGGCGGCGGACCA GGAGGACTGTTGGCTGGATCACCGGGGGCCGAACGACGAGGTCATCGACC TCTCCGACCCCGAAAGCTGGGCGGAAAAGCAGGTGCAGCACACCGTGGcg cccggggaggaagggctctACTCCTTGATTTTCGTTCGCTGCCAGCCCGC TCCCTCGGCCGTATCCTTCAAAATCCACGCCAAATTCTACAACCCCGGAC CGAATTACCTATCTGCGGGGGAGGCCCCCTTGCCGACTCTGTacttcgtc tttttcctctgctacctggtggcgatggcggccTGGGTGGCGGTCTGTCG GCGCCGGAAGGAGCACGTCCACCGCATCCACAACATGATGCTGGCTCTGC TCGTGTTTAAaaccctctcccttctcttcgagGCGGTGCGTTTCCAGGCC TACCAGAAACACGGGCTCACAGGCCATGCGGACGGGTGGGCGGTCGTGTA CTACGTCTTCGCCTTTGTGAAGGGGATCATGCGCTTCGTTGTGATCCTCC TGATCGGGACCGGGTGGAGCCTGCTCAAGCCCTACCTGTCCGaccgggag aagaaggtggtgCTCGTGGTCCTGGCCTTGCAGGTGATCGATAACACGGC CATGGTTGTGCTGGACGAGTTGTCGCAGACGTCGCCCGGATCGGCATCGT GGCTGACATGGAGGGATATCTTCCATTTGATCGACATCGTATGCTGCTGC GCCattctcttccccatcgTCTGGTCCATCCGCCACCTCCGACAAGCGGC GGCCGCGGACGGCAAGATGGAGCATATCCTGCGGAAGCTGACCTTGTTCC GGCAATTCTACCTGATGGTGGTCGCCTACATCTATTTCACCCGCATCGTG GTGTTCCTGGTCAAAGCCACGCTTCCCTACGATCTCCTCTGGCTCCAAGC GTTCTTCGATGAGGGGGCCACATTTTTGTTCTACACAGTGACAGGATGGA AATTTTGCCCGGCGGACGCAAACCCATATTTGGCGGTCGACACGGACGAA CGAGACGCGGCAGAATTGGAAGAGTTTGGACTGGACGATTATGAGGACGA tttgggcgaggaggaggaggacatgagggaggaagggagggatgtgggCG GCATTGAGATGAGGGAAGGTCCGGGGCACGGGAGGCATCGTGGTCAACCC AAGCCAGGGGGGTGGAATTCTATCGTGAGCGTATAGATGCCGCTACAACA CGGCTGCATCCAGGCTTATTCGCCGTGGTGCCGAGTCATCTCTTCtattc ttctccttggggTCCTTGCAAGAGTCGCCGATGGTATGGTTCAAAATTTC CATTACGAGGACGAGACAAGCCCCATGTTCCAGCTCGAGACTTTTGGGTT TCGACCAGGGGGAGTGATGGAACTGAATTTTAACCACTTCGTCGTCAAAG TTCCTGAGAAAACAAAGGATGCGACCGTCCGTGCCGGTTTTTTGATGCAT TTGACCGAAAGCGAGACGACTGCCCGGCaggacttggaggaggcgctcga ACGTCTGGCGGCGGACCAGGAGGACTGTTGGCTGGATCACCGGGGGCCGA ACGACGAGGTCATCGACCTCTCCGACCCCGAAAGCTGGGCGGAAAAGCAG GTGCAGCACACCGTGGcgcccggggaggaagggctctACTCCTTGATTTT CGTTCGCTGCCAGCCCGCTCCCTCGGCCGTATCCTTCAAAATCCACGCCA AATTCTACAACCCCGGACCGAATTACCTATCTGCGGGGGAGGCCCCCTTG CCGACTCTGTacttcgtctttttcctctgctacctggtggcgatggcggc cTGGGTGGCGGTCTGTCGGCGCCGGAAGGAGCACGTCCACCGCATCCACA ACATGATGCTGGCTCTGCTCGTGTTTAAaaccctctcccttctcttcgag GCGGTGCGTTTCCAGGCCTACCAGAAACACGGGCTCACAGGCCATGCGGA CGGGTGGGCGGTCGTGTACTACGTCTTCGCCTTTGTGAAGGGGATCATGC GCTTCGTTGTGATCCTCCTGATCGGGACCGGGTGGAGCCTGCTCAAGCCC TACCTGTCCGaccgggagaagaaggtggtgCTCGTGGTCCTGGCCTTGCA GGTGATCGATAACACGGCCATGGTTGTGCTGGACGAGTTGTCGCAGACGT CGCCCGGATCGGCATCGTGGCTGACATGGAGGGATATCTTCCATTTGATC GACATCGTATGCTGCTGCGCCattctcttccccatcgTCTGGTCCATCCG CCACCTCCGACAAGCGGCGGCCGCGGACGGCAAGATGGAGCATATCCTGC GGAAGCTGACCTTGTTCCGGCAATTCTACCTGATGGTGGTCGCCTACATC TATTTCACCCGCATCGTGGTGTTCCTGGTCAAAGCCACGCTTCCCTACGA TCTCCTCTGGCTCCAAGCGTTCTTCGATGAGGGGGCCACATTTTTGTTCT ACACAGTGACAGGATGGAAATTTTGCCCGGCGGACGCAAACCCATATTTG GCGGTCGACACGGACGAACGAGACGCGGCAGAATTGGAAGAGTTTGGACT GGACGATTATGAGGACGAtttgggcgaggaggaggaggacatgagggagg aagggagggatgtgggCGGCATTGAGATGAGGGAAGGTCCGGGGCACGGG AGGCATCGTGGTCAACCCAAGCCAGGGGGGTGGAATTCTATCGTGAGCGT ATAG back to top
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