rna5767, rna5767 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5767
Unique Name	rna5767
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2813
Alignment location	CM002466.1:786411..788478 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100092g6.2139.mrna
Orig protein id	gnl\|cribi\|Naga_100092g6.2139
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:786411..788478 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100092g6	gene5571	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5767	rna5767-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24916.1	cds5752	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:786411..788478+
coding sequence from alignment at CM002466.1:786411..788478+

mRNA sequence

>rna5767 ID=rna5767|Name=rna5767|organism=Nannochloropsis gaditana|type=mRNA|length=2813bp
CGATCGCCTCACCACCACACCTCTAAAAATCAAAGCCATAGAAAGCATTC
ACGTCCAGTAACCCACATCGCGGTGGCGGAAAGGTGTATTCCATGTGCTG
AAATACACGGAGCCTAGTCCGCGTGCACTGAGTTCGGGTGGACAGTGTAT
TGGCGGGGTACTAAATCAGGATTATATTTGGCTCTTCCTCTTGACTTTCA
ACTTGAAACAACGAATGCATGCCAGCCCCCTCCGAGCCTTCGACGCCAAT
GCATCTCCGTCAGTTCAAGACTCCTTGCCTGCGGACTAAGGAAAACGAGT
AGGATTTCTCCTCGTGAGCTGGAGGCGGAGTAGCTTAGTGTGGACTGCTG
AAGCGAGCAATTGCGCCCGTTTTTAAAAACCTTCAAGCTTCCTCCAACAT
TTTCGCCGCAGTTTAGATAGCTAGGGTCCCCAAAATCAGCATCAGAATGC
CGACCACGGGCTCCGCCCGCAGTAGGCTCATGCGAAGAGTCCTGCCTTTA
GTCCTCCTTCTCCTTCTCCCGACTGCTGCCGTCTTCGGCCTGAAATTCTA
CACCACCACACACAATCCTTTCGTCGCTCCACCACCAGGAGGACCACAAT
TGATCGCTACCAATCGTTTGATGATGAAAAATAGCGGGGTACTCATTCCT
CGGAGCGCGACCGCAGCAGCCGCGGCAACATCAGCAGCTGCCAGCGTTTC
TTCTTCCTCCGTGCCATTGGCCAGCGTTTTAAACGGCGTTAGTGCCTTGT
ACCACCACAGCAGCAGCAGCAGTAGTGGGGGCAGACGGAGTGGGAATGTC
CGCATGCTGGTCTGCAACGCGGCCTCCACGACGGGTATCGAGGGACAAGA
CCAAGGAAGGGCCTTTTGGGGATGGCGAGGCCTATTCTCGGCGTTTCGTC
GGGGAGGGATCAGCTCCAGGACAACAAGCCCGGCTCCTGGAGAAACGGCA
GCTCCCAGCTTGCCGGGAGGGCCTGCATCCTCCTCGAACACGTATAGAAT
CTTGTCGTCCACCTACGCTGCCTGGTCCTCGGGCGAGACGATGGCCAGGG
ACGGTGGCATCCTCTCCTTCCTGCCCCCAGGCATCCCCACGGACACGAGG
GGGATCGAGGTGGCCCTAGGGGGGGGTGAAGGTGGGAGCATGCCACTGCG
GGCGGCGGGGGTGGCGGGCACGAGTGAGAAGCGGAAAAAGAAGGTGTTGA
TCCTCATGTCCGATACCGGGGGCGGGCACCGGGCGTCGGCCCAGGCTCTG
GAGGCCGCTTTCAACGAGCTCTTTCCCAACCAGGTCGAGTGCACGACCGT
GGATATCTGGACGGATTTCGCTCCCTGGCCCTACAATCGATTCGTGCCGG
CCTATCAGTTCATGGCCAAGAACCCCCTCTACTGGAAGGCGTTCTGGGAG
TACGGGAAATTTCCCCCTTCCAAATGGGGCACGGAGGAGCTGTCGAACCT
GGCTTGTCACCACCGGTTCAAGGACTGCATTGAGGACCAAGACCCGGACC
TGATCATCTCGGTGCACCCCCTCTGTCAGGATGTGCCCCTGCGGGTTTTG
AACACGCTGGGCCGCGGGAAGCGTCAAATTCCTTTCGTGACCGTCGTCAC
CGACCTGGGAGGCGCGCACCCGACCTGGTTTCACAAGGAGGTGGACCTTT
GCTTCGTTCCCTCGGACCCAGTTCGAAAGATTGCCTTGGCCATGGGGTTG
AAACACGATCAAATCCGACAGCACGGACTGCCGATCCGGCCAGGCTTTTG
GAAGGCGGGGAAGGATAAAGGGCAGTTGCGCAGGGAGCTGGGTTTGGCCA
CGGGGGTGAGGACGGCGCTGGTTGTGGGGGGTGGGGACGGGATAGGAAAC
CTGTTGGAGATCACGGAGAGCCTTGCCTCGGCGCTGGCGGCTGGGGGATC
CGGGGGGAAGAAGAGCCAGGTGGTGGTGGTGTGTGGGAAGAACGAGGAAA
TGCGGCGGAATTTGGAGCGGCGGACGTGGCCCCCGAGCGTGAATGTGGTG
GTCAAGGGGTTTGTAAATAATATGGATGCTTGGATGGGCGCGTCGGATTG
CATCGTCACCAAGGCCGGGCCAGGGACGATTGCGGAGGCGAGTACTCGGG
GGCTGCCCGTGATGCTTTTTAACTACCTGCCCGGACAGGAAGAAGGGAAC
GTGCCCTTTGTGGTGGAAAATGGCTTTGGTGATTACAAAAAGGACCCGAA
GGCGATCGGGGAGGTGGTGTCGGGGTGGCTGATGAGCGAGGAGGTGCGGG
AGAAGATGAGCAAGAAGGCCCTGGAAGCTAGTCGCCCGAGCAGCACTACC
AACATTGCCAAGGAGATTGGCGATTTGCTGTTTGGCAATTGGCAGCTGCC
GCTACGGAAAGACACGGAGGATAAATTCAATATTTTGTTGAAAAAATTGA
TGGAGCCCGTGACGATGTGAGTGTCAGTGTGGGGTTGGGTGCAAATGGTT
TGTGGCACGAAAAAGGGGAACTGTGTAGATATAGGAAAGGGTCGTTGGTG
GGAAGTCGCGAAGCAGACTAGGTGACGACGATGTGATGCTTTAAAAATGC
TAGCAGGAAAAGGCTCATTTTCTTGGCGGAGGAAAAAGGAACTGGGAGAG
TAAATGTGCGAGGCGAGGTCGAATGTGTGTCGTATAGATTACACATAACA
TGCATGACGCCTGGACTTTCCTTGACACTAACGACACATGGGTGAAATAA
GAGTGATAAGTTGAAAGAACACACATTTAAATGCAAAATTTTGCCTCCCG
ATGTTCGACAAAAGAAGGAAAGAAATATAAAAAGCGGTAGAGCCAGTTGG
GAGATTTTCCACC

protein sequence of rna5767

>rna5767-protein ID=rna5767-protein|Name=rna5767|organism=Nannochloropsis gaditana|type=polypeptide|length=139bp
MIMSVFSKDMNTCELTHNEFMSATTSYLTTGILQVPSRTYVWLIAIQITG
RMATEGGTIAKTFKTSCIIGYQTRANVSVSRSARAIANITRSLKGLGKNT
NLCCHPSHHLLITLKLPLLGYLRIHIACALDPRQYLSFH

mRNA from alignment at CM002466.1:786411..788478+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5767 ID=rna5767|Name=rna5767|organism=Nannochloropsis gaditana|type=mRNA|length=2068bp|location=Sequence derived from alignment at CM002466.1:786411..788478+ (Nannochloropsis gaditana)
CTGATTTAGTACCCCGCCAATACACTGTCCACCCGAACTCAGTGCACGCG
GACTAGGCTCCGTGTATTTCAGCACATGGAATACACCTTTCCGCCACCGC
GATGTGGGTTACTGGACGTGAATGCTTTCTATGGCTTTGATTTTTAGAGG
TGTGGTGGTGAGGCGATCGGGAGACGCGTCGATCACGGAAGACACGAGGG
AGAGCTTAGCTAGCTCCAGGGTGCAAACGTCGGCTgaattttttcttttc
catcacatcctGGAACGGATTTTATGGAGATTCGTTTTTAATGTTTGTTT
CGTCAAGTTCTTGCGATTTCATGCGGTTGATCGCCTGATTGCCAGCTCTT
CAAAAGCATGAAAGGCCTGCCCTGTTCATAGGTTCTCGGCCCACTTGCTT
CAAAGCGTACCGTAGAGAGGTTCGTGAAGAACAGGATGGGAAAAATAGAA
GTTTATATTCACAGTTGTAGTAGGTGCATCATGTCCATGCTAAGAATTCT
CGTTACCGCTGCAAAGGGGGTAAAAGTGGCCGGTGGAGGTCTTAGGGTAC
CTCGGCAAAGCCCTTGTGGGACCAATGATAATGTCTGTCTTTAGCAAGGA
TATGAATACGTGCGAGCTAACACACAACGAATTTATGAGTGCCACGACAT
CCTATCTTACAACTGGGATTTTGCAGGTACCGTCACGTACGTACGTATGG
TTAATTGCTATACAAATAACGGGACGGATGGCAACAGAGGGTGGGACTAT
TGCCAAGACCTTTAAGACTTCGTGTATTATTGGCTATCAAACGCGCGCTA
ATGTTTCTGTATCCCGTAGCGCGCGTGCGATAGCCAATATTACACGAAGT
CTTAAAGGCCTTGGCAAGAATACCAATCTCTGTTGCCATCCGTCCCATCA
TCTTTTGATAACGCTGAAACTTCCCTTGCTTGGTTACCTTCGGATACATA
TTGCCTGTGCCCTCGATCCTCGTCAATATCTCTCTTTTCACTGAGTGCAC
GATTTAATTAATATTCCTTGATATTTCTATACGCAGCTTCAATCAAGGCA
TTGTCAAAGATCGGACTCGCGCGCTTCCTGGAATGCGACGGCCTTTACTG
TAGCAATAGACTTAGGACTGTCTTAGCATTGAGAACCTGTAGTTAATTGT
CAAGCTCGTCATTTTTTAGACACCCCTGATACCTGTATTCGCGATTTCGT
ATTGCATGGGCCTAGTCATTTGATTTTATTTATTCATTACTGCTCATTGT
GGGCGCATTGTTCATCAGCGCGCACACATTAGACCTAAAACGCTTAGACG
ATCATTGTTGATATTTTCCTTTCAATCCAAAAATATTAGGAACCGTTGAA
TTTCTTCGTTTTAATTAGTAATTTTAAAAGTCCAAGCGATTACAGATTCT
GCAAAGAAATTCTGATGAGATTTAAGCAATGTATGCTCTGATGGCATCAC
ATTGGCGAACGCGTGGTTGCAATTCAAATGTATACCATTCCACCTGTGGA
TGTCGGATTACGTCTTATCCCTTTCTCATAATTTTTTTCGACGTATGCAT
CAAAATTGTGCTCCTCTATTCATTTGTTGAGGACAAATTACTGGTTATGC
TTGAAATGAGGCGGGTGCCGTGTCAGGTTTGAGTGCGTATCGACGCACCG
CAAAATCCACCACACACTTAATTAAGACATATGACGTCTTCTTCAACAGC
TTCTCGTCTCTGCAATCAAAATGTTTTGAGAGAAAGGTATTGTAATCTTC
GTCAGTGACCGTCTCAACTAAAATGTCTGATAGTGTTTTAGACCTGAGTC
GGGCTGCCAAGGCCTCGAGTCCAATATTGCGCAGAGAGACCTCAACATCC
CTACTAGTGGTGTACAACCAAAGTTGAGCAACCATTTCTTTGTTCAAACA
AGCATTAAGAAGTGTATAAAGTCGATTCCCCATCGCAGAACACCTGTCAA
AAATCATATACCGGGGTGAAATGCGAAAAAGGGATGAAAAACTTGTAGGG
GACCAATTCGTTCATTTTCTTATTCGACAAATAAGCTCTATTGGAAAGAA
TTTGGATAGTGtatcccc

Coding sequence (CDS) from alignment at CM002466.1:786411..788478+

>rna5767 ID=rna5767|Name=rna5767|organism=Nannochloropsis gaditana|type=CDS|length=420bp|location=Sequence derived from alignment at CM002466.1:786411..788478+ (Nannochloropsis gaditana)
ATGATAATGTCTGTCTTTAGCAAGGATATGAATACGTGCGAGCTAACACA
CAACGAATTTATGAGTGCCACGACATCCTATCTTACAACTGGGATTTTGC
AGGTACCGTCACGTACGTACGTATGGTTAATTGCTATACAAATAACGGGA
CGGATGGCAACAGAGGGTGGGACTATTGCCAAGACCTTTAAGACTTCGTG
TATTATTGGCTATCAAACGCGCGCTAATGTTTCTGTATCCCGTAGCGCGC
GTGCGATAGCCAATATTACACGAAGTCTTAAAGGCCTTGGCAAGAATACC
AATCTCTGTTGCCATCCGTCCCATCATCTTTTGATAACGCTGAAACTTCC
CTTGCTTGGTTACCTTCGGATACATATTGCCTGTGCCCTCGATCCTCGTC
AATATCTCTCTTTTCACTGA

Synonyms

Publications