rna5766, rna5766 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5766
Unique Name	rna5766
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1873
Alignment location	CM002466.1:783689..786579 -

Link to JBrowse

Properties


Property Name	Value
Product	monogalactosyldiacylglycerol synthase
Orig transcript id	gnl\|cribi\|Naga_100092g5.2136.mrna
Orig protein id	gnl\|cribi\|Naga_100092g5.2136
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:783689..786579 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100092g5	gene5570	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24913.1	cds5751	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5766	rna5766-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:783689..786579-
coding sequence from alignment at CM002466.1:783689..786579-

mRNA sequence

>rna5766 ID=rna5766|Name=rna5766|organism=Nannochloropsis gaditana|type=mRNA|length=1873bp
GATGGATTCATTGCCCCTGACCTTATGTCATGACCCGTATCAACGACCAC
AACCCTACAATGTATCTTTAGACAGGTTTTCCAACTCACCTTTCTCTAGA
ATGGGGCGTGGCGGTGAGAAAACTGTCACACCTCCATCAAAATCCTTCCA
TGCTCATGGCCACTCTCTGACCGCCAGTGACCTCTCTCGAGCGGATGCCG
CATCCACTATCTCGAGCTCGGTTAGGCCCAGTAAGTCGTTGGAGGCAATG
CCCACGGAAGAATTGCGAAAGAAGGCACTGCAATACGGACACGACGCCTC
CGCGGACAGGGCCTCATTGCTTCAAATACTGGCCCCATATGGCGACATTC
TTCTTCGTACGGACGCGCCTCCCTCCCTCCCCCTCGCCCCTCCTCCCTTC
ACCCTTGCGGATATCAAAGCCGCCGTACCCAGGCATTGCTTCGAACGCTC
CTTGACCACCTCCTTCTTCCACCTCGCTTGTGACCTCGTCCTGGTTGCTC
TGCTCGGATACTTGGCCACGCTCATCGGGCACCCGGACGTGCCGACCATG
TCCCGCTACCTACTGTGGCCTCTCTACTGGTACGCGCAGGGCTCGGTGCT
GACAGGCGTGTGGGTCATTGCCCATGAATGTGGGCATCAGTCTTTTTCCC
CGTACGAACGGGTGAACAACCTGGTGGGGTGGGTCCTGCACTCCGCCCTC
CTCGTCCCGTACCATTCCTGGCGCATCTCCCACGGCAAGCACCACAACAA
CACGGGGAGCTGCGAGAACGACGAGGTGTTCGCGCCGCCAATCAAGGAAG
ACCTGATGGACGAGATCCTCCTCCACTCCCCCTTGGCCAACCTCGCCCAA
ATCATCATCATGTTGACCGTGGGATGGATGCCCGGCTACCTGTTGATGAA
TGCCACGGGACCTCGAAAGTACAAGGGCAAGAACAACAGCCACTTCGATC
CGAATTCGGCGCTGTTCTCCCCCAAGGACCGCTTGGATATCATCTGGTCG
GACATAGGCTTCTTCCTCGCTTTGGCCGGCGTGGTGTGGGCCTGCACCCA
GTACGGGTTCTCCACCGTGGGCAAGTACTACCTGCTCCCCTACATGGTGG
TGAACTATCACCTGGTGCTCATCACCTATCTCCAGCACACGGACGTCTTC
ATCCCTCATTTCCGCGGGGCAGAGTGGTCATGGTTCCGGGGGGCTCTTTG
CACTGTCGACCGCTCCTTCGGCTGGCTGCTCGACCATACGTTCCACCACA
TCTCGGACACGCACGTCTGCCATCATATCTTTAGTAAGATGCCTTTCTAT
CACGCGCAAGAAGCGAGTGAGCACATCAAGAAGGCGCTGGGGCCGTACTA
CCTGAAGGACGACACCCCGATATGGAAAGCGTTGTGGCGAAGTTATACGC
TTTGCAAGTATGTGGACACGGATAAAAATGCCGTTTTTTACAAGCACCGA
GCATCATAGTGAAGTCTTTCACCGGGGCGTGGGTCGCGAATGCGGCTTAA
TGTCCGCAGCGGCATGGGTTCACCTAAAAAGACCAAGTGTGTAGTTATGT
TTCACATCTCGAGTGGAAACGCTTGATGATGGTGATGATCAGCGAAGGAT
GGGATATATGAGAAGTATTGCCAGTATTCTTGCTGTTTTCCGTCATGTTA
GCAAACGATCACCGTTTCCTTCATATTGTGTTGGTGCATAACTGAACGAT
GTGGACACGAGAGAGGAAGAGGAGATAAGTACAACATACCTTGGATTGAC
AACGATGAAAGTTGATTGATATTTAGAAGTGGGGAGATGAGAACGAGGAC
ATACCCTCAGAAATTTACAGTAAAACTAGCTCTAGGAATAAAGAAACTGG
AAAGAAGCTTCCGTCCTTGTTTT

protein sequence of rna5766

>rna5766-protein ID=rna5766-protein|Name=rna5766|organism=Nannochloropsis gaditana|type=polypeptide|length=657bp
MPTTGSARSRLMRRVLPLVLLLLLPTAAVFGLKFYTTTHNPFVAPPPGGP
QLIATNRLMMKNSGVLIPRSATAAAAATSAAASVSSSSVPLASVLNGVSA
LYHHSSSSSSGGRRSGNVRMLVCNAASTTGIEGQDQGRAFWGWRGLFSAF
RRGGISSRTTSPAPGETAAPSLPGGPASSSNTYRILSSTYAAWSSGETMA
RDGGILSFLPPGIPTDTRGIEVALGGGEGGSMPLRAAGVAGTSEKRKKKV
LILMSDTGGGHRASAQALEAAFNELFPNQVECTTVDIWTDFAPWPYNRFV
PAYQFMAKNPLYWKAFWEYGKFPPSKWGTEELSNLACHHRFKDCIEDQDP
DLIISVHPLCQDVPLRVLNTLGRGKRQIPFVTVVTDLGGAHPTWFHKEVD
LCFVPSDPVRKIALAMGLKHDQIRQHGLPIRPGFWKAGKDKGQLRRELGL
ATGVRTALVVGGGDGIGNLLEITESLASALAAGGSGGKKSQVVVVCGKNE
EMRRNLERRTWPPSVNVVVKGFVNNMDAWMGASDCIVTKAGPGTIAEAST
RGLPVMLFNYLPGQEEGNVPFVVENGFGDYKKDPKAIGEVVSGWLMSEEV
REKMSKKALEASRPSSTTNIAKEIGDLLFGNWQLPLRKDTEDKFNILLKK
LMEPVTM

mRNA from alignment at CM002466.1:783689..786579-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5766 ID=rna5766|Name=rna5766|organism=Nannochloropsis gaditana|type=mRNA|length=2891bp|location=Sequence derived from alignment at CM002466.1:783689..786579- (Nannochloropsis gaditana)
CGATCGCCTCACCACCACACCTCTAAAAATCAAAGCCATAGAAAGCATTC
ACGTCCAGTAACCCACATCGCGGTGGCGGAAAGGTGTATTCCATGTGCTG
AAATACACGGAGCCTAGTCCGCGTGCACTGAGTTCGGGTGGACAGTGTAT
TGGCGGGGTACTAAATCAGGATTATATTTGGCTCTTCCTCTTGACTTTCA
ACTTGAAACAACGAATGCATGCCAGCCCCCTCCGAGCCTTCGACGCCAAT
GCATCTCCGTCAGTTCAAGACTCCTTGCCTGCGGACTAAGGAAAACGTAT
GTCATTTTATCAATACTGGCCAGGTCCAAGGTTTCATACTCACGTTTTCT
TGCACCCTTTTTCCTCTCTGGCAGGAGTAGGATTTCTCCTCGTGAGCTGG
AGGCGGAGTAGCTTAGTGTGGACTGCTGAAGCGAGCAATTGCGCCCGTTT
TTAAAAACCTTCAAGCTTCCTCCAACATTTTCGCCGCAGTTTAGATAGCT
AGGGTCCCCAAAATCAGCATCAGAATGCCGACCACGGGCTCCGCCCGCAG
TAGGCTCATGCGAAGAGTCCTGCCTTTAGTCCTCCTTCTCCTTCTCCCGA
CTGCTGCCGTCTTCGGCCTGAAATTCTACACCACCACACACAATCCTTTC
GTCGCTCCACCACCAGGAGGACCACAATTGATCGCTACCAATCGTTTGAT
GATGAAAAATAGCGGGGTACTCATTCCTCGGAGCGCGACCGCAGCAGCCG
CGGCAACATCAGCAGCTGCCAGCGTTTCTTCTTCCTCCGTGCCATTGGCC
AGCGTTTTAAACGGCGTTAGTGCCTTGTACCACCACAGCAGCAGCAGCAG
TAGTGGGGGCAGACGGAGTGGGAATGTCCGCATGCTGGTCTGCAACGCGG
CCTCCACGACGGGTATCGAGGGACAAGACCAAGGAAGGGCCTTTTGGGGA
TGGCGAGGCCTATTCTCGGCGTTTCGTCGGGGAGGGATCAGCTCCAGGAC
AACAAGCCCGGCTCCTGGAGAAACGGCAGCTCCCAGCTTGCCGGGAGGGC
CTGCATCCTCCTCGAACACGTATAGAATCTTGTCGTCCACCTACGCTGCC
TGGTCCTCGGGCGAGACGATGGCCAGGGACGGTGGCATCCTCTCCTTCCT
GCCCCCAGGCATCCCCACGGACACGAGGGGGATCGAGGTGGCCCTAGGGG
GGGGTGAAGGTGGGAGCATGCCACTGCGGGCGGCGGGGGTGGCGGGCACG
AGTGAGAAGCGGAAAAAGAAGGTGTTGATCCTCATGTCCGATACCGGGGG
CGGGCACCGGGCGTCGGCCCAGGCTCTGGAGGCCGCTTTCAACGAGCTCT
TTCCCAACCAGGTCGAGTGCACGACCGTGGATATCTGGACGGATTTCGCT
CCCTGGCCCTACAATCGATTCGTGCCGGCCTATCAGTTCATGGCCAAGAA
CCCCCTCTACTGGAAGGCGTTCTGGGAGTACGGGAAATTTCCCCCTTCCA
AATGGGGCACGGAGGAGCTGTCGAACCTGGCTTGTCACCACCGGTTCAAG
GACTGCATTGAGGACCAAGACCCGGACCTGATCATCTCGGTGCACCCCCT
CTGTCAGGATGTGCCCCTGCGGGTTTTGAACACGCTGGGCCGCGGGAAGC
GTCAAATTCCTTTCGTGACCGTCGTCACCGACCTGGGAGGCGCGCACCCG
ACCTGGTTTCACAAGGAGGTGGACCTTTGCTTCGTTCCCTCGGACCCAGT
TCGAAAGATTGCCTTGGCCATGGGGTTGAAACACGATCAAATCCGACAGC
ACGGACTGCCGATCCGGCCAGGCTTTTGGAAGGCGGGGAAGGATAAAGGG
CAGTTGCGCAGGGAGCTGGGTTTGGCCACGGGGGTGAGGACGGCGCTGGT
TGTGGGGGGTGGGGACGGGATAGGAAACCTGTTGGAGATCACGGAGAGCC
TTGCCTCGGCGCTGGCGGCTGGGGGATCCGGGGGGAAGAAGAGCCAGGTG
GTGGTGGTGTGTGGGAAGAACGAGGAAATGCGGCGGAATTTGGAGCGGCG
GACGTGGCCCCCGAGCGTGAATGTGGTGGTCAAGGGGTTTGTAAATAATA
TGGATGCTTGGATGGGCGCGTCGGATTGCATCGTCACCAAGGCCGGGCCA
GGGACGATTGCGGAGGCGAGTACTCGGGGGCTGCCCGTGATGCTTTTTAA
CTACCTGCCCGGACAGGAAGAAGGGAACGTGCCCTTTGTGGTGGAAAATG
GCTTTGGTGATTACAAAAAGGACCCGAAGGCGATCGGGGAGGTGGTGTCG
GGGTGGCTGATGAGCGAGGAGGTGCGGGAGAAGATGAGCAAGAAGGCCCT
GGAAGCTAGTCGCCCGAGCAGCACTACCAACATTGCCAAGGAGATTGGCG
ATTTGCTGTTTGGCAATTGGCAGCTGCCGCTACGGAAAGACACGGAGGAT
AAATTCAATATTTTGTTGAAAAAATTGATGGAGCCCGTGACGATGTGAGT
GTCAGTGTGGGGTTGGGTGCAAATGGTTTGTGGCACGAAAAAGGGGAACT
GTGTAGATATAGGAAAGGGTCGTTGGTGGGAAGTCGCGAAGCAGACTAGG
TGACGACGATGTGATGCTTTAAAAATGCTAGCAGGAAAAGGCTCATTTTC
TTGGCGGAGGAAAAAGGAACTGGGAGAGTAAATGTGCGAGGCGAGGTCGA
ATGTGTGTCGTATAGATTACACATAACATGCATGACGCCTGGACTTTCCT
TGACACTAACGACACATGGGTGAAATAAGAGTGATAAGTTGAAAGAACAC
ACATTTAAATGCAAAATTTTGCCTCCCGATGTTCGACAAAAGAAGGAAAG
AAATATAAAAAGCGGTAGAGCCAGTTGGGAGATTTTCCACC

Coding sequence (CDS) from alignment at CM002466.1:783689..786579-

>rna5766 ID=rna5766|Name=rna5766|organism=Nannochloropsis gaditana|type=CDS|length=1974bp|location=Sequence derived from alignment at CM002466.1:783689..786579- (Nannochloropsis gaditana)
ATGCCGACCACGGGCTCCGCCCGCAGTAGGCTCATGCGAAGAGTCCTGCC
TTTAGTCCTCCTTCTCCTTCTCCCGACTGCTGCCGTCTTCGGCCTGAAAT
TCTACACCACCACACACAATCCTTTCGTCGCTCCACCACCAGGAGGACCA
CAATTGATCGCTACCAATCGTTTGATGATGAAAAATAGCGGGGTACTCAT
TCCTCGGAGCGCGACCGCAGCAGCCGCGGCAACATCAGCAGCTGCCAGCG
TTTCTTCTTCCTCCGTGCCATTGGCCAGCGTTTTAAACGGCGTTAGTGCC
TTGTACCACCACAGCAGCAGCAGCAGTAGTGGGGGCAGACGGAGTGGGAA
TGTCCGCATGCTGGTCTGCAACGCGGCCTCCACGACGGGTATCGAGGGAC
AAGACCAAGGAAGGGCCTTTTGGGGATGGCGAGGCCTATTCTCGGCGTTT
CGTCGGGGAGGGATCAGCTCCAGGACAACAAGCCCGGCTCCTGGAGAAAC
GGCAGCTCCCAGCTTGCCGGGAGGGCCTGCATCCTCCTCGAACACGTATA
GAATCTTGTCGTCCACCTACGCTGCCTGGTCCTCGGGCGAGACGATGGCC
AGGGACGGTGGCATCCTCTCCTTCCTGCCCCCAGGCATCCCCACGGACAC
GAGGGGGATCGAGGTGGCCCTAGGGGGGGGTGAAGGTGGGAGCATGCCAC
TGCGGGCGGCGGGGGTGGCGGGCACGAGTGAGAAGCGGAAAAAGAAGGTG
TTGATCCTCATGTCCGATACCGGGGGCGGGCACCGGGCGTCGGCCCAGGC
TCTGGAGGCCGCTTTCAACGAGCTCTTTCCCAACCAGGTCGAGTGCACGA
CCGTGGATATCTGGACGGATTTCGCTCCCTGGCCCTACAATCGATTCGTG
CCGGCCTATCAGTTCATGGCCAAGAACCCCCTCTACTGGAAGGCGTTCTG
GGAGTACGGGAAATTTCCCCCTTCCAAATGGGGCACGGAGGAGCTGTCGA
ACCTGGCTTGTCACCACCGGTTCAAGGACTGCATTGAGGACCAAGACCCG
GACCTGATCATCTCGGTGCACCCCCTCTGTCAGGATGTGCCCCTGCGGGT
TTTGAACACGCTGGGCCGCGGGAAGCGTCAAATTCCTTTCGTGACCGTCG
TCACCGACCTGGGAGGCGCGCACCCGACCTGGTTTCACAAGGAGGTGGAC
CTTTGCTTCGTTCCCTCGGACCCAGTTCGAAAGATTGCCTTGGCCATGGG
GTTGAAACACGATCAAATCCGACAGCACGGACTGCCGATCCGGCCAGGCT
TTTGGAAGGCGGGGAAGGATAAAGGGCAGTTGCGCAGGGAGCTGGGTTTG
GCCACGGGGGTGAGGACGGCGCTGGTTGTGGGGGGTGGGGACGGGATAGG
AAACCTGTTGGAGATCACGGAGAGCCTTGCCTCGGCGCTGGCGGCTGGGG
GATCCGGGGGGAAGAAGAGCCAGGTGGTGGTGGTGTGTGGGAAGAACGAG
GAAATGCGGCGGAATTTGGAGCGGCGGACGTGGCCCCCGAGCGTGAATGT
GGTGGTCAAGGGGTTTGTAAATAATATGGATGCTTGGATGGGCGCGTCGG
ATTGCATCGTCACCAAGGCCGGGCCAGGGACGATTGCGGAGGCGAGTACT
CGGGGGCTGCCCGTGATGCTTTTTAACTACCTGCCCGGACAGGAAGAAGG
GAACGTGCCCTTTGTGGTGGAAAATGGCTTTGGTGATTACAAAAAGGACC
CGAAGGCGATCGGGGAGGTGGTGTCGGGGTGGCTGATGAGCGAGGAGGTG
CGGGAGAAGATGAGCAAGAAGGCCCTGGAAGCTAGTCGCCCGAGCAGCAC
TACCAACATTGCCAAGGAGATTGGCGATTTGCTGTTTGGCAATTGGCAGC
TGCCGCTACGGAAAGACACGGAGGATAAATTCAATATTTTGTTGAAAAAA
TTGATGGAGCCCGTGACGATGTGA

Synonyms

Publications