rna576, rna576 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna576
Unique Name	rna576
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1637
Alignment location	CM002455.1:1435432..1437770 +

Link to JBrowse

Properties


Property Name	Value
Product	spindle assembly abnormal protein 6
Orig transcript id	gnl\|cribi\|Naga_100193g3.5876.mrna
Orig protein id	gnl\|cribi\|Naga_100193g3.5876
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:1435432..1437770 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100193g3	gene554	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna576	rna576-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30093.1	cds576	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:1435432..1437770+
coding sequence from alignment at CM002455.1:1435432..1437770+

mRNA sequence

>rna576 ID=rna576|Name=rna576|organism=Nannochloropsis gaditana|type=mRNA|length=1637bp
TTCAAAGCCTATCAGTGGCGCGATGATGTTTTACGAAAACCATCATGGTT
CACAACGTCCCAAGAATCCCCTCAAACAAGGAGAAGAGGCATAGAAAGAG
AACGTGCGCAATAGAGCACACAAGGGTATATGCTGAAACCTTCCCTTCCG
CCGAGGATGCCTGCACTCCCTCCTACAATCGTTCCACCCGCCAGCTCGAG
CCAGCGTTCGTTACCGCCTCCCCTCCCTCGTAGCAAGAGAAGAAGAATGG
CAAGAGGTCGGACCTTCAACTCCCCATTTCTTCTCCTGTCACTCAAGCTC
CTATGCCTGGTCCTCCTCGCCGTGGACGGTGCTGGTGCCTCCGCGCGCAG
CCAAAGTGACTACTATACCCGTTTGGGCCTGAAACGCGATGCCAACAAAA
AAGATATAGCTAGAGCTTACAGGCGCATGGCGGTCAAAACTCATCCAGAT
AAAGTGTCGCCAGACAAACGATCAGAGGCCGAGAAAAAGTTCAAGTCCAT
CACTGAAGCGTACGAAGTGCTCAGTGATCCCAAGAAACGAAAAATTTACG
ATACCTACGGCGAAGAGGGCGTGCGGGCCTCAGCGGGCGGCGTTCCCCCT
CAGGGTCCAGGAGGTTATGGTTTCCCCGGCGGAGCAAGTCGGGCTAGAGG
GTTTAATGGGGGTGACGGCGGGACTCGATTTTTCTTCAACGGCAGGGAGT
ACCGAGGCGGGCCCAGCCCTTTCGACGGGGGAGGAGGGGGAGGAGGGGGT
GGAGGGGGCTTTGCAGCGGAGGATGTTTTTGAGCGCTTTTTTGGAGACAT
GTTTTTCGGCCCGGGCGCCAATGCACGGCCGGATCCGATGGGTGGTTCTC
GCGGTTTCCAAGGGTACCAGCAACAACAACGACGATGGCAGCAGCAGCAA
CAACAGTCTGCGAAGCAGGAAAAAATGGTGTGTAGTCTAGAGGAGCTCTA
CCGTGGAACCACGAGGCATGTGACGGTGCACTCAGGGAGGAGAGAAAAAA
CCTTCCGCGTGGAAATAAAGCGTGGCTGGAAGGCCGGGACCAAGATCCAA
TTCGCCGCCGCTCCCTCCAGCCCTCCTTCCTTCCCTCCCTCGTCCCCTTT
CCCACCCGTGGTTTTCATCCTGGTGGAGGCACGCCACCGGTATTTTACCC
GGCGTGGCGACGACCTGGTCTGGAGGAAAGGATTGAGCACCGCGCAGGCC
GCCAAGGATATCGTCGTCAAGGTCCCCCTCTTGAACGGAAGAGAGGTGAA
GGTGAAAGTGGAAAGAGGGAGAGTGCCTCGGGATGGGAGCCTCCTTCGAC
TGCGGGAAAAAGGAGGGGGTATGCCGAAAAAGGGTGGAGGCTTTGGTGAC
CTGATCGTGGAGCTCTATGTGCAAAAATAGGCAGAGCGTTGCCATTTGGT
GGAAAAACGGACGAGAAAGATGGAAAGGGCGCGATACATACAGAGAAGGC
CCACTTGTGCAAAGCATGCACAAGTCAAAGAATGCTGCATAGCTGCTTTG
TCAACCTATTATGCCCAGGCAATCTCGTTGGATATCGATAGTGATATTTA
ATTTGGCACTACTTGATCTCGGCCGAACGGATATTTCTAATGACCTCACT
GACATCGAAAGTAAATAAATGAAGATATTGTACTAGT

protein sequence of rna576

>rna576-protein ID=rna576-protein|Name=rna576|organism=Nannochloropsis gaditana|type=polypeptide|length=661bp
MAPQSTSPRLHDSRGRGTCRSSNVVFERANPLFEGTLDIEVCRQGMQGEQ
NQSQELSREMVPLTLRVLTGTANSTYTTSNQVGNYSRSEHVLRIEITQYD
NPTEEKAGDEDAAASYFLYTLDVSESEYPILKRDQSLLVDFADFPDQFIG
LVAQCRVSHSSTNASQRSSAASCDTIPAEVPPPYRARLTLATSSALSTSP
SSSAVFAIVEATPFKELSHLSLAFCPPTDHHLKAFLATRLQHLTFLHAAA
VRTHHSVSHILSEEQARNLSLTTALSSLRREKEEETGTLKRTHMEAMTTA
LAEHSREKDQLISRHESQMNALRKRCEETERRRMELSEARHANEAKLREV
TRRVEQLTDRLAESDKNTRTLVEEKKGLEDTLRNAEKHWDEAKLREEGLL
QKLKGQDDVLERTKALQLVAEGARRRMEEALELYKNNALALQEKLEVSVG
EIQKGNMIIQKLQTETQTLRGKIKTKNEVLKKQEALLVEGRRGQDAGVHR
LSAVVQENGRLTQELGALKTALEESRRENESNQQVITWLNKEINDLQLGR
GSHGLMHATVGGMEGPKYGRAKQHNSSTAASVATFIPSYNTPAKYRGDTI
SQATPKSPVESNAVDKDPHQSKSPLPRHSPSLGVNVSASSMSTAASTHYL
DVLGLSDPYQH

mRNA from alignment at CM002455.1:1435432..1437770+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna576 ID=rna576|Name=rna576|organism=Nannochloropsis gaditana|type=mRNA|length=2339bp|location=Sequence derived from alignment at CM002455.1:1435432..1437770+ (Nannochloropsis gaditana)
TCCCATGATTCCTACAGGCTTATTAAACTAGCATATTTATTTATTCGAGG
AAAGCCTACCATTCATCAAGTCGTGAAGATGGCTCCGCAGTCCACTTCGC
CGCGCCTACATGATAGCAGGGGACGGGGCACATGCAGAAGCAGCAATGTT
GTCTTTGAACGCGCAAACCCCCTATTCGAAGGCACTTTGGACATAGAAGT
GTGCCGTCAAGGCATGCAAGGAGAGCAAAATCAGTCACAGGAGCTTTCCA
GGGAGGTATGAAGCCATGCCCGAGTTAGGCGCCTTCTATAAACCGCatgt
ctcttcttcttctcccgcatCTATATTTTTATAATTTAATGTCTGCCATG
CACAATGTTTGTTGCGCCTTTGTCAGGAGCTCATTAGGCCCCTCTACCtg
tcactttcctccccaccttatCTGTCCGTACAGATGGTACCTCTCACCCT
CCGGGTCCTGACCGGCACTGCAAACTCCACCTACACAACATCTAATCAAG
TTGGCAACTACAGCCGGAGCGAGCATGTGCTACGTATTGAAATAACCCAG
TACGACAACCCAACCGAGGAGAAAGccggcgacgaggacgctGCCGCCTC
CTACTTCCTCTACACGCTGGACGTATCCGAGAGCGAGTACCCGATTTTAA
AGCGGGATCAGAGCCTGCTGGTCGACTTCGCCGATTTTCCCGACCAATTC
ATTGGCTTGGTCGCTCAGTGTCGGGTTTCCCATTCCAGCACCAACGCCTC
CCAACGTTCATCTGCCGCATCTTGCGACACAATCCCAGCTGAggtccccc
ctccctaccgcGCCCGTCTCACTCTGGCAACCTCTTCCGCCTTGTcgact
tctccttcttcttctgcggTCTTCGCCATCGTGGAAGCGACGCCGTTCAA
GGagctttcccacctctccctcgcgtTTTGTCCTCCCACTGACCACCACT
TGAAGGCTTTCCTGGCCACTCGCCTGCAGCACTTGaccttcctccatgcc
gcGGCAGTGCGCACCCACCACTCCGTCTCCCACATTCTCTCGGAGGAACA
GGCCCGGAACCTCTCCTTGACCACAGCTCTCTCGAGCTTGAGacgtgaga
aggaagaagaaacagGCACCCTGAAGAGGACGCACATGGAGGCCATGACC
ACTGCCCTGGCTGAGCATAGCCGCGAGAAGGATCAACTGATCTCCAGGCA
TGAGTCTCAAATGAATGCCTTGCGGAAACGGTGCGAGGAGACGGAGCGCC
GGCGGATGGAGCTGTCGGAAGCACGGCATGCCAACGAGGCGAAGCTGCGA
GAGGTGACGCGACGGGTTGAACAACTCACGGACCGTCTGGCAGAATCAGA
CAAGAATACCCGGACAttggtggaagagaagaaaggactGGAAGATACCC
TGAGAAATGCGGAGAAGCATTGGGACGAGGCGAAGCtccgagaggaagga
ctcCTGCAAAAATTGAAGGGTCAAGATGATGTGTTGGAGCGGACCAAAGC
TCTGCAGttggtggcggagggcgctcggagaaggatggaggaggccctgg
aaCTCTACAAAAACAATGCATTGGCATTGCAAGAGAAGCTGGAGGTCTCT
GTTGGGGAAATTCAAAAAGGGAACATGATTATTCAAAAACTTCAAACTGA
AACCCAGACACTCCGAGGGAAAATCAAAACCAAAAATGAAGTGCTCAAGA
AGCAAGAAGCTTTGTTGGTGGAGGGACGTCGGGGCCAAGATGCAGGCGTG
CACCGCCTAAGTGCAGTCGTACAGGAAAACGGGCGTCTGACCCAAGAATT
AGGCGCCTTGAAGACTGCCTTGGAAGAAAGCCGGCGAGAGAACGAGTCGA
ACCAACAAGTCATCACTTGGCTCAACAAGGAAATCAACGACTTGCAGCTG
GGGCGAGGGAGTCATGGGCTCATGCATGCAACCGTTGGGGGCATGGAAGG
TCCCAAGTATGGAAGAGCGAAACAGCACAATTCTTCAACAGCGGCCTCAG
TAGCGACATTCATACCTTCATACAATACGCCTGCCAAGTATCGAGGGGAT
ACTATCTCACAGGCCACACCTAAGTCGCCAGTCGAATCAAATGCAGTTGA
CAAGGACCCACATCAGTCAAAGAGTCCACTACCAAGACACTCGCCAAGTC
TGGGAGTGAACGTCTCAGCTTCTTCTATGTCTACTGCAGCCTCAACACAT
TATCTGGATGTGCTGGGACTCTCCGATCCCTACCAGCACTAAAAACATTA
CAGTAAAAagatgaaagaaaaagagtGTGAAATGTGTACATGTCAGCGGA
GTACAAACTGGattggaaagaaaaaaagtaaATTTTATT

Coding sequence (CDS) from alignment at CM002455.1:1435432..1437770+

>rna576 ID=rna576|Name=rna576|organism=Nannochloropsis gaditana|type=CDS|length=3972bp|location=Sequence derived from alignment at CM002455.1:1435432..1437770+ (Nannochloropsis gaditana)
ATGGCTCCGCAGTCCACTTCGCCGCGCCTACATGATAGCAGGGGACGGGG
CACATGCAGAAGCAGCAATGTTGTCTTTGAACGCGCAAACCCCCTATTCG
AAGGCACTTTGGACATAGAAGTGTGCCGTCAAGGCATGCAAGGAGAGCAA
AATCAGTCACAGGAGCTTTCCAGGGAGATGGTACCTCTCACCCTCCGGGT
CCTGACCGGCACTGCAAACTCCACCTACACAACATCTAATCAAGTTGGCA
ACTACAGCCGGAGCGAGCATGTGCTACGTATTGAAATAACCCAGTACGAC
AACCCAACCGAGGAGAAAGccggcgacgaggacgctGCCGCCTCCTACTT
CCTCTACACGCTGGACGTATCCGAGAGCGAGTACCCGATTTTAAAGCGGG
ATCAGAGCCTGCTGGTCGACTTCGCCGATTTTCCCGACCAATTCATTGGC
TTGGTCGCTCAGTGTCGGGTTTCCCATTCCAGCACCAACGCCTCCCAACG
TTCATCTGCCGCATCTTGCGACACAATCCCAGCTGAggtcccccctccct
accgcGCCCGTCTCACTCTGGCAACCTCTTCCGCCTTGTcgacttctcct
tcttcttctgcggTCTTCGCCATCGTGGAAGCGACGCCGTTCAAGGagct
ttcccacctctccctcgcgtTTTGTCCTCCCACTGACCACCACTTGAAGG
CTTTCCTGGCCACTCGCCTGCAGCACTTGaccttcctccatgccgcGGCA
GTGCGCACCCACCACTCCGTCTCCCACATTCTCTCGGAGGAACAGGCCCG
GAACCTCTCCTTGACCACAGCTCTCTCGAGCTTGAGacgtgagaaggaag
aagaaacagGCACCCTGAAGAGGACGCACATGGAGGCCATGACCACTGCC
CTGGCTGAGCATAGCCGCGAGAAGGATCAACTGATCTCCAGGCATGAGTC
TCAAATGAATGCCTTGCGGAAACGGTGCGAGGAGACGGAGCGCCGGCGGA
TGGAGCTGTCGGAAGCACGGCATGCCAACGAGGCGAAGCTGCGAGAGGTG
ACGCGACGGGTTGAACAACTCACGGACCGTCTGGCAGAATCAGACAAGAA
TACCCGGACAttggtggaagagaagaaaggactGGAAGATACCCTGAGAA
ATGCGGAGAAGCATTGGGACGAGGCGAAGCtccgagaggaaggactcCTG
CAAAAATTGAAGGGTCAAGATGATGTGTTGGAGCGGACCAAAGCTCTGCA
GttggtggcggagggcgctcggagaaggatggaggaggccctggaaCTCT
ACAAAAACAATGCATTGGCATTGCAAGAGAAGCTGGAGGTCTCTGTTGGG
GAAATTCAAAAAGGGAACATGATTATTCAAAAACTTCAAACTGAAACCCA
GACACTCCGAGGGAAAATCAAAACCAAAAATGAAGTGCTCAAGAAGCAAG
AAGCTTTGTTGGTGGAGGGACGTCGGGGCCAAGATGCAGGCGTGCACCGC
CTAAGTGCAGTCGTACAGGAAAACGGGCGTCTGACCCAAGAATTAGGCGC
CTTGAAGACTGCCTTGGAAGAAAGCCGGCGAGAGAACGAGTCGAACCAAC
AAGTCATCACTTGGCTCAACAAGGAAATCAACGACTTGCAGCTGGGGCGA
GGGAGTCATGGGCTCATGCATGCAACCGTTGGGGGCATGGAAGGTCCCAA
GTATGGAAGAGCGAAACAGCACAATTCTTCAACAGCGGCCTCAGTAGCGA
CATTCATACCTTCATACAATACGCCTGCCAAGTATCGAGGGGATACTATC
TCACAGGCCACACCTAAGTCGCCAGTCGAATCAAATGCAGTTGACAAGGA
CCCACATCAGTCAAAGAGTCCACTACCAAGACACTCGCCAAGTCTGGGAG
TGAACGTCTCAGCTTCTTCTATGTCTACTGCAGCCTCAACACATTATCTG
GATGTGCTGGGACTCTCCGATCCCTACCAGCACTAAATGGCTCCGCAGTC
CACTTCGCCGCGCCTACATGATAGCAGGGGACGGGGCACATGCAGAAGCA
GCAATGTTGTCTTTGAACGCGCAAACCCCCTATTCGAAGGCACTTTGGAC
ATAGAAGTGTGCCGTCAAGGCATGCAAGGAGAGCAAAATCAGTCACAGGA
GCTTTCCAGGGAGATGGTACCTCTCACCCTCCGGGTCCTGACCGGCACTG
CAAACTCCACCTACACAACATCTAATCAAGTTGGCAACTACAGCCGGAGC
GAGCATGTGCTACGTATTGAAATAACCCAGTACGACAACCCAACCGAGGA
GAAAGccggcgacgaggacgctGCCGCCTCCTACTTCCTCTACACGCTGG
ACGTATCCGAGAGCGAGTACCCGATTTTAAAGCGGGATCAGAGCCTGCTG
GTCGACTTCGCCGATTTTCCCGACCAATTCATTGGCTTGGTCGCTCAGTG
TCGGGTTTCCCATTCCAGCACCAACGCCTCCCAACGTTCATCTGCCGCAT
CTTGCGACACAATCCCAGCTGAggtcccccctccctaccgcGCCCGTCTC
ACTCTGGCAACCTCTTCCGCCTTGTcgacttctccttcttcttctgcggT
CTTCGCCATCGTGGAAGCGACGCCGTTCAAGGagctttcccacctctccc
tcgcgtTTTGTCCTCCCACTGACCACCACTTGAAGGCTTTCCTGGCCACT
CGCCTGCAGCACTTGaccttcctccatgccgcGGCAGTGCGCACCCACCA
CTCCGTCTCCCACATTCTCTCGGAGGAACAGGCCCGGAACCTCTCCTTGA
CCACAGCTCTCTCGAGCTTGAGacgtgagaaggaagaagaaacagGCACC
CTGAAGAGGACGCACATGGAGGCCATGACCACTGCCCTGGCTGAGCATAG
CCGCGAGAAGGATCAACTGATCTCCAGGCATGAGTCTCAAATGAATGCCT
TGCGGAAACGGTGCGAGGAGACGGAGCGCCGGCGGATGGAGCTGTCGGAA
GCACGGCATGCCAACGAGGCGAAGCTGCGAGAGGTGACGCGACGGGTTGA
ACAACTCACGGACCGTCTGGCAGAATCAGACAAGAATACCCGGACAttgg
tggaagagaagaaaggactGGAAGATACCCTGAGAAATGCGGAGAAGCAT
TGGGACGAGGCGAAGCtccgagaggaaggactcCTGCAAAAATTGAAGGG
TCAAGATGATGTGTTGGAGCGGACCAAAGCTCTGCAGttggtggcggagg
gcgctcggagaaggatggaggaggccctggaaCTCTACAAAAACAATGCA
TTGGCATTGCAAGAGAAGCTGGAGGTCTCTGTTGGGGAAATTCAAAAAGG
GAACATGATTATTCAAAAACTTCAAACTGAAACCCAGACACTCCGAGGGA
AAATCAAAACCAAAAATGAAGTGCTCAAGAAGCAAGAAGCTTTGTTGGTG
GAGGGACGTCGGGGCCAAGATGCAGGCGTGCACCGCCTAAGTGCAGTCGT
ACAGGAAAACGGGCGTCTGACCCAAGAATTAGGCGCCTTGAAGACTGCCT
TGGAAGAAAGCCGGCGAGAGAACGAGTCGAACCAACAAGTCATCACTTGG
CTCAACAAGGAAATCAACGACTTGCAGCTGGGGCGAGGGAGTCATGGGCT
CATGCATGCAACCGTTGGGGGCATGGAAGGTCCCAAGTATGGAAGAGCGA
AACAGCACAATTCTTCAACAGCGGCCTCAGTAGCGACATTCATACCTTCA
TACAATACGCCTGCCAAGTATCGAGGGGATACTATCTCACAGGCCACACC
TAAGTCGCCAGTCGAATCAAATGCAGTTGACAAGGACCCACATCAGTCAA
AGAGTCCACTACCAAGACACTCGCCAAGTCTGGGAGTGAACGTCTCAGCT
TCTTCTATGTCTACTGCAGCCTCAACACATTATCTGGATGTGCTGGGACT
CTCCGATCCCTACCAGCACTAA

Synonyms

Publications