rna5758, rna5758 (mRNA) Nannochloropsis gaditana

Overview
Namerna5758
Unique Namerna5758
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length483
Alignment locationCM002466.1:768229..769705 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100086g2.3843.mrna
Orig protein idgnl|cribi|Naga_100086g2.3843
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:768229..769705 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100086g2gene5563Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24943.1cds5743Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5758rna5758-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5758 ID=rna5758|Name=rna5758|organism=Nannochloropsis gaditana|type=mRNA|length=483bp
ATGTGTGGGGTGGAACGAGCAGGAAGGCCCGCGACGGGACCTTGCGTTCC
CTCGTGCTGTGTTTCCTGCAATTTATTTCGGGCTTTTTGCATGATCTGCT
TGGAGGAGGATCGCCCCGTGGAAGCGTGGAAGCTGTACATTCCTGTCGGC
TGCCGGAAAGGTGAAGACGGAGAGGTGGAGCTGCTTCCGCTGCTTGATTC
TCTAGGTCATACGAAAACCACCAATTTTTTCAGTCGCACTTTCAAAATTA
ACAAGATTTTGCTGCCGTGTAGCTCACGCGTGTACAGAGGCGTTCTTGGT
CAGATAATTGTGGATGAGGCGTCGGACAACCGGGACGAGAGTAACGAGAT
GGTAGGTGCACCTTCTTCGTCCGATTGCCTCCATCCCCCTCTTCGACCGC
GCTCCTGTACTCAAACGCCTGGGCGCACGCAAATGTACGTCTGTGAGGGC
TTGCACCGGTGTATAACGGTAGCCCGGTGTTGA
back to top

protein sequence of rna5758

>rna5758-protein ID=rna5758-protein|Name=rna5758|organism=Nannochloropsis gaditana|type=polypeptide|length=440bp
MVQGMRSLPNYQNVTFYFFIFFLTRPIRAIQEEVVHIRLADGVDRRSLQS
TAEEPPTIPPVDTPSSTSTPLPAPARPSGPRLLREMDGESFALTKDGHNY
NVKMFQTVTRRRPSENTPVVLGVWDKWEMVNGKEEAEDVNIACKEAQVGE
GHGVSMSFRMLYRHGDPCPHNTSVLQSVTVDFLCLAPSFTTVPGLDSGAS
AGKPASVSDMDGSSHVTTWEEEADGQTSLGTRPGVAKDMGQGLNFRLMDA
VETPPCHHRLTLDSPVPCAVLARDMVDVAPPSHAGVQAGGAGKGRKGKRK
LPKGQKKRNGRRLYKRLLVVAGELCLALRGPMRRAGSSVKEQCTFVARAV
RKRFWKAISVPLASLLALPSTCWRLVSERGSKRREGGLEALVEEMRALRL
LLTTFLGESRAEGGTCCPYPGRGECRNGKRERDHEGGEYA
back to top

mRNA from alignment at CM002466.1:768229..769705-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5758 ID=rna5758|Name=rna5758|organism=Nannochloropsis gaditana|type=mRNA|length=1477bp|location=Sequence derived from alignment at CM002466.1:768229..769705- (Nannochloropsis gaditana)
GCGGCAGGTGACTCTGGGGCTTATTGCCGGTACTGTGGCAGCATTTCACC
AATGCGGCTGGCCACCTGTTCCCGCTTTTTCGAATTTTGACCTACTTACT
GAATATGGTCCAAGGGATGCGCAGCTTACCTAATTACCAAAACGTAACCT
TTTATTTTTTTATCTTCTTCTTGACAAGACCCATCCGGGCTATTCAAGAA
GAAGTCGTTCATATCCGTCTGGCCGATGGTGTCGATCGACGGTCTCTACA
AAGTACAGCAGAAGAGCCTCCGACGATCCCTCCAGTGGACACCCCTTCTT
CCACCTCCACGCCTCTTCCAGCACCCGCTAGGCCGTCTGGCCCCCGATTG
CTGCGTGAAATGGACGGTGAATCTTTCGCATTGACGAAAGATGGACACAA
TTACAACGTCAAGATGTTTCAGACCGTGACGCGAAGACGGCCCTCGGAAA
ACACCCCAGTAGTCCTGGGCGTATGGGACAAGTGGGAAATGGTGAACGGG
AAGGAAGAGGCTGAAGATGTGAATATAGCTTGCAAAGAGGCTCAAGTTGG
TGAAGGGCATGGGGTCTCGATGTCGTTTCGCATGCTATACCGGCATGGTG
ACCCATGCCCGCACAATACAAGTGTCCTCCAAAGCGTCACCGTCGACTTC
CTCTGTCTCGCGCCGTCATTCACCACCGTGCCAGGGCTGGACTCCGGAGC
CAGTGCCGGAAAGCCCGCGTCGGTCTCGGACATGGATGGCAGCAGCCATG
TCACCACGTGGGAAGAGGAAGCGGACGGCCAAACTTCGCTGGGGACCCGT
CCAGGTGTGGCGAAGGACATGGGCCAAGGTTTGAATTTCCGTTTGATGGA
CGCCGTTGAGACCCCTCCATGCCACCACCGTCTCACATTGGACTCTCCTG
TGCCGTGTGCCGTCTTGGCACGGGACATGGTGGATGTGGCTCCTCCGTCG
CACGCCGGCGTGCAGGCAGGCGGGGCAGGGAAAGGGAGGAAGGGAAAGCG
GAAACTTCCCAAGGGCCAGAAAAAGCGGAACGGGCGACGGCTCTATAAGA
GGCTGCTAGTAGTCGCAGGAGAGCTATGTCTGGCGCTTCGGGGGCCAATG
AGGAGGGCGGGATCGTCAGTGAAAGAACAGTGTACGTTCGTGGCGAGGGC
AGTCAGGAAACGATTCTGGAAAGCGATCTCCGTCCCCCTCGCGTCCCTCC
TCGCCCTCCCTTCCACCTGCTGGCGGCTTGTCTCGGAACGAGGGTCTAAG
CGAAGGGAAGGGGGTCTGGAGGCGCTGGTGGAGGAGATGAGGGCCCTACG
ATTGTTACTGACGACCTTTCTGGGGGAGAGCCGGGCGGAGGGAGGGACAT
GCTGCCCGTACCCGGGGCGAGGGGAATGCAGAAATGGGAAACGGGAGAGA
GATCACGAAGGTGGGGAGTATGCCTGATGCTGAGCGGTGTGGTCGTCGTC
CTAAAGTAAGAGTCGTGGCAGGTAAGG
back to top

Coding sequence (CDS) from alignment at CM002466.1:768229..769705-

>rna5758 ID=rna5758|Name=rna5758|organism=Nannochloropsis gaditana|type=CDS|length=1323bp|location=Sequence derived from alignment at CM002466.1:768229..769705- (Nannochloropsis gaditana)
ATGGTCCAAGGGATGCGCAGCTTACCTAATTACCAAAACGTAACCTTTTA
TTTTTTTATCTTCTTCTTGACAAGACCCATCCGGGCTATTCAAGAAGAAG
TCGTTCATATCCGTCTGGCCGATGGTGTCGATCGACGGTCTCTACAAAGT
ACAGCAGAAGAGCCTCCGACGATCCCTCCAGTGGACACCCCTTCTTCCAC
CTCCACGCCTCTTCCAGCACCCGCTAGGCCGTCTGGCCCCCGATTGCTGC
GTGAAATGGACGGTGAATCTTTCGCATTGACGAAAGATGGACACAATTAC
AACGTCAAGATGTTTCAGACCGTGACGCGAAGACGGCCCTCGGAAAACAC
CCCAGTAGTCCTGGGCGTATGGGACAAGTGGGAAATGGTGAACGGGAAGG
AAGAGGCTGAAGATGTGAATATAGCTTGCAAAGAGGCTCAAGTTGGTGAA
GGGCATGGGGTCTCGATGTCGTTTCGCATGCTATACCGGCATGGTGACCC
ATGCCCGCACAATACAAGTGTCCTCCAAAGCGTCACCGTCGACTTCCTCT
GTCTCGCGCCGTCATTCACCACCGTGCCAGGGCTGGACTCCGGAGCCAGT
GCCGGAAAGCCCGCGTCGGTCTCGGACATGGATGGCAGCAGCCATGTCAC
CACGTGGGAAGAGGAAGCGGACGGCCAAACTTCGCTGGGGACCCGTCCAG
GTGTGGCGAAGGACATGGGCCAAGGTTTGAATTTCCGTTTGATGGACGCC
GTTGAGACCCCTCCATGCCACCACCGTCTCACATTGGACTCTCCTGTGCC
GTGTGCCGTCTTGGCACGGGACATGGTGGATGTGGCTCCTCCGTCGCACG
CCGGCGTGCAGGCAGGCGGGGCAGGGAAAGGGAGGAAGGGAAAGCGGAAA
CTTCCCAAGGGCCAGAAAAAGCGGAACGGGCGACGGCTCTATAAGAGGCT
GCTAGTAGTCGCAGGAGAGCTATGTCTGGCGCTTCGGGGGCCAATGAGGA
GGGCGGGATCGTCAGTGAAAGAACAGTGTACGTTCGTGGCGAGGGCAGTC
AGGAAACGATTCTGGAAAGCGATCTCCGTCCCCCTCGCGTCCCTCCTCGC
CCTCCCTTCCACCTGCTGGCGGCTTGTCTCGGAACGAGGGTCTAAGCGAA
GGGAAGGGGGTCTGGAGGCGCTGGTGGAGGAGATGAGGGCCCTACGATTG
TTACTGACGACCTTTCTGGGGGAGAGCCGGGCGGAGGGAGGGACATGCTG
CCCGTACCCGGGGCGAGGGGAATGCAGAAATGGGAAACGGGAGAGAGATC
ACGAAGGTGGGGAGTATGCCTGA
back to top
Synonyms
Publications