rna5755, rna5755 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5755
Unique Name	rna5755
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	921
Alignment location	CM002466.1:764204..766179 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100086g5.3832.mrna
Orig protein id	gnl\|cribi\|Naga_100086g5.3832
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:764204..766179 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100086g5	gene5560	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5755	rna5755-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24932.1	cds5740	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:764204..766179-
coding sequence from alignment at CM002466.1:764204..766179-

mRNA sequence

>rna5755 ID=rna5755|Name=rna5755|organism=Nannochloropsis gaditana|type=mRNA|length=921bp
GAACGCGGGCGACCGGCCGTGATTTGAGCGTTAGGAAGACGGTGGATGTG
TCGGGAGGGTATGCATGGGTGGAAATTATTTTGGTGGTGCTGCATTGTTT
TCGTGACCCCTTTTCCACGCTCACCACTATCATCAACTCGCTCTGACCTT
CAGCACAGAACCTCAATTGCGGCAGCAATGGACACACTCTTGGGCATAAA
AGGAGATGGCTTCGTACTCATAGCTGCCGATGCATCAGCTGCTCGCTCTA
TTCTCGTCTTCAAAACAGACCAAGATAAGATAGCCGCTCTAGACAGTCAC
AAGCTCCTGGCTGCCGCAGGCCCCAATGCTGATTGCAGCAACCTGACTGA
ATACGTACAAAAAAATATGGCTTTGTACGAGTTCAACAACGACTTAAAGC
TTGGTACGCATGCAGCTGCTAACTTTATCAGGCGCACGTTGGCGACAGCT
TTGCGGAAGGGGCCTTACCAAACAAATTTGCTCCTAGGCGGCTTCGACGA
GAAAGACGGGGCTGCTCTCTACTTTCTCGACTATCTAGGGAGTATGCAAA
AAGTGAATTTTGGTGCTCAAGGTTATGCTTCGAATTTCACCTTGTCGATT
TTCGACAGGGAGTACAGGGAGGGCATGACGCTGCCCGAGGCGGAGGTCGT
CTTGGAGAAGGCGAAAAAGGAGTTGGCGGTGCGTTTCCTAATCTCCCAAC
CCAAGTGGATCATGAAGGTGGTGGACAAGGACGGCGTGCGCACGTTGTAG
GAGGTGGCGTCGGCCGAGGGTGGGAAAGTACATAAGAAGGGTCGCGTGCG
CGTGGAGGTGACGGGCAACACAGCAGGATAGGAAGGGGAAGATTGAGGTG
GCGTTGGTGGGCAGGTGCCACTTCTAAAAAAAAATAACGGCGGCAACAAA
TTCGTCGCCCAATGAAAGGCT

protein sequence of rna5755

>rna5755-protein ID=rna5755-protein|Name=rna5755|organism=Nannochloropsis gaditana|type=polypeptide|length=509bp
MAVVSNKVGGSKRKVTSPPSAITARTNPKKSNTLSKTDEAQTTADKLTLP
PSRVDATQATRAVEALLQHNARHQALVASKKSKQDLLASEAGDYILIQIA
LAKIPERVSPKPVPLSLPHPLHGSGGDDDEDHAVCLIVKESDKGKVQRAL
NAMKMDGVREVVGLQELRTDYKEFQERRQLRDAFDLFLVDDRILPLLGKA
LGKTFFSKKKHPVALKLGGLLSSNPQAMATVGKRIIAAQQRTHLYRNHGN
CLSVKVAKTSFRPAEAVANVLAGIEAAVEATPGKWKNVMAISVKTSSSVA
LPLYQRLPQYLIKKPGALGIGQAVHAQLEGNEPGEEGEEGEGKRALLTVK
ALENRGKKRGPPVSEAKESSAKKTGHKGSSLAPRTDAAKSSQRGLPLDPK
SKLSGGEMKTSVVTKGAIAESGAAKVVGDASGRPNRTGETVAAAKKRARQ
EDGAAAVALLASRAQTGGKIRGGKAEVESLETGPVPRKGKKVVVAESEGK
GKAKKKNRI

mRNA from alignment at CM002466.1:764204..766179-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5755 ID=rna5755|Name=rna5755|organism=Nannochloropsis gaditana|type=mRNA|length=1976bp|location=Sequence derived from alignment at CM002466.1:764204..766179- (Nannochloropsis gaditana)
TCACCATGGCTGTCGTTTCCAATAAGGTGGGCGGCAGCAAGCGGAAAGTG
ACCTCCCCACCCTCCGCCATTACTGCTCGCACAAACCCGAAAAAAAGCAA
CACGTTGAGCAAAACAGATGAAGCTCAAACGACGGCCGACAAGCTTACTT
TGCCTCCAAGCCGCGTCGATGCCACTCAGGCCACTCGTGCCGTGGAGGCA
TTACTGCAACATAATGCTCGGCACCAGGCTCTTGTAGCAAGCAAAAAATC
CAAACAGGACCTCTTAGCGTCCGAGGCAGGCGATTACATATTGATACAGA
TAGCGCTTGCCAAAATTCCTGAACGTGTGAGTCCCAAGCCGGTGCCTTTA
TCATTGCCCCACCCCCTCCACGGTAGCGGCGGCGACGACGATGAAGACCA
TGCCGTGTGCTTGATAGTAAAAGAATCGGACAAGGGTAAAGTTCAACGCG
CGTTGAATGCGATGAAAATGGACGGCGTGCGTGAAGTCGTGGGATTGCAG
GAGCTGAGAACGGACTATAAGGAGTTCCAAGAGCGGCGACAGCTCCGGGA
CGGTAAGAGGCGCCCACCGTGTGAAAATTGGAAGGCAATACGTGCGATGG
CGAAGCACGGGGGTTGAGTTCGGAAGGCAGACTTTTGTGCGCCATACATG
TCTGAGTATTCCAACGCAGTATTCGACCCCCGCCCCCCCCCCCCCGATGA
TGACTAGTACATGCACCACACCGAAATGGTCCTCGGACCCGACTGTGGAT
ATTTGTTACTCATACACACCAATTTGACTTCTGAGGGAGCCAGGCCAGGG
TTTGGCCCCCACGTTCATTCTCTGTTCTTTCCCACTCACGTATTCCCCTC
TCCCCCCCCTAAAAGCCTTCGACTTGTTCCTGGTGGATGACCGCATCTTG
CCCCTCCTGGGAAAGGCGCTCGGCAAGACTTTCTTTTCGAAGAAGAAACA
TCCCGTGGCCCTCAAACTTGGTGGCCTGTTGAGCAGCAACCCGCAGGCCA
TGGCCACTGTGGGAAAACGGATTATCGCGGCACAGCAACGTACACACTTG
TACAGAAATCACGGGAATTGCCTGAGCGTGAAGGTGGCCAAGACAAGCTT
CAGACCCGCGGAGGCGGTTGCCAACGTCTTGGCCGGTATTGAGGCGGCCG
TAGAGGCGACGCCGGGGAAATGGAAGAATGTGATGGCCATCTCGGTCAAG
ACAAGCTCCTCGGTGGCACTCCCTCTCTACCAGCGCCTGCCCCAGTACCT
GATCAAGAAGCCGGGCGCGCTGGGGATCGGACAGGCGGTACATGCGCAGC
TCGAGGGAAATGAGCCGGGGGAGGAGGGGGAGGAAGGGGAGGGGAAACGT
GCCTTGTTGACGGTAAAAGCCTTGGAAAATCGTGGCAAAAAGCGAGGGCC
CCCCGTGTCTGAGGCGAAAGAGTCATCCGCCAAAAAGACGGGCCACAAGG
GGAGCAGTTTGGCTCCAAGGACAGACGCCGCCAAGAGCAGCCAACGAGGT
TTACCTCTGGACCCTAAAAGCAAGCTCTCAGGGGGAGAAATGAAAACCTC
GGTCGTAACCAAGGGGGCTATCGCCGAGTCGGGCGCCGCCAAGGTAGTGG
GAGATGCGTCGGGGAGGCCGAATCGGACAGGGGAGACGGTGGCCGCCGCG
AAGAAACGGGCTCGTCAGGAGGATGGGGCAGCGGCAGTAGCTTTGTTAGC
GTCGCGTGCCCAGACAGGGGGTAAGATTAGGGGGGGAAAAGCGGAGGTAG
AGAGTCTGGAGACGGGTCCTGTCCCGCGGAAGGGGAAGAAAGTGGTGGTG
GCCGAATCTGAAGGCAAAGGTAAGGCCAAGAAAAAGAATCGTATTTAAGT
CACACGGGATGGGGTTCAGGGATGTCACGTGGAAGAGTCCCTTGGACTGA
AAGAGGAGAGGAAGGCCATGCAATCTGCGTCACTTTACGGGGAAAGAAAA
AAGTCAAATGCAAGAGTGAGCCTTTC

Coding sequence (CDS) from alignment at CM002466.1:764204..766179-

>rna5755 ID=rna5755|Name=rna5755|organism=Nannochloropsis gaditana|type=CDS|length=3060bp|location=Sequence derived from alignment at CM002466.1:764204..766179- (Nannochloropsis gaditana)
CCTTCGACTTGTTCCTGGTGGATGACCGCATCTTGCCCCTCCTGGGAAAG
GCGCTCGGCAAGACTTTCTTTTCGAAGAAGAAACATCCCGTGGCCCTCAA
ACTTGGTGGCCTGTTGAGCAGCAACCCGCAGGCCATGGCCACTGTGGGAA
AACGGATTATCGCGGCACAGCAACGTACACACTTGTACAGAAATCACGGG
AATTGCCTGAGCGTGAAGGTGGCCAAGACAAGCTTCAGACCCGCGGAGGC
GGTTGCCAACGTCTTGGCCGGTATTGAGGCGGCCGTAGAGGCGACGCCGG
GGAAATGGAAGAATGTGATGGCCATCTCGGTCAAGACAAGCTCCTCGGTG
GCACTCCCTCTCTACCAGCGCCTGCCCCAGTACCTGATCAAGAAGCCGGG
CGCGCTGGGGATCGGACAGGCGGTACATGCGCAGCTCGAGGGAAATGAGC
CGGGGGAGGAGGGGGAGGAAGGGGAGGGGAAACGTGCCTTGTTGACGGTA
AAAGCCTTGGAAAATCGTGGCAAAAAGCGAGGGCCCCCCGTGTCTGAGGC
GAAAGAGTCATCCGCCAAAAAGACGGGCCACAAGGGGAGCAGTTTGGCTC
CAAGGACAGACGCCGCCAAGAGCAGCCAACGAGGTTTACCTCTGGACCCT
AAAAGCAAGCTCTCAGGGGGAGAAATGAAAACCTCGGTCGTAACCAAGGG
GGCTATCGCCGAGTCGGGCGCCGCCAAGGTAGTGGGAGATGCGTCGGGGA
GGCCGAATCGGACAGGGGAGACGGTGGCCGCCGCGAAGAAACGGGCTCGT
CAGGAGGATGGGGCAGCGGCAGTAGCTTTGTTAGCGTCGCGTGCCCAGAC
AGGGGGTAAGATTAGGGGGGGAAAAGCGGAGGTAGAGAGTCTGGAGACGG
GTCCTGTCCCGCGGAAGGGGAAGAAAGTGGTGGTGGCCGAATCTGAAGGC
AAAGGTAAGGCCAAGAAAAAGAATCGTATTTAAATGGCTGTCGTTTCCAA
TAAGGTGGGCGGCAGCAAGCGGAAAGTGACCTCCCCACCCTCCGCCATTA
CTGCTCGCACAAACCCGAAAAAAAGCAACACGTTGAGCAAAACAGATGAA
GCTCAAACGACGGCCGACAAGCTTACTTTGCCTCCAAGCCGCGTCGATGC
CACTCAGGCCACTCGTGCCGTGGAGGCATTACTGCAACATAATGCTCGGC
ACCAGGCTCTTGTAGCAAGCAAAAAATCCAAACAGGACCTCTTAGCGTCC
GAGGCAGGCGATTACATATTGATACAGATAGCGCTTGCCAAAATTCCTGA
ACGTGTGAGTCCCAAGCCGGTGCCTTTATCATTGCCCCACCCCCTCCACG
GTAGCGGCGGCGACGACGATGAAGACCATGCCGTGTGCTTGATAGTAAAA
GAATCGGACAAGGGTAAAGTTCAACGCGCGTTGAATGCGATGAAAATGGA
CGGCGTGCGTGAAGTCGTGGGATTGCAGGAGCTGAGAACGGACTATAAGG
AGTTCCAAGAGCGGCGACAGCTCCGGGACGCCTTCGACTTGTTCCTGGTG
GATGACCGCATCTTGCCCCTCCTGGGAAAGGCGCTCGGCAAGACTTTCTT
TTCGAAGAAGAAACATCCCGTGGCCCTCAAACTTGGTGGCCTGTTGAGCA
GCAACCCGCAGGCCATGGCCACTGTGGGAAAACGGATTATCGCGGCACAG
CAACGTACACACTTGTACAGAAATCACGGGAATTGCCTGAGCGTGAAGGT
GGCCAAGACAAGCTTCAGACCCGCGGAGGCGGTTGCCAACGTCTTGGCCG
GTATTGAGGCGGCCGTAGAGGCGACGCCGGGGAAATGGAAGAATGTGATG
GCCATCTCGGTCAAGACAAGCTCCTCGGTGGCACTCCCTCTCTACCAGCG
CCTGCCCCAGTACCTGATCAAGAAGCCGGGCGCGCTGGGGATCGGACAGG
CGGTACATGCGCAGCTCGAGGGAAATGAGCCGGGGGAGGAGGGGGAGGAA
GGGGAGGGGAAACGTGCCTTGTTGACGGTAAAAGCCTTGGAAAATCGTGG
CAAAAAGCGAGGGCCCCCCGTGTCTGAGGCGAAAGAGTCATCCGCCAAAA
AGACGGGCCACAAGGGGAGCAGTTTGGCTCCAAGGACAGACGCCGCCAAG
AGCAGCCAACGAGGTTTACCTCTGGACCCTAAAAGCAAGCTCTCAGGGGG
AGAAATGAAAACCTCGGTCGTAACCAAGGGGGCTATCGCCGAGTCGGGCG
CCGCCAAGGTAGTGGGAGATGCGTCGGGGAGGCCGAATCGGACAGGGGAG
ACGGTGGCCGCCGCGAAGAAACGGGCTCGTCAGGAGGATGGGGCAGCGGC
AGTAGCTTTGTTAGCGTCGCGTGCCCAGACAGGGGGTAAGATTAGGGGGG
GAAAAGCGGAGGTAGAGAGTCTGGAGACGGGTCCTGTCCCGCGGAAGGGG
AAGAAAGTGGTGGTGGCCGAATCTGAAGGCAAAGGTAAGGCCAAGAAAAA
GAATCGTATTTAAATGGCTGTCGTTTCCAATAAGGTGGGCGGCAGCAAGC
GGAAAGTGACCTCCCCACCCTCCGCCATTACTGCTCGCACAAACCCGAAA
AAAAGCAACACGTTGAGCAAAACAGATGAAGCTCAAACGACGGCCGACAA
GCTTACTTTGCCTCCAAGCCGCGTCGATGCCACTCAGGCCACTCGTGCCG
TGGAGGCATTACTGCAACATAATGCTCGGCACCAGGCTCTTGTAGCAAGC
AAAAAATCCAAACAGGACCTCTTAGCGTCCGAGGCAGGCGATTACATATT
GATACAGATAGCGCTTGCCAAAATTCCTGAACGTGTGAGTCCCAAGCCGG
TGCCTTTATCATTGCCCCACCCCCTCCACGGTAGCGGCGGCGACGACGAT
GAAGACCATGCCGTGTGCTTGATAGTAAAAGAATCGGACAAGGGTAAAGT
TCAACGCGCGTTGAATGCGATGAAAATGGACGGCGTGCGTGAAGTCGTGG
GATTGCAGGAGCTGAGAACGGACTATAAGGAGTTCCAAGAGCGGCGACAG
CTCCGGGACG

Synonyms

Publications