rna5748, rna5748 (mRNA) Nannochloropsis gaditana

Overview
Namerna5748
Unique Namerna5748
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1141
Alignment locationCM002466.1:749629..750550 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100086g14.3840.mrna
Orig protein idgnl|cribi|Naga_100086g14.3840
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:749629..750550 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100086g14gene5553Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24940.1cds5733Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5748rna5748-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5748 ID=rna5748|Name=rna5748|organism=Nannochloropsis gaditana|type=mRNA|length=1141bp
CCGTTGTCCTTAGTATTTTTTATTCGAAATCAGATAAGATGTGTGTCCCT
ATGGATACTTTCAGGGCACTAAGAAAGACGTCACGGACATGAAGGGAAAA
TCAGCTGACCTGCGGCAAGACGAAGGCATCTTTCCCCGTACAACAAAAGA
TTGGACGCTAATGCAACTGATCAGGAGAAAAAGCATAGCAGGTTGCAGTG
TCGGACGCATGGCTGTGGGTGCTGCTGTATGGGGACAAGGGGATAAAATG
ATGACGAGTAATGACACGTCTGGTACAAGTCCACCCTCCATGGCAAAGTG
CGATCGTTGGCCTGCATTGGAGAGCGATGCGGAGGTCTATACGGCATTGC
TACATACACTATTAAGCCCTTCATCTACGCCTTCAGACACCCGCACCCCT
TCATGTCCATTTTTTTTCCAAGATGTATTCTCTTTGGACGATGATTACTT
GGGGTTTGTGCACGGAGAGACGCTGGCATTGATACTCGCGTATGACGATC
GCGCGCTCAATCCGAGTCAAGAGTCTCCACCTGATCCTCAACTGCCAATC
GCACCTATTTTTATCAAGCAACTTCCCGTCCTCGACAATGCCTGCGGCAC
GATTGCGTTACTTCATGCAATAATCAACACACTGCCAGCTTCCACCATTC
CATCATCCTCGCTTCTTGCCAAGTTTGTGTCACCGATACAGGCTGGGGAA
ACGTCATTTACAAGTGAAAGCTTAGGAATACGCTTGGACGCTCACGAAGG
AATTCGCGCCGCACACTGTGAGCATGCTGCTCAAGGACAGAGCGAGCAAG
TCCAAGGTGATGCAGTGCGCTATCACTTCATCTGTTTGATTCCTAATCCG
TTATCGCCCTATCCAGCTGTTCTTGAGCTTGACGGTCTTAAAGCACACCC
AATCATACACGTTGGGGGAAGTGAGAATGGAAAAAAGGGAGAAACGTTTT
TGCAAATGGGCGCAATGGTGTTGAAGCGTGAGTTCCTGGCGCAATTCAGC
AATGCAGATGAGACACAAATAAATGTTCTGGCCCTTGTTCGCGAGGATCC
ATGAAAGTATGAAAAAAAGACAAGGCGGTACTACCCGTCTTCAAATTTTG
TCGCAGGCAAAGAAAAACAAGGAGGTACTACGCGTCATCAA
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protein sequence of rna5748

>rna5748-protein ID=rna5748-protein|Name=rna5748|organism=Nannochloropsis gaditana|type=polypeptide|length=120bp
MDSCMQIHRPEALHGCLLSIVLKKTSAEIDRTKGMPPVKFLQISHKIYFC
AFMLDQLCWDWSLLKKTVGMTFCVTRSHGPRPNHASRHCVRAKLVQHVYK
GYMHAIRESMRGFFVTSLCF
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mRNA from alignment at CM002466.1:749629..750550-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5748 ID=rna5748|Name=rna5748|organism=Nannochloropsis gaditana|type=mRNA|length=922bp|location=Sequence derived from alignment at CM002466.1:749629..750550- (Nannochloropsis gaditana)
AGAGACACATAAAACGATGACCCAACAGCCTGAACATCGCTTTCATTTCT
ATGGATATCATACATGCGGATGTTGCCGATGGTTAAAAGAGGACCGAACG
TCATTCATGACCATGTACGAGTGTGCATGTGTCGTCCTCCTCCATTTTGA
GGCCCCAGGCGGACCTCGGACTTGTCCTCTCTAAAATTCATCGTGTTCCA
CCACCGAGGCCCTCCCAGGACACACTGTACACAAATCAATCAGCTAGAAT
ACGCTTGGACGCATGACAAACCGCGGCAGGCTACGACCTTGCCCGGTGTC
CACGTCACGGGAAACTCGTGCGTACACGCGTCCAAGTACTATGCAGGGAC
GTCGCCGCTTCCAACGCGACGCTCCTTTCGTTTCAACTTAACGACGTCGT
CAACTTCGCTCAACATTACGGCCGCCTCTCACATTGCAGACGCGCGCGAA
GGCGCAACAAGACGAGGCAATCCTCCGAAAATTATTCGACGGACATGACA
GGGCACGGCAGGGGTCATTATTCGCGGGGGGCAAAGAGATACACACATTG
TTCTTCAACATGGATTCATGCATGCAAATCCATCGCCCTGAGGCCCTGCA
TGGGTGCCTGCTATCCATTGTCCTAAAAAAGACGTCGGCAGAAATTGACC
GGACGAAGGGCATGCCTCCAGTAAAGTTTTTACAAATATCACACAAAATT
TACTTTTGCGCGTTTATGTTAGACCAGTTGTGTTGGGATTGGTCATTATT
AAAAAAAACAGTTGGCATGACATTCTGCGTGACCAGAAGCCATGGCCCAC
GTCCAAATCATGCCTCGAGACACTGTGTTCGGGCGAAGCTTGTTCAGCAT
GTGTACAAAGGATATATGCATGCTATAAGAGAGAGCATGCGTGGCTTTTT
TGTAACATCTCTTTGTTTTTGA
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Coding sequence (CDS) from alignment at CM002466.1:749629..750550-

>rna5748 ID=rna5748|Name=rna5748|organism=Nannochloropsis gaditana|type=CDS|length=363bp|location=Sequence derived from alignment at CM002466.1:749629..750550- (Nannochloropsis gaditana)
ATGGATTCATGCATGCAAATCCATCGCCCTGAGGCCCTGCATGGGTGCCT
GCTATCCATTGTCCTAAAAAAGACGTCGGCAGAAATTGACCGGACGAAGG
GCATGCCTCCAGTAAAGTTTTTACAAATATCACACAAAATTTACTTTTGC
GCGTTTATGTTAGACCAGTTGTGTTGGGATTGGTCATTATTAAAAAAAAC
AGTTGGCATGACATTCTGCGTGACCAGAAGCCATGGCCCACGTCCAAATC
ATGCCTCGAGACACTGTGTTCGGGCGAAGCTTGTTCAGCATGTGTACAAA
GGATATATGCATGCTATAAGAGAGAGCATGCGTGGCTTTTTTGTAACATC
TCTTTGTTTTTGA
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Synonyms
Publications